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The dataset generation failed because of a cast error
Error code:   DatasetGenerationCastError
Exception:    DatasetGenerationCastError
Message:      An error occurred while generating the dataset

All the data files must have the same columns, but at some point there are 53 new columns ({'primary_dx_group', 'true_alarm_rate', 'qsofa_max', 'sqi_nbp_map_mmhg', 'rpm_device_type', 'sex', 'age', 'median_response_time_min', 'admit_dt', 'deterioration_6h_label', 'sqi_nbp_dia_mmhg', 'device_uptime_pct', 'has_pa_catheter', 'sqi_hr_bpm', 'sofa_at_discharge', 'monitoring_setting', 'bed_id', 'monitor_manufacturer', 'rapid_response_event', 'vasopressor_flag', 'cci_score', 'sqi_temp_c', 'alarms_per_patient_day', 'sqi_nbp_sys_mmhg', 'apache2_score', 'rrt_flag', 'total_alarms', 'ventilation_status', 'news2_max', 'icu_unit_type', 'sofa_score', 'has_central_line', 'sqi_ibp_dia_mmhg', 'actionable_alarm_rate', 'in_hospital_mortality', 'readmission_30d', 'sqi_cardiac_output_lpm', 'discharge_dt', 'episode_duration_days', 'trajectory', 'alarm_limit_modification_count', 'fatigue_index_score', 'news2_mean', 'alarm_override_rate', 'has_arterial_line', 'sqi_spo2_pct', 'sqi_rr_bpm', 'sqi_etco2_mmhg', 'sqi_ibp_sys_mmhg', 'sqi_cvp_mmhg', 'lead_configuration', 'connectivity_drops', 'alarm_cascade_count'}) and 14 missing columns ({'alarm_type', 'alarm_onset_ts', 'alarm_priority', 'response_time_min', 'override_flag', 'true_alarm_flag', 'alarm_id', 'alarm_duration_sec', 'limit_at_alarm_low', 'intervention_triggered', 'limit_at_alarm_high', 'alarm_cascade_id', 'false_alarm_subtype', 'shift'}).

This happened while the csv dataset builder was generating data using

hf://datasets/xpertsystems/hlt009-sample/episode_summary.csv (at revision 0d08ba6e9f9b9199a38287345a5e31016db56610), [/tmp/hf-datasets-cache/medium/datasets/47780195040500-config-parquet-and-info-xpertsystems-hlt009-sampl-e75edecf/hub/datasets--xpertsystems--hlt009-sample/snapshots/0d08ba6e9f9b9199a38287345a5e31016db56610/alarm_events.csv (origin=hf://datasets/xpertsystems/hlt009-sample@0d08ba6e9f9b9199a38287345a5e31016db56610/alarm_events.csv), /tmp/hf-datasets-cache/medium/datasets/47780195040500-config-parquet-and-info-xpertsystems-hlt009-sampl-e75edecf/hub/datasets--xpertsystems--hlt009-sample/snapshots/0d08ba6e9f9b9199a38287345a5e31016db56610/episode_summary.csv (origin=hf://datasets/xpertsystems/hlt009-sample@0d08ba6e9f9b9199a38287345a5e31016db56610/episode_summary.csv), /tmp/hf-datasets-cache/medium/datasets/47780195040500-config-parquet-and-info-xpertsystems-hlt009-sampl-e75edecf/hub/datasets--xpertsystems--hlt009-sample/snapshots/0d08ba6e9f9b9199a38287345a5e31016db56610/interventions.csv (origin=hf://datasets/xpertsystems/hlt009-sample@0d08ba6e9f9b9199a38287345a5e31016db56610/interventions.csv), /tmp/hf-datasets-cache/medium/datasets/47780195040500-config-parquet-and-info-xpertsystems-hlt009-sampl-e75edecf/hub/datasets--xpertsystems--hlt009-sample/snapshots/0d08ba6e9f9b9199a38287345a5e31016db56610/vitals_timeseries.csv (origin=hf://datasets/xpertsystems/hlt009-sample@0d08ba6e9f9b9199a38287345a5e31016db56610/vitals_timeseries.csv)]

