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Error code: DatasetGenerationCastError
Exception: DatasetGenerationCastError
Message: An error occurred while generating the dataset
All the data files must have the same columns, but at some point there are 53 new columns ({'primary_dx_group', 'true_alarm_rate', 'qsofa_max', 'sqi_nbp_map_mmhg', 'rpm_device_type', 'sex', 'age', 'median_response_time_min', 'admit_dt', 'deterioration_6h_label', 'sqi_nbp_dia_mmhg', 'device_uptime_pct', 'has_pa_catheter', 'sqi_hr_bpm', 'sofa_at_discharge', 'monitoring_setting', 'bed_id', 'monitor_manufacturer', 'rapid_response_event', 'vasopressor_flag', 'cci_score', 'sqi_temp_c', 'alarms_per_patient_day', 'sqi_nbp_sys_mmhg', 'apache2_score', 'rrt_flag', 'total_alarms', 'ventilation_status', 'news2_max', 'icu_unit_type', 'sofa_score', 'has_central_line', 'sqi_ibp_dia_mmhg', 'actionable_alarm_rate', 'in_hospital_mortality', 'readmission_30d', 'sqi_cardiac_output_lpm', 'discharge_dt', 'episode_duration_days', 'trajectory', 'alarm_limit_modification_count', 'fatigue_index_score', 'news2_mean', 'alarm_override_rate', 'has_arterial_line', 'sqi_spo2_pct', 'sqi_rr_bpm', 'sqi_etco2_mmhg', 'sqi_ibp_sys_mmhg', 'sqi_cvp_mmhg', 'lead_configuration', 'connectivity_drops', 'alarm_cascade_count'}) and 14 missing columns ({'alarm_type', 'alarm_onset_ts', 'alarm_priority', 'response_time_min', 'override_flag', 'true_alarm_flag', 'alarm_id', 'alarm_duration_sec', 'limit_at_alarm_low', 'intervention_triggered', 'limit_at_alarm_high', 'alarm_cascade_id', 'false_alarm_subtype', 'shift'}).
This happened while the csv dataset builder was generating data using
hf://datasets/xpertsystems/hlt009-sample/episode_summary.csv (at revision 0d08ba6e9f9b9199a38287345a5e31016db56610), [/tmp/hf-datasets-cache/medium/datasets/47780195040500-config-parquet-and-info-xpertsystems-hlt009-sampl-e75edecf/hub/datasets--xpertsystems--hlt009-sample/snapshots/0d08ba6e9f9b9199a38287345a5e31016db56610/alarm_events.csv (origin=hf://datasets/xpertsystems/hlt009-sample@0d08ba6e9f9b9199a38287345a5e31016db56610/alarm_events.csv), /tmp/hf-datasets-cache/medium/datasets/47780195040500-config-parquet-and-info-xpertsystems-hlt009-sampl-e75edecf/hub/datasets--xpertsystems--hlt009-sample/snapshots/0d08ba6e9f9b9199a38287345a5e31016db56610/episode_summary.csv (origin=hf://datasets/xpertsystems/hlt009-sample@0d08ba6e9f9b9199a38287345a5e31016db56610/episode_summary.csv), /tmp/hf-datasets-cache/medium/datasets/47780195040500-config-parquet-and-info-xpertsystems-hlt009-sampl-e75edecf/hub/datasets--xpertsystems--hlt009-sample/snapshots/0d08ba6e9f9b9199a38287345a5e31016db56610/interventions.csv (origin=hf://datasets/xpertsystems/hlt009-sample@0d08ba6e9f9b9199a38287345a5e31016db56610/interventions.csv), /tmp/hf-datasets-cache/medium/datasets/47780195040500-config-parquet-and-info-xpertsystems-hlt009-sampl-e75edecf/hub/datasets--xpertsystems--hlt009-sample/snapshots/0d08ba6e9f9b9199a38287345a5e31016db56610/vitals_timeseries.csv (origin=hf://datasets/xpertsystems/hlt009-sample@0d08ba6e9f9b9199a38287345a5e31016db56610/vitals_timeseries.csv)]
Please either edit the data files to have matching columns, or separate them into different configurations (see docs at https://hf.co/docs/hub/datasets-manual-configuration#multiple-configurations)
Traceback: Traceback (most recent call last):
File "/usr/local/lib/python3.12/site-packages/datasets/builder.py", line 1800, in _prepare_split_single
writer.write_table(table)
File "/usr/local/lib/python3.12/site-packages/datasets/arrow_writer.py", line 765, in write_table
self._write_table(pa_table, writer_batch_size=writer_batch_size)
File "/usr/local/lib/python3.12/site-packages/datasets/arrow_writer.py", line 773, in _write_table
pa_table = table_cast(pa_table, self._schema)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "/usr/local/lib/python3.12/site-packages/datasets/table.py", line 2321, in table_cast
return cast_table_to_schema(table, schema)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "/usr/local/lib/python3.12/site-packages/datasets/table.py", line 2249, in cast_table_to_schema
raise CastError(
datasets.table.CastError: Couldn't cast
episode_id: string
monitoring_setting: string
icu_unit_type: string
admit_dt: string
discharge_dt: string
episode_duration_days: double
bed_id: string
age: int64
sex: string
apache2_score: int64
sofa_score: int64
sofa_at_discharge: int64
primary_dx_group: string
cci_score: int64
ventilation_status: int64
vasopressor_flag: int64
rrt_flag: int64
has_arterial_line: int64
has_central_line: int64
has_pa_catheter: int64
trajectory: string
monitor_manufacturer: string
rpm_device_type: double
lead_configuration: string
device_uptime_pct: double
connectivity_drops: int64
true_alarm_rate: double
total_alarms: int64
alarms_per_patient_day: double
actionable_alarm_rate: double
alarm_override_rate: double
median_response_time_min: double
alarm_limit_modification_count: int64
alarm_cascade_count: int64
fatigue_index_score: double
news2_max: double
news2_mean: double
qsofa_max: int64
deterioration_6h_label: int64
in_hospital_mortality: int64
readmission_30d: int64
rapid_response_event: int64
sqi_hr_bpm: double
sqi_spo2_pct: double
sqi_rr_bpm: double
sqi_nbp_sys_mmhg: double
sqi_nbp_dia_mmhg: double
sqi_nbp_map_mmhg: double
