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BioNLP-Clinical-Rs-Raw
This dataset contains raw clinical text data before processing.
Dataset Description
BioNLP-Clinical-Rs-Raw is the source data used to create the BioNLP-Clinical-Rs dataset, adopted from the original MIMIC-III dataset.
Data Format
Each entry contains:
text: Raw clinical note textentities: Extracted medical entitiessource: Original data source reference
Processing Pipeline
Data is processed through our clinical NLP pipeline which utilizes:
- PubMedBERT for text understanding
- UMLS concept mapping
Related Resources
- BioNLP-Clinical-Rs (processed version)
- Clinical NER benchmark datasets
Citation
Please cite this dataset as: Johnson, A., Pollard, T., & Mark, R. (2016). MIMIC-III Clinical Database (version 1.4). PhysioNet. https://doi.org/10.13026/C2XW26
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