Please either edit the data files to have matching columns, or separate them into different configurations (see docs at https://hf.co/docs/hub/datasets-manual-configuration#multiple-configurations)
Traceback:    Traceback (most recent call last):
                File "/usr/local/lib/python3.12/site-packages/datasets/builder.py", line 1800, in _prepare_split_single
                  writer.write_table(table)
                File "/usr/local/lib/python3.12/site-packages/datasets/arrow_writer.py", line 765, in write_table
                  self._write_table(pa_table, writer_batch_size=writer_batch_size)
                File "/usr/local/lib/python3.12/site-packages/datasets/arrow_writer.py", line 773, in _write_table
                  pa_table = table_cast(pa_table, self._schema)
                             ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
                File "/usr/local/lib/python3.12/site-packages/datasets/table.py", line 2321, in table_cast
                  return cast_table_to_schema(table, schema)
                         ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
                File "/usr/local/lib/python3.12/site-packages/datasets/table.py", line 2249, in cast_table_to_schema
                  raise CastError(
              datasets.table.CastError: Couldn't cast
              episode_id: string
              monitoring_setting: string
              icu_unit_type: string
              admit_dt: string
              discharge_dt: string
              episode_duration_days: double
              bed_id: string
              age: int64
              sex: string
              apache2_score: int64
              sofa_score: int64
              sofa_at_discharge: int64
              primary_dx_group: string
              cci_score: int64
              ventilation_status: int64
              vasopressor_flag: int64
              rrt_flag: int64
              has_arterial_line: int64
              has_central_line: int64
              has_pa_catheter: int64
              trajectory: string
              monitor_manufacturer: string
              rpm_device_type: double
              lead_configuration: string
              device_uptime_pct: double
              connectivity_drops: int64
              true_alarm_rate: double
              total_alarms: int64
              alarms_per_patient_day: double
              actionable_alarm_rate: double
              alarm_override_rate: double
              median_response_time_min: double
              alarm_limit_modification_count: int64
              alarm_cascade_count: int64
              fatigue_index_score: double
              news2_max: double
              news2_mean: double
              qsofa_max: int64
              deterioration_6h_label: int64
              in_hospital_mortality: int64
              readmission_30d: int64
              rapid_response_event: int64
              sqi_hr_bpm: double
              sqi_spo2_pct: double
              sqi_rr_bpm: double
              sqi_nbp_sys_mmhg: double
              sqi_nbp_dia_mmhg: double
              sqi_nbp_map_mmhg: double
              sqi_ibp_sys_mmhg: double
              sqi_ibp_dia_mmhg: double
              sqi_temp_c: double
              sqi_etco2_mmhg: double
              sqi_cvp_mmhg: double
              sqi_cardiac_output_lpm: double
              -- schema metadata --
              pandas: '{"index_columns": [{"kind": "range", "name": null, "start": 0, "' + 7231
              to
              {'alarm_id': Value('string'), 'episode_id': Value('string'), 'alarm_type': Value('string'), 'alarm_priority': Value('string'), 'alarm_onset_ts': Value('string'), 'alarm_duration_sec': Value('int64'), 'true_alarm_flag': Value('int64'), 'false_alarm_subtype': Value('string'), 'response_time_min': Value('float64'), 'intervention_triggered': Value('int64'), 'override_flag': Value('int64'), 'limit_at_alarm_low': Value('float64'), 'limit_at_alarm_high': Value('float64'), 'alarm_cascade_id': Value('int64'), 'shift': Value('string')}
              because column names don't match
              
              During handling of the above exception, another exception occurred:
              
              Traceback (most recent call last):
                File "/src/services/worker/src/worker/job_runners/config/parquet_and_info.py", line 1347, in compute_config_parquet_and_info_response
                  parquet_operations = convert_to_parquet(builder)
                                       ^^^^^^^^^^^^^^^^^^^^^^^^^^^
                File "/src/services/worker/src/worker/job_runners/config/parquet_and_info.py", line 980, in convert_to_parquet
                  builder.download_and_prepare(
                File "/usr/local/lib/python3.12/site-packages/datasets/builder.py", line 882, in download_and_prepare
                  self._download_and_prepare(
                File "/usr/local/lib/python3.12/site-packages/datasets/builder.py", line 943, in _download_and_prepare
                  self._prepare_split(split_generator, **prepare_split_kwargs)
                File "/usr/local/lib/python3.12/site-packages/datasets/builder.py", line 1646, in _prepare_split
                  for job_id, done, content in self._prepare_split_single(
                                               ^^^^^^^^^^^^^^^^^^^^^^^^^^^
                File "/usr/local/lib/python3.12/site-packages/datasets/builder.py", line 1802, in _prepare_split_single
                  raise DatasetGenerationCastError.from_cast_error(
              datasets.exceptions.DatasetGenerationCastError: An error occurred while generating the dataset
              
              All the data files must have the same columns, but at some point there are 53 new columns ({'primary_dx_group', 'true_alarm_rate', 'qsofa_max', 'sqi_nbp_map_mmhg', 'rpm_device_type', 'sex', 'age', 'median_response_time_min', 'admit_dt', 'deterioration_6h_label', 'sqi_nbp_dia_mmhg', 'device_uptime_pct', 'has_pa_catheter', 'sqi_hr_bpm', 'sofa_at_discharge', 'monitoring_setting', 'bed_id', 'monitor_manufacturer', 'rapid_response_event', 'vasopressor_flag', 'cci_score', 'sqi_temp_c', 'alarms_per_patient_day', 'sqi_nbp_sys_mmhg', 'apache2_score', 'rrt_flag', 'total_alarms', 'ventilation_status', 'news2_max', 'icu_unit_type', 'sofa_score', 'has_central_line', 'sqi_ibp_dia_mmhg', 'actionable_alarm_rate', 'in_hospital_mortality', 'readmission_30d', 'sqi_cardiac_output_lpm', 'discharge_dt', 'episode_duration_days', 'trajectory', 'alarm_limit_modification_count', 'fatigue_index_score', 'news2_mean', 'alarm_override_rate', 'has_arterial_line', 'sqi_spo2_pct', 'sqi_rr_bpm', 'sqi_etco2_mmhg', 'sqi_ibp_sys_mmhg', 'sqi_cvp_mmhg', 'lead_configuration', 'connectivity_drops', 'alarm_cascade_count'}) and 14 missing columns ({'alarm_type', 'alarm_onset_ts', 'alarm_priority', 'response_time_min', 'override_flag', 'true_alarm_flag', 'alarm_id', 'alarm_duration_sec', 'limit_at_alarm_low', 'intervention_triggered', 'limit_at_alarm_high', 'alarm_cascade_id', 'false_alarm_subtype', 'shift'}).
              