sqi_ibp_sys_mmhg: double
sqi_ibp_dia_mmhg: double
sqi_temp_c: double
sqi_etco2_mmhg: double
sqi_cvp_mmhg: double
sqi_cardiac_output_lpm: double
-- schema metadata --
pandas: '{"index_columns": [{"kind": "range", "name": null, "start": 0, "' + 7231
to
{'alarm_id': Value('string'), 'episode_id': Value('string'), 'alarm_type': Value('string'), 'alarm_priority': Value('string'), 'alarm_onset_ts': Value('string'), 'alarm_duration_sec': Value('int64'), 'true_alarm_flag': Value('int64'), 'false_alarm_subtype': Value('string'), 'response_time_min': Value('float64'), 'intervention_triggered': Value('int64'), 'override_flag': Value('int64'), 'limit_at_alarm_low': Value('float64'), 'limit_at_alarm_high': Value('float64'), 'alarm_cascade_id': Value('int64'), 'shift': Value('string')}
because column names don't match
During handling of the above exception, another exception occurred:
Traceback (most recent call last):
File "/src/services/worker/src/worker/job_runners/config/parquet_and_info.py", line 1347, in compute_config_parquet_and_info_response
parquet_operations = convert_to_parquet(builder)
^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "/src/services/worker/src/worker/job_runners/config/parquet_and_info.py", line 980, in convert_to_parquet
builder.download_and_prepare(
File "/usr/local/lib/python3.12/site-packages/datasets/builder.py", line 882, in download_and_prepare
self._download_and_prepare(
File "/usr/local/lib/python3.12/site-packages/datasets/builder.py", line 943, in _download_and_prepare
self._prepare_split(split_generator, **prepare_split_kwargs)
File "/usr/local/lib/python3.12/site-packages/datasets/builder.py", line 1646, in _prepare_split
for job_id, done, content in self._prepare_split_single(
^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "/usr/local/lib/python3.12/site-packages/datasets/builder.py", line 1802, in _prepare_split_single
raise DatasetGenerationCastError.from_cast_error(
datasets.exceptions.DatasetGenerationCastError: An error occurred while generating the dataset
All the data files must have the same columns, but at some point there are 53 new columns ({'primary_dx_group', 'true_alarm_rate', 'qsofa_max', 'sqi_nbp_map_mmhg', 'rpm_device_type', 'sex', 'age', 'median_response_time_min', 'admit_dt', 'deterioration_6h_label', 'sqi_nbp_dia_mmhg', 'device_uptime_pct', 'has_pa_catheter', 'sqi_hr_bpm', 'sofa_at_discharge', 'monitoring_setting', 'bed_id', 'monitor_manufacturer', 'rapid_response_event', 'vasopressor_flag', 'cci_score', 'sqi_temp_c', 'alarms_per_patient_day', 'sqi_nbp_sys_mmhg', 'apache2_score', 'rrt_flag', 'total_alarms', 'ventilation_status', 'news2_max', 'icu_unit_type', 'sofa_score', 'has_central_line', 'sqi_ibp_dia_mmhg', 'actionable_alarm_rate', 'in_hospital_mortality', 'readmission_30d', 'sqi_cardiac_output_lpm', 'discharge_dt', 'episode_duration_days', 'trajectory', 'alarm_limit_modification_count', 'fatigue_index_score', 'news2_mean', 'alarm_override_rate', 'has_arterial_line', 'sqi_spo2_pct', 'sqi_rr_bpm', 'sqi_etco2_mmhg', 'sqi_ibp_sys_mmhg', 'sqi_cvp_mmhg', 'lead_configuration', 'connectivity_drops', 'alarm_cascade_count'}) and 14 missing columns ({'alarm_type', 'alarm_onset_ts', 'alarm_priority', 'response_time_min', 'override_flag', 'true_alarm_flag', 'alarm_id', 'alarm_duration_sec', 'limit_at_alarm_low', 'intervention_triggered', 'limit_at_alarm_high', 'alarm_cascade_id', 'false_alarm_subtype', 'shift'}).
This happened while the csv dataset builder was generating data using
hf://datasets/xpertsystems/hlt009-sample/episode_summary.csv (at revision 0d08ba6e9f9b9199a38287345a5e31016db56610), [/tmp/hf-datasets-cache/medium/datasets/47780195040500-config-parquet-and-info-xpertsystems-hlt009-sampl-e75edecf/hub/datasets--xpertsystems--hlt009-sample/snapshots/0d08ba6e9f9b9199a38287345a5e31016db56610/alarm_events.csv (origin=hf://datasets/xpertsystems/hlt009-sample@0d08ba6e9f9b9199a38287345a5e31016db56610/alarm_events.csv), /tmp/hf-datasets-cache/medium/datasets/47780195040500-config-parquet-and-info-xpertsystems-hlt009-sampl-e75edecf/hub/datasets--xpertsystems--hlt009-sample/snapshots/0d08ba6e9f9b9199a38287345a5e31016db56610/episode_summary.csv (origin=hf://datasets/xpertsystems/hlt009-sample@0d08ba6e9f9b9199a38287345a5e31016db56610/episode_summary.csv), /tmp/hf-datasets-cache/medium/datasets/47780195040500-config-parquet-and-info-xpertsystems-hlt009-sampl-e75edecf/hub/datasets--xpertsystems--hlt009-sample/snapshots/0d08ba6e9f9b9199a38287345a5e31016db56610/interventions.csv (origin=hf://datasets/xpertsystems/hlt009-sample@0d08ba6e9f9b9199a38287345a5e31016db56610/interventions.csv), /tmp/hf-datasets-cache/medium/datasets/47780195040500-config-parquet-and-info-xpertsystems-hlt009-sampl-e75edecf/hub/datasets--xpertsystems--hlt009-sample/snapshots/0d08ba6e9f9b9199a38287345a5e31016db56610/vitals_timeseries.csv (origin=hf://datasets/xpertsystems/hlt009-sample@0d08ba6e9f9b9199a38287345a5e31016db56610/vitals_timeseries.csv)]
Please either edit the data files to have matching columns, or separate them into different configurations (see docs at https://hf.co/docs/hub/datasets-manual-configuration#multiple-configurations)Need help to make the dataset viewer work? Make sure to review how to configure the dataset viewer, and open a discussion for direct support.
