Apple leaf disease classifier

Tells which of 8 classes a apple leaf photo shows: Apple Scab & Rust, Gray Spot, Apple Scab, Brown Spot, Alternaria Leaf Spot, Healthy, Marssonina Blotch, Root Rot / Collar Rot.

ConvNeXt-Small (convnext_small, from convnext_small.fb_in22k_ft_in1k), 224 × 224 RGB, 99 MB (half precision). 99.2 % test accuracy, macro-F1 0.989, on 2,308 held-out photos. Test photos come from the same datasets the model learned from, so real field photos score lower.

Class Recall F1 Test photos
Apple Scab & Rust 99.1% 0.994 463
Gray Spot 98.0% 0.980 50
Apple Scab 99.1% 0.987 427
Brown Spot 100.0% 0.995 193
Alternaria Leaf Spot 98.0% 0.970 50
Healthy 99.8% 0.996 567
Marssonina Blotch 98.8% 0.994 82
Root Rot / Collar Rot 98.7% 0.994 476

Use

import timm, torch
from PIL import Image

model = timm.create_model("hf-hub:ixrbhii/apple-disease-convnext", pretrained=True).eval()
cfg = timm.data.resolve_data_config({}, model=model)
x = timm.data.create_transform(**cfg)(Image.open("leaf.jpg").convert("RGB")).unsqueeze(0)
p = model(x).softmax(-1)[0]
labels = model.pretrained_cfg["label_names"]
for i in p.argsort(descending=True)[:3]:
    print(labels[i], f"{100 * p[i]:.1f} %")

The training images were resized to 224 × 224 without cropping; timm's transform above (resize + 224 centre crop) gives the same result for square photos. label_descriptions in config.json maps each name to the dataset's original label. Best results: one leaf filling most of the photo, in daylight and in focus. Below about 45 % confidence, ask for a better photo.

In an app: LULC Fetch (Agri â–¸ Diagnose crop disease) recognises the crop first and then runs the right disease model, with a photo-quality check and a disease map from geotagged photos.

Related

Training data and licence

Trained on public leaf-disease photo datasets, including PlantVillage (CC0) and MangoLeafBD (CC-BY-4.0). Released under CC-BY-4.0: please credit "Multi-crop disease models, IXR (agritechixr)" and the training datasets. A diagnosis supports, but doesn't replace, a local agriculture expert.

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