              This happened while the csv dataset builder was generating data using
              
              hf://datasets/xpertsystems/hlt009-sample/episode_summary.csv (at revision 0d08ba6e9f9b9199a38287345a5e31016db56610), [/tmp/hf-datasets-cache/medium/datasets/47780195040500-config-parquet-and-info-xpertsystems-hlt009-sampl-e75edecf/hub/datasets--xpertsystems--hlt009-sample/snapshots/0d08ba6e9f9b9199a38287345a5e31016db56610/alarm_events.csv (origin=hf://datasets/xpertsystems/hlt009-sample@0d08ba6e9f9b9199a38287345a5e31016db56610/alarm_events.csv), /tmp/hf-datasets-cache/medium/datasets/47780195040500-config-parquet-and-info-xpertsystems-hlt009-sampl-e75edecf/hub/datasets--xpertsystems--hlt009-sample/snapshots/0d08ba6e9f9b9199a38287345a5e31016db56610/episode_summary.csv (origin=hf://datasets/xpertsystems/hlt009-sample@0d08ba6e9f9b9199a38287345a5e31016db56610/episode_summary.csv), /tmp/hf-datasets-cache/medium/datasets/47780195040500-config-parquet-and-info-xpertsystems-hlt009-sampl-e75edecf/hub/datasets--xpertsystems--hlt009-sample/snapshots/0d08ba6e9f9b9199a38287345a5e31016db56610/interventions.csv (origin=hf://datasets/xpertsystems/hlt009-sample@0d08ba6e9f9b9199a38287345a5e31016db56610/interventions.csv), /tmp/hf-datasets-cache/medium/datasets/47780195040500-config-parquet-and-info-xpertsystems-hlt009-sampl-e75edecf/hub/datasets--xpertsystems--hlt009-sample/snapshots/0d08ba6e9f9b9199a38287345a5e31016db56610/vitals_timeseries.csv (origin=hf://datasets/xpertsystems/hlt009-sample@0d08ba6e9f9b9199a38287345a5e31016db56610/vitals_timeseries.csv)]
              
              Please either edit the data files to have matching columns, or separate them into different configurations (see docs at https://hf.co/docs/hub/datasets-manual-configuration#multiple-configurations)

Need help to make the dataset viewer work? Make sure to review how to configure the dataset viewer, and open a discussion for direct support.