alarm_id string | episode_id string | alarm_type string | alarm_priority string | alarm_onset_ts string | alarm_duration_sec int64 | true_alarm_flag int64 | false_alarm_subtype string | response_time_min float64 | intervention_triggered int64 | override_flag int64 | limit_at_alarm_low float64 | limit_at_alarm_high null | alarm_cascade_id int64 | shift string |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
ALM-EP-D13-00000 | EP-D13DFE331D | LOW_SPO2 | HIGH | 2023-09-19T00:00:00.000000 | 900 | 0 | inappropriate_threshold | 19.66 | 0 | 0 | 90 | null | 0 | Night |
ALM-EP-D13-00001 | EP-D13DFE331D | LOW_SPO2 | HIGH | 2023-09-19T01:25:00.000000 | 300 | 1 | null | 8.86 | 1 | 0 | 90 | null | 0 | Night |
ALM-EP-D13-00002 | EP-D13DFE331D | LOW_SPO2 | HIGH | 2023-09-19T02:15:00.000000 | 240 | 0 | inappropriate_threshold | 153.02 | 0 | 0 | 90 | null | 0 | Night |
ALM-EP-D13-00003 | EP-D13DFE331D | LOW_SPO2 | HIGH | 2023-09-19T02:55:00.000000 | 600 | 0 | signal_quality_failure | 114.95 | 0 | 1 | 90 | null | 0 | Night |
ALM-EP-D13-00004 | EP-D13DFE331D | LOW_SPO2 | HIGH | 2023-09-19T04:10:00.000000 | 360 | 1 | null | 11.44 | 1 | 0 | 90 | null | 1 | Night |
ALM-EP-D13-00005 | EP-D13DFE331D | LOW_SPO2 | HIGH | 2023-09-19T04:50:00.000000 | 900 | 0 | inappropriate_threshold | 65.21 | 0 | 1 | 90 | null | 1 | Night |
ALM-EP-D13-00006 | EP-D13DFE331D | LOW_SPO2 | HIGH | 2023-09-19T06:30:00.000000 | 360 | 0 | self_correcting_transient | 69.36 | 0 | 0 | 90 | null | 1 | Night |
ALM-EP-D13-00007 | EP-D13DFE331D | LOW_SPO2 | HIGH | 2023-09-19T09:10:00.000000 | 780 | 0 | self_correcting_transient | 10.82 | 0 | 0 | 90 | null | 1 | Day |
ALM-EP-D13-00008 | EP-D13DFE331D | LOW_SPO2 | HIGH | 2023-09-19T12:05:00.000000 | 180 | 1 | null | 6.67 | 1 | 0 | 90 | null | 2 | Day |
ALM-EP-D13-00009 | EP-D13DFE331D | LOW_SPO2 | HIGH | 2023-09-19T12:30:00.000000 | 180 | 1 | null | 5.71 | 1 | 0 | 90 | null | 2 | Day |
ALM-EP-D13-00010 | EP-D13DFE331D | LOW_SPO2 | HIGH | 2023-09-19T12:50:00.000000 | 120 | 1 | null | 12.62 | 1 | 0 | 90 | null | 2 | Day |
ALM-EP-D13-00011 | EP-D13DFE331D | LOW_SPO2 | HIGH | 2023-09-19T14:20:00.000000 | 180 | 1 | null | 18.93 | 1 | 0 | 90 | null | 2 | Day |
ALM-EP-D13-00012 | EP-D13DFE331D | LOW_SPO2 | HIGH | 2023-09-19T14:40:00.000000 | 180 | 0 | self_correcting_transient | 12.9 | 0 | 1 | 90 | null | 3 | Day |
ALM-EP-D13-00013 | EP-D13DFE331D | LOW_SPO2 | HIGH | 2023-09-19T15:15:00.000000 | 120 | 0 | signal_quality_failure | 25.29 | 0 | 0 | 90 | null | 3 | Evening |
ALM-EP-D13-00014 | EP-D13DFE331D | LOW_SPO2 | HIGH | 2023-09-19T16:20:00.000000 | 480 | 0 | threshold_crossing_artifact | 39.66 | 0 | 1 | 90 | null | 3 | Evening |
ALM-EP-D13-00015 | EP-D13DFE331D | LOW_SPO2 | HIGH | 2023-09-19T19:15:00.000000 | 180 | 0 | signal_quality_failure | 29.07 | 0 | 1 | 90 | null | 3 | Evening |
ALM-EP-D13-00016 | EP-D13DFE331D | LOW_SPO2 | HIGH | 2023-09-19T20:10:00.000000 | 120 | 1 | null | 10.58 | 0 | 0 | 90 | null | 4 | Evening |
ALM-EP-D13-00017 | EP-D13DFE331D | LOW_SPO2 | HIGH | 2023-09-19T22:15:00.000000 | 240 | 0 | threshold_crossing_artifact | 24.34 | 0 | 0 | 90 | null | 4 | Evening |
ALM-EP-D13-00018 | EP-D13DFE331D | HIGH_RR | MEDIUM | 2023-09-19T00:00:00.000000 | 180 | 0 | threshold_crossing_artifact | 33.81 | 0 | 0 | null | null | 4 | Night |
ALM-EP-D13-00019 | EP-D13DFE331D | HIGH_RR | MEDIUM | 2023-09-19T00:20:00.000000 | 120 | 1 | null | 8.06 | 1 | 0 | null | null | 4 | Night |
ALM-EP-8B3-00000 | EP-8B3E27E8FF | HIGH_HR | MEDIUM | 2022-03-22T00:00:00.000000 | 720 | 0 | signal_quality_failure | 111.5 | 0 | 0 | null | null | 0 | Night |
ALM-EP-8B3-00001 | EP-8B3E27E8FF | HIGH_HR | MEDIUM | 2022-03-22T01:45:00.000000 | 120 | 0 | self_correcting_transient | 37.03 | 0 | 0 | null | null | 0 | Night |
ALM-EP-8B3-00002 | EP-8B3E27E8FF | HIGH_HR | MEDIUM | 2022-03-22T03:15:00.000000 | 120 | 0 | threshold_crossing_artifact | 62.31 | 0 | 1 | null | null | 0 | Night |
ALM-EP-8B3-00003 | EP-8B3E27E8FF | HIGH_HR | MEDIUM | 2022-03-22T05:35:00.000000 | 180 | 1 | null | 6.74 | 1 | 0 | null | null | 0 | Night |
ALM-EP-8B3-00004 | EP-8B3E27E8FF | HIGH_HR | MEDIUM | 2022-03-22T06:50:00.000000 | 180 | 0 | threshold_crossing_artifact | 3.41 | 0 | 1 | null | null | 1 | Night |
ALM-EP-DCB-00000 | EP-DCBBB7676F | HIGH_HR | MEDIUM | 2022-09-04T01:10:00.000000 | 360 | 0 | signal_quality_failure | 48.97 | 0 | 0 | null | null | 0 | Night |
ALM-EP-DCB-00001 | EP-DCBBB7676F | HIGH_HR | MEDIUM | 2022-09-04T16:45:00.000000 | 1,140 | 0 | self_correcting_transient | 65.3 | 0 | 0 | null | null | 0 | Evening |
ALM-EP-DCB-00002 | EP-DCBBB7676F | HIGH_HR | MEDIUM | 2022-09-04T22:35:00.000000 | 480 | 0 | inappropriate_threshold | 8.58 | 0 | 0 | null | null | 0 | Evening |
ALM-EP-DCB-00003 | EP-DCBBB7676F | HIGH_HR | MEDIUM | 2022-09-04T23:30:00.000000 | 540 | 0 | inappropriate_threshold | 114.06 | 0 | 0 | null | null | 0 | Night |
ALM-EP-DCB-00004 | EP-DCBBB7676F | HIGH_HR | MEDIUM | 2022-09-05T00:20:00.000000 | 1,140 | 0 | inappropriate_threshold | 6.9 | 0 | 1 | null | null | 1 | Night |
ALM-EP-971-00000 | EP-971E130D02 | LOW_CVP | MEDIUM | 2022-05-22T00:00:00.000000 | 480 | 0 | self_correcting_transient | 9.74 | 0 | 0 | 2 | null | 0 | Night |
ALM-EP-971-00001 | EP-971E130D02 | LOW_CVP | MEDIUM | 2022-05-22T00:45:00.000000 | 180 | 0 | signal_quality_failure | 25.74 | 0 | 1 | 2 | null | 0 | Night |
ALM-EP-793-00000 | EP-79322830C4 | HIGH_HR | MEDIUM | 2023-04-19T01:25:00.000000 | 240 | 0 | threshold_crossing_artifact | 148.71 | 0 | 0 | null | null | 0 | Night |
ALM-EP-793-00001 | EP-79322830C4 | HIGH_HR | MEDIUM | 2023-04-19T01:55:00.000000 | 300 | 0 | signal_quality_failure | 45.09 | 0 | 1 | null | null | 0 | Night |
ALM-EP-793-00002 | EP-79322830C4 | HIGH_HR | MEDIUM | 2023-04-19T02:50:00.000000 | 120 | 0 | signal_quality_failure | 95.43 | 0 | 1 | null | null | 0 | Night |
ALM-EP-793-00003 | EP-79322830C4 | HIGH_HR | MEDIUM | 2023-04-19T07:20:00.000000 | 120 | 0 | self_correcting_transient | 13.12 | 0 | 1 | null | null | 0 | Day |
ALM-EP-793-00004 | EP-79322830C4 | HIGH_HR | MEDIUM | 2023-04-19T11:25:00.000000 | 780 | 0 | inappropriate_threshold | 30.12 | 0 | 1 | null | null | 1 | Day |
ALM-EP-793-00005 | EP-79322830C4 | HIGH_HR | MEDIUM | 2023-04-19T13:40:00.000000 | 240 | 0 | inappropriate_threshold | 8.4 | 0 | 0 | null | null | 1 | Day |
ALM-EP-793-00006 | EP-79322830C4 | HIGH_HR | MEDIUM | 2023-04-19T15:25:00.000000 | 240 | 0 | threshold_crossing_artifact | 58.39 | 0 | 0 | null | null | 1 | Evening |
ALM-EP-793-00007 | EP-79322830C4 | HIGH_HR | MEDIUM | 2023-04-19T16:00:00.000000 | 120 | 0 | self_correcting_transient | 83.97 | 0 | 0 | null | null | 1 | Evening |
ALM-EP-793-00008 | EP-79322830C4 | HIGH_HR | MEDIUM | 2023-04-19T16:40:00.000000 | 1,680 | 0 | self_correcting_transient | 6.77 | 0 | 0 | null | null | 2 | Evening |
ALM-EP-793-00009 | EP-79322830C4 | HIGH_HR | MEDIUM | 2023-04-19T19:10:00.000000 | 840 | 0 | self_correcting_transient | 12.33 | 0 | 1 | null | null | 2 | Evening |
ALM-EP-793-00010 | EP-79322830C4 | HIGH_HR | MEDIUM | 2023-04-19T20:30:00.000000 | 660 | 0 | threshold_crossing_artifact | 7.24 | 0 | 1 | null | null | 2 | Evening |
ALM-EP-793-00011 | EP-79322830C4 | HIGH_HR | MEDIUM | 2023-04-20T01:05:00.000000 | 900 | 0 | threshold_crossing_artifact | 29.02 | 0 | 1 | null | null | 2 | Night |
ALM-EP-793-00012 | EP-79322830C4 | HIGH_HR | MEDIUM | 2023-04-20T02:35:00.000000 | 360 | 0 | threshold_crossing_artifact | 88.67 | 0 | 0 | null | null | 3 | Night |
ALM-EP-793-00013 | EP-79322830C4 | HIGH_HR | MEDIUM | 2023-04-20T03:25:00.000000 | 960 | 0 | inappropriate_threshold | 7.05 | 0 | 0 | null | null | 3 | Night |
ALM-EP-793-00014 | EP-79322830C4 | HIGH_HR | MEDIUM | 2023-04-20T05:00:00.000000 | 300 | 0 | inappropriate_threshold | 16.13 | 0 | 0 | null | null | 3 | Night |
ALM-EP-793-00015 | EP-79322830C4 | HIGH_HR | MEDIUM | 2023-04-20T05:35:00.000000 | 780 | 0 | signal_quality_failure | 10.23 | 0 | 0 | null | null | 3 | Night |
ALM-EP-793-00016 | EP-79322830C4 | HIGH_HR | MEDIUM | 2023-04-20T08:50:00.000000 | 180 | 1 | null | 10.81 | 1 | 0 | null | null | 4 | Day |
ALM-EP-793-00017 | EP-79322830C4 | HIGH_HR | MEDIUM | 2023-04-20T10:00:00.000000 | 1,320 | 0 | inappropriate_threshold | 22.97 | 0 | 0 | null | null | 4 | Day |
ALM-EP-793-00018 | EP-79322830C4 | HIGH_HR | MEDIUM | 2023-04-20T12:15:00.000000 | 240 | 0 | signal_quality_failure | 71.44 | 0 | 0 | null | null | 4 | Day |
ALM-EP-793-00019 | EP-79322830C4 | HIGH_HR | MEDIUM | 2023-04-20T12:40:00.000000 | 120 | 0 | signal_quality_failure | 147.92 | 0 | 1 | null | null | 4 | Day |
ALM-EP-793-00020 | EP-79322830C4 | HIGH_HR | MEDIUM | 2023-04-20T13:10:00.000000 | 3,600 | 1 | null | 6.44 | 1 | 0 | null | null | 5 | Day |
ALM-EP-793-00021 | EP-79322830C4 | HIGH_HR | MEDIUM | 2023-04-20T19:00:00.000000 | 1,140 | 0 | threshold_crossing_artifact | 28.45 | 0 | 1 | null | null | 5 | Evening |
ALM-EP-793-00022 | EP-79322830C4 | HIGH_HR | MEDIUM | 2023-04-20T20:40:00.000000 | 120 | 0 | signal_quality_failure | 93.56 | 0 | 0 | null | null | 5 | Evening |
ALM-EP-793-00023 | EP-79322830C4 | HIGH_HR | MEDIUM | 2023-04-20T21:55:00.000000 | 1,560 | 0 | signal_quality_failure | 11.95 | 0 | 0 | null | null | 5 | Evening |
ALM-EP-D05-00000 | EP-D056438DEB | LOW_SPO2 | HIGH | 2023-08-09T10:25:00.000000 | 480 | 0 | threshold_crossing_artifact | 38.69 | 0 | 1 | 90 | null | 0 | Day |
ALM-EP-658-00000 | EP-65877E4E4E | LOW_SPO2 | HIGH | 2023-04-06T01:55:00.000000 | 120 | 1 | null | 4.11 | 1 | 0 | 90 | null | 0 | Night |
ALM-EP-658-00001 | EP-65877E4E4E | HIGH_RR | MEDIUM | 2023-04-06T00:00:00.000000 | 120 | 0 | inappropriate_threshold | 600 | 0 | 0 | null | null | 0 | Night |
ALM-EP-423-00000 | EP-4236ED04E8 | HIGH_HR | MEDIUM | 2023-05-07T23:50:00.000000 | 420 | 0 | inappropriate_threshold | 22.57 | 0 | 0 | null | null | 0 | Night |
ALM-EP-423-00001 | EP-4236ED04E8 | HIGH_HR | MEDIUM | 2023-05-08T00:30:00.000000 | 240 | 0 | self_correcting_transient | 26.31 | 0 | 0 | null | null | 0 | Night |
ALM-EP-BF4-00000 | EP-BF4DA2337D | HIGH_HR | MEDIUM | 2022-03-19T15:20:00.000000 | 1,380 | 0 | inappropriate_threshold | 30.31 | 0 | 0 | null | null | 0 | Evening |
ALM-EP-BF4-00001 | EP-BF4DA2337D | HIGH_HR | MEDIUM | 2022-03-19T21:15:00.000000 | 1,980 | 0 | signal_quality_failure | 68 | 0 | 0 | null | null | 0 | Evening |
ALM-EP-BF4-00002 | EP-BF4DA2337D | HIGH_HR | MEDIUM | 2022-03-20T00:05:00.000000 | 2,100 | 0 | self_correcting_transient | 14.55 | 0 | 0 | null | null | 0 | Night |
ALM-EP-BF4-00003 | EP-BF4DA2337D | HIGH_HR | MEDIUM | 2022-03-20T03:05:00.000000 | 780 | 0 | threshold_crossing_artifact | 57.07 | 0 | 0 | null | null | 0 | Night |
ALM-EP-BF4-00004 | EP-BF4DA2337D | HIGH_HR | MEDIUM | 2022-03-20T04:25:00.000000 | 240 | 0 | inappropriate_threshold | 2.1 | 0 | 1 | null | null | 1 | Night |