alarm_id
string
episode_id
string
alarm_type
string
alarm_priority
string
alarm_onset_ts
string
alarm_duration_sec
int64
true_alarm_flag
int64
false_alarm_subtype
string
response_time_min
float64
intervention_triggered
int64
override_flag
int64
limit_at_alarm_low
float64
limit_at_alarm_high
null
alarm_cascade_id
int64
shift
string
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ALM-EP-D13-00012
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self_correcting_transient
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ALM-EP-D13-00013
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threshold_crossing_artifact
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self_correcting_transient
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ALM-EP-793-00008
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self_correcting_transient
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null
null
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ALM-EP-793-00009
EP-79322830C4
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self_correcting_transient
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ALM-EP-793-00010
EP-79322830C4
HIGH_HR
MEDIUM
2023-04-19T20:30:00.000000
660
0
threshold_crossing_artifact
7.24
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1
null
null
2
Evening
ALM-EP-793-00011
EP-79322830C4
HIGH_HR
MEDIUM
2023-04-20T01:05:00.000000
900
0
threshold_crossing_artifact
29.02
0
1
null
null
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Night
ALM-EP-793-00012
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MEDIUM
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threshold_crossing_artifact
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0
null
null
3
Night
ALM-EP-793-00013
EP-79322830C4
HIGH_HR
MEDIUM
2023-04-20T03:25:00.000000
960
0
inappropriate_threshold
7.05
0
0
null
null
3
Night
ALM-EP-793-00014
EP-79322830C4
HIGH_HR
MEDIUM
2023-04-20T05:00:00.000000
300
0
inappropriate_threshold
16.13
0
0
null
null
3
Night
ALM-EP-793-00015
EP-79322830C4
HIGH_HR
MEDIUM
2023-04-20T05:35:00.000000
780
0
signal_quality_failure
10.23
0
0
null
null
3
Night
ALM-EP-793-00016
EP-79322830C4
HIGH_HR
MEDIUM
2023-04-20T08:50:00.000000
180
1
null
10.81
1
0
null
null
4
Day
ALM-EP-793-00017
EP-79322830C4
HIGH_HR
MEDIUM
2023-04-20T10:00:00.000000
1,320
0
inappropriate_threshold
22.97
0
0
null
null
4
Day
ALM-EP-793-00018
EP-79322830C4
HIGH_HR
MEDIUM
2023-04-20T12:15:00.000000
240
0
signal_quality_failure
71.44
0
0
null
null
4
Day
ALM-EP-793-00019
EP-79322830C4
HIGH_HR
MEDIUM
2023-04-20T12:40:00.000000
120
0
signal_quality_failure
147.92
0
1
null
null
4
Day
ALM-EP-793-00020
EP-79322830C4
HIGH_HR
MEDIUM
2023-04-20T13:10:00.000000
3,600
1
null
6.44
1
0
null
null
5
Day
ALM-EP-793-00021
EP-79322830C4
HIGH_HR
MEDIUM
2023-04-20T19:00:00.000000
1,140
0
threshold_crossing_artifact
28.45
0
1
null
null
5
Evening
ALM-EP-793-00022
EP-79322830C4
HIGH_HR
MEDIUM
2023-04-20T20:40:00.000000
120
0
signal_quality_failure
93.56
0
0
null
null
5
Evening
ALM-EP-793-00023
EP-79322830C4
HIGH_HR
MEDIUM
2023-04-20T21:55:00.000000
1,560
0
signal_quality_failure
11.95
0
0
null
null
5
Evening
ALM-EP-D05-00000
EP-D056438DEB
LOW_SPO2
HIGH
2023-08-09T10:25:00.000000
480
0
threshold_crossing_artifact
38.69
0
1
90
null
0
Day
ALM-EP-658-00000
EP-65877E4E4E
LOW_SPO2
HIGH
2023-04-06T01:55:00.000000
120
1
null
4.11
1
0
90
null
0
Night
ALM-EP-658-00001
EP-65877E4E4E
HIGH_RR
MEDIUM
2023-04-06T00:00:00.000000
120
0
inappropriate_threshold
600
0
0
null
null
0
Night
ALM-EP-423-00000
EP-4236ED04E8
HIGH_HR
MEDIUM
2023-05-07T23:50:00.000000
420
0
inappropriate_threshold
22.57
0
0
null
null
0
Night
ALM-EP-423-00001
EP-4236ED04E8
HIGH_HR
MEDIUM
2023-05-08T00:30:00.000000
240
0
self_correcting_transient
26.31
0
0
null
null
0
Night
ALM-EP-BF4-00000
EP-BF4DA2337D
HIGH_HR
MEDIUM
2022-03-19T15:20:00.000000
1,380
0
inappropriate_threshold
30.31
0
0
null
null
0
Evening
ALM-EP-BF4-00001
EP-BF4DA2337D
HIGH_HR
MEDIUM
2022-03-19T21:15:00.000000
1,980
0
signal_quality_failure
68
0
0
null
null
0
Evening
ALM-EP-BF4-00002
EP-BF4DA2337D
HIGH_HR
MEDIUM
2022-03-20T00:05:00.000000
2,100
0
self_correcting_transient
14.55
0
0
null
null
0
Night
ALM-EP-BF4-00003
EP-BF4DA2337D
HIGH_HR
MEDIUM
2022-03-20T03:05:00.000000
780
0
threshold_crossing_artifact
57.07
0
0
null
null
0
Night
ALM-EP-BF4-00004
EP-BF4DA2337D
HIGH_HR
MEDIUM
2022-03-20T04:25:00.000000
240
0
inappropriate_threshold
2.1
0
1
null
null
1
Night
ALM-EP-BF4-00005
EP-BF4DA2337D
HIGH_HR
MEDIUM
2022-03-20T06:05:00.000000
120
0
threshold_crossing_artifact
29.45
0
0
null
null
1
Night
ALM-EP-BF4-00006
EP-BF4DA2337D
HIGH_HR
MEDIUM
2022-03-20T07:40:00.000000
480
0
signal_quality_failure
48.09
0
1
null
null
1
Day
ALM-EP-BF4-00007
EP-BF4DA2337D
HIGH_HR
MEDIUM
2022-03-20T08:25:00.000000
360
0
threshold_crossing_artifact
250.68
0
1
null
null
1
Day
ALM-EP-BF4-00008
EP-BF4DA2337D
HIGH_HR
MEDIUM
2022-03-20T09:05:00.000000
300
1
null
15.85
0
0
null
null
2
Day
ALM-EP-BF4-00009
EP-BF4DA2337D
HIGH_HR
MEDIUM
2022-03-20T09:40:00.000000
660
0
signal_quality_failure
19.36
0
1
null
null
2
Day
ALM-EP-BF4-00010
EP-BF4DA2337D
HIGH_HR
MEDIUM
2022-03-20T10:40:00.000000
240
0
self_correcting_transient
14.54
0
1
null
null
2
Day
ALM-EP-BF4-00011
EP-BF4DA2337D
HIGH_HR
MEDIUM
2022-03-20T11:05:00.000000
840
0
signal_quality_failure
35.51
0
1
null
null
2
Day
ALM-EP-BF4-00012
EP-BF4DA2337D
HIGH_HR
MEDIUM
2022-03-20T12:30:00.000000
9,900
0
inappropriate_threshold
2.78
0
1
null
null
3
Day
ALM-EP-BF4-00013
EP-BF4DA2337D
HIGH_HR
MEDIUM
2022-03-21T02:20:00.000000
120
0
threshold_crossing_artifact
23.52
0
1
null
null
3
Night
ALM-EP-BF4-00014
EP-BF4DA2337D
HIGH_HR
MEDIUM
2022-03-21T02:40:00.000000
120
0
inappropriate_threshold
317.4
0
0
null
null
3
Night
ALM-EP-BF4-00015
EP-BF4DA2337D
HIGH_HR
MEDIUM
2022-03-21T02:55:00.000000
120
0
self_correcting_transient
266.74
0
0
null
null
3
Night
ALM-EP-BF4-00016
EP-BF4DA2337D
LOW_SPO2
HIGH
2022-03-20T13:00:00.000000
240
0
inappropriate_threshold
49.61
0
1
90
null
4
Day
ALM-EP-BF4-00017
EP-BF4DA2337D
LOW_SPO2
HIGH
2022-03-21T01:15:00.000000
120
0
threshold_crossing_artifact
24.47
0
1
90
null
4
Night
ALM-EP-BF4-00018
EP-BF4DA2337D
LOW_SPO2
HIGH
2022-03-21T02:50:00.000000
180
1
null
5.01
0
1
90
null
4
Night
ALM-EP-BF4-00019
EP-BF4DA2337D
LOW_SPO2
HIGH
2022-03-21T07:50:00.000000
540
0
signal_quality_failure
49.51
0
0
90
null
4
Day
ALM-EP-BF4-00020
EP-BF4DA2337D
LOW_SPO2
HIGH
2022-03-21T08:55:00.000000
240
0
inappropriate_threshold
5.08
0
0
90
null
5
Day
ALM-EP-BF4-00021
EP-BF4DA2337D
LOW_SPO2
HIGH
2022-03-21T12:10:00.000000
480
0
self_correcting_transient
78.06
0
1
90
null
5
Day
ALM-EP-8B1-00000
EP-8B16A5A004
LOW_SPO2
HIGH
2022-10-03T00:00:00.000000
180
0
threshold_crossing_artifact
70.14
0
0
90
null
0
Night
ALM-EP-BF4-00000
EP-BF4D047EF9
LOW_SPO2
HIGH
2022-04-12T00:00:00.000000
120
0
threshold_crossing_artifact
63.8
0
1
90
null
0
Night
ALM-EP-009-00000
EP-009F4173A4
HIGH_HR
MEDIUM
2023-09-01T04:10:00.000000
120
0
threshold_crossing_artifact
57.05
0
1
null
null
0
Night
ALM-EP-009-00001
EP-009F4173A4
LOW_SPO2
HIGH
2023-08-30T08:40:00.000000
480
0
self_correcting_transient
19.02
0
1
90
null
0
Day
ALM-EP-009-00002
EP-009F4173A4
LOW_SPO2
HIGH
2023-08-30T09:25:00.000000
180
0
self_correcting_transient
21.6
0
1
90
null
0
Day
ALM-EP-009-00003
EP-009F4173A4
LOW_SPO2
HIGH
2023-08-30T09:45:00.000000
180
0
signal_quality_failure
21.24
0
1
90
null
0
Day
ALM-EP-009-00004
EP-009F4173A4
LOW_SPO2
HIGH
2023-08-30T10:15:00.000000
300
0
signal_quality_failure
26.79
0
0
90
null
1
Day
ALM-EP-009-00005
EP-009F4173A4
LOW_SPO2
HIGH
2023-08-30T11:05:00.000000
180
0
threshold_crossing_artifact
44.36
0
0
90
null
1
Day
ALM-EP-009-00006
EP-009F4173A4
LOW_SPO2
HIGH
2023-08-30T12:10:00.000000
420
0
self_correcting_transient
80.53
0
1
90
null
1
Day
ALM-EP-009-00007
EP-009F4173A4
LOW_SPO2
HIGH
2023-08-30T12:55:00.000000
1,680
0
threshold_crossing_artifact
7.54
0
0
90
null
1
Day
ALM-EP-009-00008
EP-009F4173A4
LOW_SPO2
HIGH
2023-08-30T17:30:00.000000
720
0
threshold_crossing_artifact
7.33
0
1
90
null
2
Evening
ALM-EP-009-00009
EP-009F4173A4
LOW_SPO2
HIGH
2023-08-30T18:50:00.000000
180
1
null
20.67
1
0
90
null
2
Evening
ALM-EP-009-00010
EP-009F4173A4
LOW_SPO2
HIGH
2023-08-30T19:25:00.000000
180
1
null
7.11
0
0
90
null
2
Evening
ALM-EP-009-00011
EP-009F4173A4
LOW_SPO2
HIGH
2023-08-30T19:45:00.000000
1,200
0
signal_quality_failure
7.72
0
1
90
null
2
Evening
ALM-EP-009-00012
EP-009F4173A4
LOW_SPO2
HIGH
2023-08-30T22:05:00.000000
300
1
null
1.46
1
0
90
null
3
Evening
ALM-EP-009-00013
EP-009F4173A4
LOW_SPO2
HIGH
2023-08-30T22:35:00.000000
480
0
threshold_crossing_artifact
36.54
0
0
90
null
3
Evening
ALM-EP-009-00014
EP-009F4173A4
HIGH_RR
MEDIUM
2023-08-31T09:10:00.000000
720
1
null
2.9
1
0
null
null
3
Day
End of preview.