ALM-EP-BF4-00005 | EP-BF4DA2337D | HIGH_HR | MEDIUM | 2022-03-20T06:05:00.000000 | 120 | 0 | threshold_crossing_artifact | 29.45 | 0 | 0 | null | null | 1 | Night |
ALM-EP-BF4-00006 | EP-BF4DA2337D | HIGH_HR | MEDIUM | 2022-03-20T07:40:00.000000 | 480 | 0 | signal_quality_failure | 48.09 | 0 | 1 | null | null | 1 | Day |
ALM-EP-BF4-00007 | EP-BF4DA2337D | HIGH_HR | MEDIUM | 2022-03-20T08:25:00.000000 | 360 | 0 | threshold_crossing_artifact | 250.68 | 0 | 1 | null | null | 1 | Day |
ALM-EP-BF4-00008 | EP-BF4DA2337D | HIGH_HR | MEDIUM | 2022-03-20T09:05:00.000000 | 300 | 1 | null | 15.85 | 0 | 0 | null | null | 2 | Day |
ALM-EP-BF4-00009 | EP-BF4DA2337D | HIGH_HR | MEDIUM | 2022-03-20T09:40:00.000000 | 660 | 0 | signal_quality_failure | 19.36 | 0 | 1 | null | null | 2 | Day |
ALM-EP-BF4-00010 | EP-BF4DA2337D | HIGH_HR | MEDIUM | 2022-03-20T10:40:00.000000 | 240 | 0 | self_correcting_transient | 14.54 | 0 | 1 | null | null | 2 | Day |
ALM-EP-BF4-00011 | EP-BF4DA2337D | HIGH_HR | MEDIUM | 2022-03-20T11:05:00.000000 | 840 | 0 | signal_quality_failure | 35.51 | 0 | 1 | null | null | 2 | Day |
ALM-EP-BF4-00012 | EP-BF4DA2337D | HIGH_HR | MEDIUM | 2022-03-20T12:30:00.000000 | 9,900 | 0 | inappropriate_threshold | 2.78 | 0 | 1 | null | null | 3 | Day |
ALM-EP-BF4-00013 | EP-BF4DA2337D | HIGH_HR | MEDIUM | 2022-03-21T02:20:00.000000 | 120 | 0 | threshold_crossing_artifact | 23.52 | 0 | 1 | null | null | 3 | Night |
ALM-EP-BF4-00014 | EP-BF4DA2337D | HIGH_HR | MEDIUM | 2022-03-21T02:40:00.000000 | 120 | 0 | inappropriate_threshold | 317.4 | 0 | 0 | null | null | 3 | Night |
ALM-EP-BF4-00015 | EP-BF4DA2337D | HIGH_HR | MEDIUM | 2022-03-21T02:55:00.000000 | 120 | 0 | self_correcting_transient | 266.74 | 0 | 0 | null | null | 3 | Night |
ALM-EP-BF4-00016 | EP-BF4DA2337D | LOW_SPO2 | HIGH | 2022-03-20T13:00:00.000000 | 240 | 0 | inappropriate_threshold | 49.61 | 0 | 1 | 90 | null | 4 | Day |
ALM-EP-BF4-00017 | EP-BF4DA2337D | LOW_SPO2 | HIGH | 2022-03-21T01:15:00.000000 | 120 | 0 | threshold_crossing_artifact | 24.47 | 0 | 1 | 90 | null | 4 | Night |
ALM-EP-BF4-00018 | EP-BF4DA2337D | LOW_SPO2 | HIGH | 2022-03-21T02:50:00.000000 | 180 | 1 | null | 5.01 | 0 | 1 | 90 | null | 4 | Night |
ALM-EP-BF4-00019 | EP-BF4DA2337D | LOW_SPO2 | HIGH | 2022-03-21T07:50:00.000000 | 540 | 0 | signal_quality_failure | 49.51 | 0 | 0 | 90 | null | 4 | Day |
ALM-EP-BF4-00020 | EP-BF4DA2337D | LOW_SPO2 | HIGH | 2022-03-21T08:55:00.000000 | 240 | 0 | inappropriate_threshold | 5.08 | 0 | 0 | 90 | null | 5 | Day |
ALM-EP-BF4-00021 | EP-BF4DA2337D | LOW_SPO2 | HIGH | 2022-03-21T12:10:00.000000 | 480 | 0 | self_correcting_transient | 78.06 | 0 | 1 | 90 | null | 5 | Day |
ALM-EP-8B1-00000 | EP-8B16A5A004 | LOW_SPO2 | HIGH | 2022-10-03T00:00:00.000000 | 180 | 0 | threshold_crossing_artifact | 70.14 | 0 | 0 | 90 | null | 0 | Night |
ALM-EP-BF4-00000 | EP-BF4D047EF9 | LOW_SPO2 | HIGH | 2022-04-12T00:00:00.000000 | 120 | 0 | threshold_crossing_artifact | 63.8 | 0 | 1 | 90 | null | 0 | Night |
ALM-EP-009-00000 | EP-009F4173A4 | HIGH_HR | MEDIUM | 2023-09-01T04:10:00.000000 | 120 | 0 | threshold_crossing_artifact | 57.05 | 0 | 1 | null | null | 0 | Night |
ALM-EP-009-00001 | EP-009F4173A4 | LOW_SPO2 | HIGH | 2023-08-30T08:40:00.000000 | 480 | 0 | self_correcting_transient | 19.02 | 0 | 1 | 90 | null | 0 | Day |
ALM-EP-009-00002 | EP-009F4173A4 | LOW_SPO2 | HIGH | 2023-08-30T09:25:00.000000 | 180 | 0 | self_correcting_transient | 21.6 | 0 | 1 | 90 | null | 0 | Day |
ALM-EP-009-00003 | EP-009F4173A4 | LOW_SPO2 | HIGH | 2023-08-30T09:45:00.000000 | 180 | 0 | signal_quality_failure | 21.24 | 0 | 1 | 90 | null | 0 | Day |
ALM-EP-009-00004 | EP-009F4173A4 | LOW_SPO2 | HIGH | 2023-08-30T10:15:00.000000 | 300 | 0 | signal_quality_failure | 26.79 | 0 | 0 | 90 | null | 1 | Day |
ALM-EP-009-00005 | EP-009F4173A4 | LOW_SPO2 | HIGH | 2023-08-30T11:05:00.000000 | 180 | 0 | threshold_crossing_artifact | 44.36 | 0 | 0 | 90 | null | 1 | Day |
ALM-EP-009-00006 | EP-009F4173A4 | LOW_SPO2 | HIGH | 2023-08-30T12:10:00.000000 | 420 | 0 | self_correcting_transient | 80.53 | 0 | 1 | 90 | null | 1 | Day |
ALM-EP-009-00007 | EP-009F4173A4 | LOW_SPO2 | HIGH | 2023-08-30T12:55:00.000000 | 1,680 | 0 | threshold_crossing_artifact | 7.54 | 0 | 0 | 90 | null | 1 | Day |
ALM-EP-009-00008 | EP-009F4173A4 | LOW_SPO2 | HIGH | 2023-08-30T17:30:00.000000 | 720 | 0 | threshold_crossing_artifact | 7.33 | 0 | 1 | 90 | null | 2 | Evening |
ALM-EP-009-00009 | EP-009F4173A4 | LOW_SPO2 | HIGH | 2023-08-30T18:50:00.000000 | 180 | 1 | null | 20.67 | 1 | 0 | 90 | null | 2 | Evening |
ALM-EP-009-00010 | EP-009F4173A4 | LOW_SPO2 | HIGH | 2023-08-30T19:25:00.000000 | 180 | 1 | null | 7.11 | 0 | 0 | 90 | null | 2 | Evening |
ALM-EP-009-00011 | EP-009F4173A4 | LOW_SPO2 | HIGH | 2023-08-30T19:45:00.000000 | 1,200 | 0 | signal_quality_failure | 7.72 | 0 | 1 | 90 | null | 2 | Evening |
ALM-EP-009-00012 | EP-009F4173A4 | LOW_SPO2 | HIGH | 2023-08-30T22:05:00.000000 | 300 | 1 | null | 1.46 | 1 | 0 | 90 | null | 3 | Evening |
ALM-EP-009-00013 | EP-009F4173A4 | LOW_SPO2 | HIGH | 2023-08-30T22:35:00.000000 | 480 | 0 | threshold_crossing_artifact | 36.54 | 0 | 0 | 90 | null | 3 | Evening |
ALM-EP-009-00014 | EP-009F4173A4 | HIGH_RR | MEDIUM | 2023-08-31T09:10:00.000000 | 720 | 1 | null | 2.9 | 1 | 0 | null | null | 3 | Day |
HLT-009 — Synthetic Continuous Vital Sign Monitoring Dataset (Sample Preview)
A free, schema-identical preview of the full HLT-009 commercial product from XpertSystems.ai.
A fully synthetic ICU continuous vital sign monitoring dataset combining 12-stream time-series vitals (HR/SpO2/RR/NBP/IBP/Temp/EtCO2/CVP/CO), alarm event logs with true/false labels, intervention logs (medication boluses, ventilator adjustments, code events), and 53-column episode-level summary data — calibrated to MIMIC-IV / eICU-CRD benchmarks with APACHE-II, SOFA, NEWS2, qSOFA, and CCI severity scoring.
⚠️ PRIVACY & SYNTHETIC NATURE Every record in this dataset is 100% synthetic. No real patient data, no PHI, no real medical device readings. Population-level distributions match published MIMIC-IV / eICU-CRD / Drew et al. benchmarks but the episodes and waveforms are computationally generated.
What's in this sample
| File | Rows | Cols | Description |
|---|---|---|---|
vitals_timeseries.csv |
~26,700 | 19 | One row per episode-timestep (5-min resolution). 12 vital streams + NEWS2 + qSOFA + artifact flag + 6h rolling features |
alarm_events.csv |
~170 | 15 | One row per alarm event. Type, priority (IEC 60601-1-8), true/false flag, false-alarm subtype, response time, override flag |
interventions.csv |
~15 | 8 | One row per clinical intervention (medication bolus, ventilator adjustment, code event, rapid response) |
episode_summary.csv |
25 | 53 | One row per episode. Demographics, APACHE-II, SOFA, CCI, ventilation/vasopressor/RRT flags, LOS, NEWS2 max/mean, deterioration label, mortality, 12 signal quality indices |
Total: ~5.3 MB across 5 files.
Schema highlights
vitals_timeseries.csv (19 columns, ~1,100 rows per episode at 5-min resolution)
Identity: episode_id, timestamp
12 vital streams (calibrated to MIMIC-IV physiological ranges):
- Cardiovascular:
hr_bpm,nbp_sys_mmhg,nbp_dia_mmhg,nbp_map_mmhg,ibp_sys_mmhg,ibp_dia_mmhg,cvp_mmhg,cardiac_output_lpm - Respiratory:
spo2_pct,rr_bpm,etco2_mmhg - Thermoregulation:
temp_c
Derived & quality: artifact_flag (4% rate per timestep), news2_score (RCP NEWS2 computed at each step), qsofa_score (Sepsis-3 qSOFA), news2_roll_max_4h, news2_rate_of_rise
alarm_events.csv (15 columns)
alarm_id, episode_id, alarm_type (18 types: HIGH_HR, LOW_HR, CRITICAL_LOW_HR, LOW_SPO2, CRITICAL_LOW_SPO2, HIGH_RR, APNEA, HIGH_SBP, LOW_SBP, LOW_MAP, HIGH_ETCO2, LOW_ETCO2, HIGH_CVP, LOW_CVP, HIGH_CO, LOW_CO, HIGH_IBP_SYS, LOW_IBP_SYS), alarm_priority (IEC 60601-1-8: LOW/MEDIUM/HIGH/CRITICAL), alarm_onset_ts, alarm_duration_sec, true_alarm_flag, false_alarm_subtype (Artifact / Motion / LeadOff / TechnicalError), response_time_min, intervention_triggered, override_flag, limit_at_alarm_low, limit_at_alarm_high, alarm_cascade_id, shift (Day/Evening/Night)
interventions.csv (8 columns)
intervention_id, episode_id, intervention_type (MEDICATION_BOLUS / VENTILATOR_ADJUSTMENT / POSITION_CHANGE / PHYSICIAN_NOTIFICATION / RAPID_RESPONSE_ACTIVATION / CODE_EVENT / NURSING_ASSESSMENT), intervention_ts, triggered_by_alarm, time_from_alarm_min, clinician_role, intervention_outcome
episode_summary.csv (53 columns)
Identity & setting: episode_id, monitoring_setting (ICU), icu_unit_type (MICU/SICU/CCU/Neuro ICU), bed_id, admit_dt, discharge_dt, episode_duration_days
Demographics & severity: age, sex, apache2_score (Knaus 1985), sofa_score (Vincent 1996), sofa_at_discharge, cci_score (Charlson 1987), primary_dx_group (Sepsis/Respiratory Failure/Cardiac/Neuro/Post-Surgical/Trauma/Other), trajectory (Stable/Improving/Deteriorating/Oscillating)
Clinical interventions: ventilation_status, vasopressor_flag, rrt_flag (renal replacement therapy), has_arterial_line, has_central_line, has_pa_catheter
Device metadata: monitor_manufacturer (Philips IntelliVue MX800 / GE Carescape B850 / Masimo Root / Nihon Kohden BSM-6000), rpm_device_type, lead_configuration (3-lead / 5-lead / 12-lead), device_uptime_pct, connectivity_drops
Alarm fatigue metrics (Drew et al. 2014): true_alarm_rate, total_alarms, alarms_per_patient_day, actionable_alarm_rate, alarm_override_rate, median_response_time_min, alarm_limit_modification_count, alarm_cascade_count, fatigue_index_score
Early warning & outcomes: news2_max, news2_mean, qsofa_max, deterioration_6h_label, in_hospital_mortality, readmission_30d, rapid_response_event
Signal Quality Indices (SQI): 12 columns sqi_* — one per vital stream
Calibration source story
The full HLT-009 generator anchors all distributions to authoritative critical care references:
- MIMIC-IV (Johnson et al. Scientific Data 2023) — ICU vital signs benchmark, LOS Weibull(1.4, 5.2), severity distributions
- eICU-CRD (Pollard et al. Scientific Data 2018) — Multi-center ICU database, ventilation/vasopressor rates
- APACHE-II (Knaus et al. Crit Care Med 1985) — Acute Physiology and Chronic Health Evaluation
- SOFA (Vincent et al. Intensive Care Med 1996) — Sequential Organ Failure Assessment
- NEWS2 (Royal College of Physicians 2017) — National Early Warning Score 2
- qSOFA (Singer et al. JAMA 2016) — Sepsis-3 Quick SOFA
- CCI (Charlson et al. J Chron Dis 1987) — Charlson Comorbidity Index
- Drew et al. (2014) PLoS ONE — Alarm fatigue benchmark (187 alarms/bed/day)
- Joint Commission Sentinel Event Alert 50 (2013) — Alarm safety standards
- Wunsch et al. (2010) JAMA — US ICU mechanical ventilation prevalence
- IEC 60601-1-8 — Medical electrical equipment alarm priority standard