HLT-009 — Synthetic Continuous Vital Sign Monitoring Dataset (Sample Preview)

A free, schema-identical preview of the full HLT-009 commercial product from XpertSystems.ai.

A fully synthetic ICU continuous vital sign monitoring dataset combining 12-stream time-series vitals (HR/SpO2/RR/NBP/IBP/Temp/EtCO2/CVP/CO), alarm event logs with true/false labels, intervention logs (medication boluses, ventilator adjustments, code events), and 53-column episode-level summary data — calibrated to MIMIC-IV / eICU-CRD benchmarks with APACHE-II, SOFA, NEWS2, qSOFA, and CCI severity scoring.

⚠️ PRIVACY & SYNTHETIC NATURE Every record in this dataset is 100% synthetic. No real patient data, no PHI, no real medical device readings. Population-level distributions match published MIMIC-IV / eICU-CRD / Drew et al. benchmarks but the episodes and waveforms are computationally generated.


What's in this sample

File Rows Cols Description
vitals_timeseries.csv ~26,700 19 One row per episode-timestep (5-min resolution). 12 vital streams + NEWS2 + qSOFA + artifact flag + 6h rolling features
alarm_events.csv ~170 15 One row per alarm event. Type, priority (IEC 60601-1-8), true/false flag, false-alarm subtype, response time, override flag
interventions.csv ~15 8 One row per clinical intervention (medication bolus, ventilator adjustment, code event, rapid response)
episode_summary.csv 25 53 One row per episode. Demographics, APACHE-II, SOFA, CCI, ventilation/vasopressor/RRT flags, LOS, NEWS2 max/mean, deterioration label, mortality, 12 signal quality indices

Total: ~5.3 MB across 5 files.