Sample-scale validation scorecard
| Metric | Observed | Target | Tolerance | Status | Source |
|---|---|---|---|---|---|
| Mean APACHE-II score | 11.6 | 12.0 | ±4.0 | ✅ PASS | Knaus et al. (1985) / MIMIC-IV |
| Mean SOFA score | 3.1 | 3.5 | ±2.0 | ✅ PASS | Vincent et al. (1996) |
| Median LOS (days) | 2.99 | 4.0 | ±2.0 | ✅ PASS | MIMIC-IV (Johnson et al. 2023) |
| Ventilation rate | 56% | 40% | ±20% | ✅ PASS | Wunsch et al. (2010) |
| Mean NEWS2 score | 4.29 | 4.0 | ±1.5 | ✅ PASS | RCP NEWS2 (2017) |
| True alarm rate | 17.1% | 20% | ±10% | ✅ PASS | Joint Commission SE Alert 50 |
| Artifact flag rate | 3.85% | 4% | ±2% | ✅ PASS | Wong et al. (2018) ICU data quality |
| Vital stream count | 12 | 12 | — | ✅ PASS | Schema coverage |
| Alarm priority diversity | 2 | ≥2 | — | ✅ PASS | IEC 60601-1-8 |
| Timeseries temporal monotonicity | 100% | 100% | — | ✅ PASS | Data hygiene |
Grade: A+ (100/100) — verified across 6 random seeds (42, 7, 123, 2024, 99, 1).
Loading examples
Pandas — explore the episode summary
import pandas as pd
summary = pd.read_csv("episode_summary.csv")
vitals = pd.read_csv("vitals_timeseries.csv", parse_dates=["timestamp"])
alarms = pd.read_csv("alarm_events.csv", parse_dates=["alarm_onset_ts"])
# Severity by primary diagnosis
print(summary.groupby("primary_dx_group")[
["apache2_score", "sofa_score", "episode_duration_days"]
].mean().round(2))
# Alarm volume by ICU unit
print(summary.groupby("icu_unit_type")["alarms_per_patient_day"].mean())
Hugging Face Datasets
from datasets import load_dataset
ds = load_dataset("xpertsystems/hlt009-sample", data_files={
"vitals": "vitals_timeseries.csv",
"alarms": "alarm_events.csv",
"interventions": "interventions.csv",
"summary": "episode_summary.csv",
})
print(ds)
Vital sign trajectory plot
import pandas as pd
import matplotlib.pyplot as plt
vitals = pd.read_csv("vitals_timeseries.csv", parse_dates=["timestamp"])
# Plot HR + SpO2 trajectory for one episode
ep_id = vitals["episode_id"].iloc[0]
ep = vitals[vitals["episode_id"] == ep_id].sort_values("timestamp")
fig, (ax1, ax2) = plt.subplots(2, 1, figsize=(10, 6), sharex=True)
ax1.plot(ep["timestamp"], ep["hr_bpm"], color="#c44")
ax1.set_ylabel("HR (bpm)")
ax1.axhline(120, ls="--", color="grey", alpha=0.5) # HIGH_HR threshold
ax2.plot(ep["timestamp"], ep["spo2_pct"], color="#4488ff")
ax2.set_ylabel("SpO2 (%)")
ax2.axhline(90, ls="--", color="grey", alpha=0.5) # LOW_SPO2 threshold
ax2.set_xlabel("Time")
plt.suptitle(f"Vitals for episode {ep_id}")
plt.show()
Deterioration prediction baseline
import pandas as pd
import numpy as np
from sklearn.ensemble import GradientBoostingClassifier
from sklearn.model_selection import train_test_split
vitals = pd.read_csv("vitals_timeseries.csv", parse_dates=["timestamp"])
summary = pd.read_csv("episode_summary.csv")
# Build a feature matrix at episode level from first-4h vitals
first_4h_features = []
for ep_id, ep in vitals.groupby("episode_id"):
ep_sorted = ep.sort_values("timestamp")
# Use first 48 timesteps = first 4 hours at 5-min resolution
first_4h = ep_sorted.head(48)
if len(first_4h) >= 12:
first_4h_features.append({
"episode_id": ep_id,
"hr_mean": first_4h["hr_bpm"].mean(),
"hr_std": first_4h["hr_bpm"].std(),
"spo2_min": first_4h["spo2_pct"].min(),
"rr_max": first_4h["rr_bpm"].max(),
"news2_max_first4h": first_4h["news2_score"].max(),
"news2_mean_first4h": first_4h["news2_score"].mean(),
})
feats = pd.DataFrame(first_4h_features).merge(
summary[["episode_id", "apache2_score", "sofa_score", "cci_score",
"ventilation_status", "deterioration_6h_label"]],
on="episode_id"
)
X = feats.drop(["episode_id", "deterioration_6h_label"], axis=1).fillna(0)
y = feats["deterioration_6h_label"]
if y.nunique() > 1:
Xtr, Xte, ytr, yte = train_test_split(X, y, test_size=0.3, random_state=42)
m = GradientBoostingClassifier(random_state=42).fit(Xtr, ytr)
print(f"6h deterioration AUC: {m.score(Xte, yte):.3f}")
Alarm fatigue analysis
import pandas as pd
summary = pd.read_csv("episode_summary.csv")
alarms = pd.read_csv("alarm_events.csv")
# Fatigue index by trajectory
print(summary.groupby("trajectory")[
["alarms_per_patient_day", "true_alarm_rate", "alarm_override_rate",
"fatigue_index_score"]
].mean().round(3))
# False alarm subtypes
print(alarms[alarms["true_alarm_flag"] == 0]["false_alarm_subtype"]
.value_counts())
Suggested use cases
- 6-hour deterioration prediction — predict
deterioration_6h_labelfrom first-N-hour vitals + summary features - Alarm fatigue research — analyze actionable vs nuisance alarm patterns, build false-alarm classifiers
- Sepsis prediction — train models on vital trajectories + qSOFA + NEWS2 trends
- ICU mortality risk — predict
in_hospital_mortalityfrom baseline severity + early vital features - Mechanical ventilation prediction — predict ventilation onset from vital trajectories
- NEWS2 / qSOFA validation — test calibration of early warning scores in ML-augmented pipelines
- Signal quality / artifact classification — train artifact detectors using
sqi_*andartifact_flaglabels - Time-series anomaly detection — vital sign outlier detection, change-point detection
- Multi-stream time-series modeling — joint LSTM/Transformer modeling on 12 simultaneous vital streams
- Alarm cascade analysis — alarm propagation and crash-cart event prediction
- Healthcare AI MLOps — pipeline testing for streaming ICU data, real-time inference rehearsal
- Educational use in critical care medicine and biomedical engineering
Sample vs. full product
| Aspect | This sample | Full HLT-009 product |
|---|---|---|
| Episodes | 25 | 10,000+ (default) up to 1M |
| Settings | ICU only | mixed (ICU + RPM) configurable |
| Time resolution | 5-min | 1-min or 5-min |
| Schema | identical | identical |
| Calibration | identical | identical |
| License | CC-BY-NC-4.0 | Commercial license |
The full product unlocks:
- Up to 1M episodes for production-grade deterioration / sepsis / alarm fatigue model training
- RPM (Remote Patient Monitoring) episodes with multi-week outpatient monitoring (7-91 days)
- 1-min resolution for high-frequency analysis
- Mixed ICU+RPM for cross-care-setting model training
- Commercial use rights
Contact us for the full product.
Limitations & honest disclosures
- Sample is preview-only. 25 episodes × ~27K timesteps is enough to demonstrate schema and calibration, but is not statistically sufficient for training deterioration prediction or sepsis classifiers. Use the full product (10K+ episodes) for serious ML work.
- ICU-only in this sample, not mixed setting. RPM episodes average 7-91 days × 288 timesteps/day = ~14K rows each, which would push the sample past 20 MB. The full product supports mixed ICU + RPM cohorts.
- Sample is on the larger side (5.3 MB) because continuous vital sign data has natural fan-out — each multi-day ICU episode produces ~1,000-3,000 timesteps at 5-min resolution. The full product scales linearly with episode count.
- Alarm priority diversity limited at this sample scale. The schema supports 4 priority levels (LOW/MEDIUM/HIGH/CRITICAL per IEC 60601-1-8), but at n=25 only MEDIUM+HIGH alarm types fire reliably. CRITICAL alarms (CRITICAL_LOW_HR, APNEA, CRITICAL_LOW_SPO2) require extreme physiology that's rare in stable cohorts. LOW priority alarms (HIGH_CVP, HIGH_CO) are also rare. The full product produces all 4 levels at scale.
- Vital signs are simulated, not real waveform data. Each timestep value is sampled from physiologically-realistic distributions calibrated to MIMIC-IV ranges. This is appropriate for ML algorithm development, but does NOT capture the full beat-to-beat waveform variability of real continuous monitoring. Real waveforms exhibit autocorrelation, R-R interval variability, and respiratory modulation that this synthetic data does not fully reproduce.
- 5-minute resolution, not beat-to-beat. The full product supports 1-min resolution; production ICU monitors sample at 125-500 Hz (waveform-level). For HRV / arrhythmia / respiratory waveform analysis, real waveform data is required.
- Mortality rate runs slightly low at this sample size (4-16% vs MIMIC-IV target 8-15%). At n=25 episodes this is 1-4 deaths total, so seed-to-seed variance is high. The full product hits 10-12% mortality reliably.
- Ventilation rate runs slightly high (~50% vs target 30-45%). This is a generator parameter (
is_ventilated = rng.random() < 0.42) — the actual draw varies seed-to-seed. - Synthetic, not derived from real ICU records. Vital sign distributions, alarm patterns, and severity scores follow published critical care references but do NOT reflect any specific real patient cohort.
Ethical use guidance
This dataset is designed for:
- ICU deterioration prediction methodology development
- Alarm fatigue research and false-alarm classifier development
- Sepsis / NEWS2 / qSOFA validation methodology
- Continuous monitoring AI pipeline testing
- Educational use in critical care medicine and biomedical informatics
- Healthcare AI pretraining for time-series clinical prediction
This dataset is not appropriate for:
- Making clinical decisions about real patients
- FDA-regulated AI/SaMD device training (use real de-identified clinical data)
- Real-time alarm system tuning without separate validation
- Discriminatory analyses targeting protected demographic groups
Companion datasets in the Healthcare vertical
- HLT-001 — Synthetic Patient Population (5K patients × 79 cols, CDC/NHANES calibrated)
- HLT-002 — Synthetic EHR Dataset (4K encounters + FHIR R4 bundles)
- HLT-003 — Synthetic Clinical Trial Dataset (3 endpoint types + power sweep)
- HLT-004 — Synthetic Disease Progression Dataset (NSCLC + Heart Failure longitudinal)
- HLT-005 — Synthetic Hospital Admission Dataset (5K admissions + bed utilization)
- HLT-006 — Synthetic Medical Imaging Dataset (1K studies + COCO annotations + reports)
- HLT-007 — Synthetic Drug Response Dataset (3K patient-treatments × 25 drug classes + PGx + PK)
- HLT-008 — Synthetic Healthcare Claims Dataset (500 members + 30K claims + fraud labels)
- HLT-009 — Synthetic Continuous Vital Sign Monitoring Dataset (you are here)
Use HLT-001 through HLT-009 together for the full healthcare ML data stack: population → EHR → trials → progression → hospital ops → imaging → pharmacology → claims → continuous monitoring.
Citation
If you use this dataset, please cite:
@dataset{xpertsystems_hlt009_sample_2026,
author = {XpertSystems.ai},
title = {HLT-009 Synthetic Continuous Vital Sign Monitoring Dataset (Sample Preview)},
year = 2026,
publisher = {Hugging Face},
url = {https://huggingface.co/datasets/xpertsystems/hlt009-sample}
}
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- Email: pradeep@xpertsystems.ai
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