Schema highlights

vitals_timeseries.csv (19 columns, ~1,100 rows per episode at 5-min resolution)

Identity: episode_id, timestamp

12 vital streams (calibrated to MIMIC-IV physiological ranges):

  • Cardiovascular: hr_bpm, nbp_sys_mmhg, nbp_dia_mmhg, nbp_map_mmhg, ibp_sys_mmhg, ibp_dia_mmhg, cvp_mmhg, cardiac_output_lpm
  • Respiratory: spo2_pct, rr_bpm, etco2_mmhg
  • Thermoregulation: temp_c

Derived & quality: artifact_flag (4% rate per timestep), news2_score (RCP NEWS2 computed at each step), qsofa_score (Sepsis-3 qSOFA), news2_roll_max_4h, news2_rate_of_rise

alarm_events.csv (15 columns)

alarm_id, episode_id, alarm_type (18 types: HIGH_HR, LOW_HR, CRITICAL_LOW_HR, LOW_SPO2, CRITICAL_LOW_SPO2, HIGH_RR, APNEA, HIGH_SBP, LOW_SBP, LOW_MAP, HIGH_ETCO2, LOW_ETCO2, HIGH_CVP, LOW_CVP, HIGH_CO, LOW_CO, HIGH_IBP_SYS, LOW_IBP_SYS), alarm_priority (IEC 60601-1-8: LOW/MEDIUM/HIGH/CRITICAL), alarm_onset_ts, alarm_duration_sec, true_alarm_flag, false_alarm_subtype (Artifact / Motion / LeadOff / TechnicalError), response_time_min, intervention_triggered, override_flag, limit_at_alarm_low, limit_at_alarm_high, alarm_cascade_id, shift (Day/Evening/Night)

interventions.csv (8 columns)

intervention_id, episode_id, intervention_type (MEDICATION_BOLUS / VENTILATOR_ADJUSTMENT / POSITION_CHANGE / PHYSICIAN_NOTIFICATION / RAPID_RESPONSE_ACTIVATION / CODE_EVENT / NURSING_ASSESSMENT), intervention_ts, triggered_by_alarm, time_from_alarm_min, clinician_role, intervention_outcome

episode_summary.csv (53 columns)

Identity & setting: episode_id, monitoring_setting (ICU), icu_unit_type (MICU/SICU/CCU/Neuro ICU), bed_id, admit_dt, discharge_dt, episode_duration_days

Demographics & severity: age, sex, apache2_score (Knaus 1985), sofa_score (Vincent 1996), sofa_at_discharge, cci_score (Charlson 1987), primary_dx_group (Sepsis/Respiratory Failure/Cardiac/Neuro/Post-Surgical/Trauma/Other), trajectory (Stable/Improving/Deteriorating/Oscillating)

Clinical interventions: ventilation_status, vasopressor_flag, rrt_flag (renal replacement therapy), has_arterial_line, has_central_line, has_pa_catheter

Device metadata: monitor_manufacturer (Philips IntelliVue MX800 / GE Carescape B850 / Masimo Root / Nihon Kohden BSM-6000), rpm_device_type, lead_configuration (3-lead / 5-lead / 12-lead), device_uptime_pct, connectivity_drops

Alarm fatigue metrics (Drew et al. 2014): true_alarm_rate, total_alarms, alarms_per_patient_day, actionable_alarm_rate, alarm_override_rate, median_response_time_min, alarm_limit_modification_count, alarm_cascade_count, fatigue_index_score

Early warning & outcomes: news2_max, news2_mean, qsofa_max, deterioration_6h_label, in_hospital_mortality, readmission_30d, rapid_response_event

Signal Quality Indices (SQI): 12 columns sqi_* — one per vital stream


Calibration source story

The full HLT-009 generator anchors all distributions to authoritative critical care references:

  • MIMIC-IV (Johnson et al. Scientific Data 2023) — ICU vital signs benchmark, LOS Weibull(1.4, 5.2), severity distributions
  • eICU-CRD (Pollard et al. Scientific Data 2018) — Multi-center ICU database, ventilation/vasopressor rates
  • APACHE-II (Knaus et al. Crit Care Med 1985) — Acute Physiology and Chronic Health Evaluation
  • SOFA (Vincent et al. Intensive Care Med 1996) — Sequential Organ Failure Assessment
  • NEWS2 (Royal College of Physicians 2017) — National Early Warning Score 2
  • qSOFA (Singer et al. JAMA 2016) — Sepsis-3 Quick SOFA
  • CCI (Charlson et al. J Chron Dis 1987) — Charlson Comorbidity Index
  • Drew et al. (2014) PLoS ONE — Alarm fatigue benchmark (187 alarms/bed/day)
  • Joint Commission Sentinel Event Alert 50 (2013) — Alarm safety standards
  • Wunsch et al. (2010) JAMA — US ICU mechanical ventilation prevalence
  • IEC 60601-1-8 — Medical electrical equipment alarm priority standard

Sample-scale validation scorecard

Metric Observed Target Tolerance Status Source
Mean APACHE-II score 11.6 12.0 ±4.0 ✅ PASS Knaus et al. (1985) / MIMIC-IV
Mean SOFA score 3.1 3.5 ±2.0 ✅ PASS Vincent et al. (1996)
Median LOS (days) 2.99 4.0 ±2.0 ✅ PASS MIMIC-IV (Johnson et al. 2023)
Ventilation rate 56% 40% ±20% ✅ PASS Wunsch et al. (2010)
Mean NEWS2 score 4.29 4.0 ±1.5 ✅ PASS RCP NEWS2 (2017)
True alarm rate 17.1% 20% ±10% ✅ PASS Joint Commission SE Alert 50
Artifact flag rate 3.85% 4% ±2% ✅ PASS Wong et al. (2018) ICU data quality
Vital stream count 12 12 ✅ PASS Schema coverage
Alarm priority diversity 2 ≥2 ✅ PASS IEC 60601-1-8
Timeseries temporal monotonicity 100% 100% ✅ PASS Data hygiene

Grade: A+ (100/100) — verified across 6 random seeds (42, 7, 123, 2024, 99, 1).


Loading examples

Pandas — explore the episode summary

import pandas as pd

summary = pd.read_csv("episode_summary.csv")
vitals = pd.read_csv("vitals_timeseries.csv", parse_dates=["timestamp"])
alarms = pd.read_csv("alarm_events.csv", parse_dates=["alarm_onset_ts"])

# Severity by primary diagnosis
print(summary.groupby("primary_dx_group")[
    ["apache2_score", "sofa_score", "episode_duration_days"]
].mean().round(2))

# Alarm volume by ICU unit
print(summary.groupby("icu_unit_type")["alarms_per_patient_day"].mean())

Hugging Face Datasets

from datasets import load_dataset

ds = load_dataset("xpertsystems/hlt009-sample", data_files={
    "vitals":      "vitals_timeseries.csv",
    "alarms":      "alarm_events.csv",
    "interventions": "interventions.csv",
    "summary":     "episode_summary.csv",
})
print(ds)

Vital sign trajectory plot

import pandas as pd
import matplotlib.pyplot as plt

vitals = pd.read_csv("vitals_timeseries.csv", parse_dates=["timestamp"])

# Plot HR + SpO2 trajectory for one episode
ep_id = vitals["episode_id"].iloc[0]
ep = vitals[vitals["episode_id"] == ep_id].sort_values("timestamp")

fig, (ax1, ax2) = plt.subplots(2, 1, figsize=(10, 6), sharex=True)
ax1.plot(ep["timestamp"], ep["hr_bpm"], color="#c44")
ax1.set_ylabel("HR (bpm)")
ax1.axhline(120, ls="--", color="grey", alpha=0.5)  # HIGH_HR threshold
ax2.plot(ep["timestamp"], ep["spo2_pct"], color="#4488ff")
ax2.set_ylabel("SpO2 (%)")
ax2.axhline(90, ls="--", color="grey", alpha=0.5)   # LOW_SPO2 threshold
ax2.set_xlabel("Time")
plt.suptitle(f"Vitals for episode {ep_id}")
plt.show()

Deterioration prediction baseline

import pandas as pd
import numpy as np
from sklearn.ensemble import GradientBoostingClassifier
from sklearn.model_selection import train_test_split

vitals = pd.read_csv("vitals_timeseries.csv", parse_dates=["timestamp"])
summary = pd.read_csv("episode_summary.csv")

# Build a feature matrix at episode level from first-4h vitals
first_4h_features = []
for ep_id, ep in vitals.groupby("episode_id"):
    ep_sorted = ep.sort_values("timestamp")
    # Use first 48 timesteps = first 4 hours at 5-min resolution
    first_4h = ep_sorted.head(48)
    if len(first_4h) >= 12:
        first_4h_features.append({
            "episode_id": ep_id,
            "hr_mean": first_4h["hr_bpm"].mean(),
            "hr_std":  first_4h["hr_bpm"].std(),
            "spo2_min": first_4h["spo2_pct"].min(),
            "rr_max":   first_4h["rr_bpm"].max(),
            "news2_max_first4h": first_4h["news2_score"].max(),
            "news2_mean_first4h": first_4h["news2_score"].mean(),
        })

feats = pd.DataFrame(first_4h_features).merge(
    summary[["episode_id", "apache2_score", "sofa_score", "cci_score",
             "ventilation_status", "deterioration_6h_label"]],
    on="episode_id"
)

X = feats.drop(["episode_id", "deterioration_6h_label"], axis=1).fillna(0)
y = feats["deterioration_6h_label"]
if y.nunique() > 1:
    Xtr, Xte, ytr, yte = train_test_split(X, y, test_size=0.3, random_state=42)
    m = GradientBoostingClassifier(random_state=42).fit(Xtr, ytr)
    print(f"6h deterioration AUC: {m.score(Xte, yte):.3f}")

Alarm fatigue analysis

import pandas as pd

summary = pd.read_csv("episode_summary.csv")
alarms = pd.read_csv("alarm_events.csv")

# Fatigue index by trajectory
print(summary.groupby("trajectory")[
    ["alarms_per_patient_day", "true_alarm_rate", "alarm_override_rate",
     "fatigue_index_score"]
].mean().round(3))

# False alarm subtypes
print(alarms[alarms["true_alarm_flag"] == 0]["false_alarm_subtype"]
      .value_counts())

Suggested use cases

  • 6-hour deterioration prediction — predict deterioration_6h_label from first-N-hour vitals + summary features
  • Alarm fatigue research — analyze actionable vs nuisance alarm patterns, build false-alarm classifiers
  • Sepsis prediction — train models on vital trajectories + qSOFA + NEWS2 trends
  • ICU mortality risk — predict in_hospital_mortality from baseline severity + early vital features
  • Mechanical ventilation prediction — predict ventilation onset from vital trajectories
  • NEWS2 / qSOFA validation — test calibration of early warning scores in ML-augmented pipelines
  • Signal quality / artifact classification — train artifact detectors using sqi_* and artifact_flag labels
  • Time-series anomaly detection — vital sign outlier detection, change-point detection
  • Multi-stream time-series modeling — joint LSTM/Transformer modeling on 12 simultaneous vital streams
  • Alarm cascade analysis — alarm propagation and crash-cart event prediction
  • Healthcare AI MLOps — pipeline testing for streaming ICU data, real-time inference rehearsal
  • Educational use in critical care medicine and biomedical engineering

Sample vs. full product

Aspect This sample Full HLT-009 product
Episodes 25 10,000+ (default) up to 1M
Settings ICU only mixed (ICU + RPM) configurable
Time resolution 5-min 1-min or 5-min
Schema identical identical
Calibration identical identical
License CC-BY-NC-4.0 Commercial license

The full product unlocks:

  • Up to 1M episodes for production-grade deterioration / sepsis / alarm fatigue model training
  • RPM (Remote Patient Monitoring) episodes with multi-week outpatient monitoring (7-91 days)
  • 1-min resolution for high-frequency analysis
  • Mixed ICU+RPM for cross-care-setting model training
  • Commercial use rights

Contact us for the full product.


Limitations & honest disclosures

  • Sample is preview-only. 25 episodes × ~27K timesteps is enough to demonstrate schema and calibration, but is not statistically sufficient for training deterioration prediction or sepsis classifiers. Use the full product (10K+ episodes) for serious ML work.
  • ICU-only in this sample, not mixed setting. RPM episodes average 7-91 days × 288 timesteps/day = ~14K rows each, which would push the sample past 20 MB. The full product supports mixed ICU + RPM cohorts.
  • Sample is on the larger side (5.3 MB) because continuous vital sign data has natural fan-out — each multi-day ICU episode produces ~1,000-3,000 timesteps at 5-min resolution. The full product scales linearly with episode count.
  • Alarm priority diversity limited at this sample scale. The schema supports 4 priority levels (LOW/MEDIUM/HIGH/CRITICAL per IEC 60601-1-8), but at n=25 only MEDIUM+HIGH alarm types fire reliably. CRITICAL alarms (CRITICAL_LOW_HR, APNEA, CRITICAL_LOW_SPO2) require extreme physiology that's rare in stable cohorts. LOW priority alarms (HIGH_CVP, HIGH_CO) are also rare. The full product produces all 4 levels at scale.
  • Vital signs are simulated, not real waveform data. Each timestep value is sampled from physiologically-realistic distributions calibrated to MIMIC-IV ranges. This is appropriate for ML algorithm development, but does NOT capture the full beat-to-beat waveform variability of real continuous monitoring. Real waveforms exhibit autocorrelation, R-R interval variability, and respiratory modulation that this synthetic data does not fully reproduce.
  • 5-minute resolution, not beat-to-beat. The full product supports 1-min resolution; production ICU monitors sample at 125-500 Hz (waveform-level). For HRV / arrhythmia / respiratory waveform analysis, real waveform data is required.
  • Mortality rate runs slightly low at this sample size (4-16% vs MIMIC-IV target 8-15%). At n=25 episodes this is 1-4 deaths total, so seed-to-seed variance is high. The full product hits 10-12% mortality reliably.
  • Ventilation rate runs slightly high (~50% vs target 30-45%). This is a generator parameter (is_ventilated = rng.random() < 0.42) — the actual draw varies seed-to-seed.
  • Synthetic, not derived from real ICU records. Vital sign distributions, alarm patterns, and severity scores follow published critical care references but do NOT reflect any specific real patient cohort.

Ethical use guidance

This dataset is designed for:

  • ICU deterioration prediction methodology development
  • Alarm fatigue research and false-alarm classifier development
  • Sepsis / NEWS2 / qSOFA validation methodology
  • Continuous monitoring AI pipeline testing
  • Educational use in critical care medicine and biomedical informatics
  • Healthcare AI pretraining for time-series clinical prediction

This dataset is not appropriate for:

  • Making clinical decisions about real patients
  • FDA-regulated AI/SaMD device training (use real de-identified clinical data)
  • Real-time alarm system tuning without separate validation
  • Discriminatory analyses targeting protected demographic groups

Companion datasets in the Healthcare vertical

  • HLT-001 — Synthetic Patient Population (5K patients × 79 cols, CDC/NHANES calibrated)
  • HLT-002 — Synthetic EHR Dataset (4K encounters + FHIR R4 bundles)
  • HLT-003 — Synthetic Clinical Trial Dataset (3 endpoint types + power sweep)
  • HLT-004 — Synthetic Disease Progression Dataset (NSCLC + Heart Failure longitudinal)
  • HLT-005 — Synthetic Hospital Admission Dataset (5K admissions + bed utilization)
  • HLT-006 — Synthetic Medical Imaging Dataset (1K studies + COCO annotations + reports)
  • HLT-007 — Synthetic Drug Response Dataset (3K patient-treatments × 25 drug classes + PGx + PK)
  • HLT-008 — Synthetic Healthcare Claims Dataset (500 members + 30K claims + fraud labels)
  • HLT-009 — Synthetic Continuous Vital Sign Monitoring Dataset (you are here)

Use HLT-001 through HLT-009 together for the full healthcare ML data stack: population → EHR → trials → progression → hospital ops → imaging → pharmacology → claims → continuous monitoring.


Citation

If you use this dataset, please cite:

@dataset{xpertsystems_hlt009_sample_2026,
  author       = {XpertSystems.ai},
  title        = {HLT-009 Synthetic Continuous Vital Sign Monitoring Dataset (Sample Preview)},
  year         = 2026,
  publisher    = {Hugging Face},
  url          = {https://huggingface.co/datasets/xpertsystems/hlt009-sample}
}

Contact

Sample License: CC-BY-NC-4.0 (Creative Commons Attribution-NonCommercial 4.0) Full product License: Commercial — please contact for pricing.

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