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biomap-research-contact_prediction_binary

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Split (12)

train · 12k rows

id large_stringlengths 33 37	sequence large_stringlengths 40 2.08k	targets large listlengths 144 12.6k	split large_stringclasses 1 value
contact_prediction_binary_train_0	QNLLKNLAASLGRKPFVADKQGVYRLTIDKHLVMLAPHGSELVLRTPIDAPMLREGNNVNVTLLRSLMQQALAWAKRYPQTLVLDDCGQLVLEARLRLQELDTHGLQEVINKQLALLEHLIPQLTP	[ [ 0, 0 ], [ 0, 1 ], [ 0, 2 ], [ 0, 3 ], [ 0, 4 ], [ 0, 17 ], [ 0, 21 ], [ 0, 23 ], [ 0, 34 ], [ 0, 36 ], [ 1, 1 ], [ 1, 2 ], [ 1, 3 ], [ 1, 4 ], [ ...	train
contact_prediction_binary_train_1	LYFQGAMALEEIKNGTDISTLDIRKFNLNINNVSVLSKSQSVDQFHLSNPHYEYLSGGAYPGEMENFTLKVDKSKKQDQVFENPLSLKFTNIGTVNGKQVDAYLNFNKVTLHYLNTAQAESEMNSAQKSTVEFFSISELWESNAFEIGNVPYVDANHDYIMNKAFWIDADVTAEIRYADGTETDLKLVMKPTDIDAIDANNLKETFYVKNYQNDVNLRLMNNANVLVQEEASDRTSWIATQITGGSYNENNVSGLALRSNSNSMNFGYSSTETCSAVFGLYIEKIDPRPVLEVDPAEIPAKDGQDVTYKATFKVPVPGKD...	[ [ 0, 0 ], [ 0, 1 ], [ 0, 2 ], [ 0, 3 ], [ 0, 4 ], [ 0, 372 ], [ 1, 1 ], [ 1, 2 ], [ 1, 3 ], [ 1, 4 ], [ 1, 323 ], [ 1, 325 ], [ 2, 2 ], [ 2, 3 ], [ ...	train
contact_prediction_binary_train_2	MYLEKLQQWRYATADFSGAHITDDVLDKLLNTTRLTASSYGLQPYCTLVIRNKGLREQLVNHSFGQQKVADSSALVIFAAKTGAVADIVDPYISELSQQRQLTNEEAENTRNYFTQKLQAMSAATRKEWAVRQAYIGLGTFLLAAAELEVDSCPMEGIEHDAYDNILSLKDLGLSTVFACPVGYRSEADTTQFQKKVRQPLSRFKVVL	[ [ 0, 0 ], [ 0, 1 ], [ 0, 2 ], [ 0, 3 ], [ 0, 4 ], [ 1, 1 ], [ 1, 2 ], [ 1, 3 ], [ 1, 4 ], [ 1, 5 ], [ 2, 2 ], [ 2, 3 ], [ 2, 4 ], [ 2, 5 ], [ 2,...	train
contact_prediction_binary_train_3	PLMLDTAPNAFDDQYEGCVNKMEEKAPLLLQEDFNMNAKLKVAWEEAKKRWNNIKPSRSYPKGFNDFHGTALVAYTGSIAVDFNRAVREFKENPGQFHYKAFHYYLTRALQLLSNGDCHSVYRGTKTRFHYTGAGSVRFGQFTSSSLSKKVAQSQEFFSDHGTLFIIKTCLGVYIKEFSFRPDQEEVLIPGYEVYQKVRTQGYNEIFLDSPKRKKSNYNCLYS	[ [ 0, 0 ], [ 0, 1 ], [ 0, 2 ], [ 0, 126 ], [ 0, 127 ], [ 0, 128 ], [ 0, 129 ], [ 1, 1 ], [ 1, 2 ], [ 1, 3 ], [ 1, 126 ], [ 1, 127 ], [ 1, 128 ], [ 1, 129...	train
contact_prediction_binary_train_4	RPFRPFQSQYRWPGVDLLAYKEESAPFRSVTRQVLFSGNGLTGELRYFEVGPGGHSTLERHQHAHGVMILKGRGHAMVGRAVSAVAPYDLVTIPGWSWHQFRAPADEALGFLCMVNAERDKPQLPTEADLAMLRADDAVAAFLDGLAG	[ [ 0, 0 ], [ 0, 1 ], [ 0, 2 ], [ 0, 3 ], [ 1, 1 ], [ 1, 2 ], [ 2, 2 ], [ 2, 3 ], [ 2, 4 ], [ 3, 3 ], [ 3, 4 ], [ 4, 4 ], [ 4, 5 ], [ 4, 6 ], [ 4,...	train
contact_prediction_binary_train_5	EAIKKLVGLQAKTAVVIRDGKEIAVPVEEVAVGDIVIVRPGEKIPVDGVVVEGESYVDESMISGEPVPVLKSKGDEVFGATINNTGVLKIRATRVGGETLLAQIVKLVEDAMG	[ [ 0, 0 ], [ 0, 1 ], [ 0, 3 ], [ 0, 4 ], [ 1, 1 ], [ 1, 2 ], [ 1, 3 ], [ 1, 4 ], [ 1, 5 ], [ 2, 2 ], [ 2, 3 ], [ 2, 4 ], [ 2, 5 ], [ 2, 6 ], [ 2,...	train
contact_prediction_binary_train_6	STHFDVIVVGAGSMGMAAGYQLAKQGVKTLLVDAFDPPHTNGSHHGDTRIIRHAYGEGREYVPLALRSQELWYELEKETHHKIFTKTGVLVFGPKGESAFVAETMEAAKEHSLTVDLLEGDEINKRWPGITVPENYNAIFEPNSGVLFSENCIRAYRELAEARGAKVLTHTRVEDFDISPDSVKIETANGSYTADKLIVSMGAWNSKLLSKLNLDIPLQPYRQVVGFFESDESKYSNDIDFPGFMVEVPNGIYYGFPSFGGCGLKLGYHTFGQKIDPDTINREFGVYPEDESNLRAFLEEYMPGANGELKRGAVCMYTKT...	[ [ 0, 0 ], [ 0, 1 ], [ 1, 1 ], [ 1, 2 ], [ 1, 3 ], [ 1, 191 ], [ 2, 2 ], [ 2, 3 ], [ 2, 192 ], [ 2, 193 ], [ 3, 3 ], [ 3, 4 ], [ 3, 5 ], [ 3, 6 ], [ ...	train
contact_prediction_binary_train_7	GGFAQIYTVKAGDSIYSIAKQFRIDAGKIIRANELPNPNQLVIGQSMVIPINGTYYTVKAGDTIWKVGRKLGVSYQAIANANNVSVTAPLTPGRRILIPPSPNKRNGEFLGYVETSNRKITPQTEKMINQNAKYLTYLGPANFEVQKDGSLKAPPLNNLGSIAKENDVIFLMVLANIENGAFSDEVGRAILNNKDVQDTLLNNIVKTAKEQNFRDIHFDFEFLRPADKEAYIAFLQKAKKRLQDEQLLMSVALAPKTSRDQKGKWYEAHDYKAIGEIANFVVPMTYEGGPPMAVSPIGPVRDVLEYAVSEIPSSKIIMGQ...	[ [ 0, 0 ], [ 0, 1 ], [ 0, 2 ], [ 0, 3 ], [ 0, 388 ], [ 0, 391 ], [ 0, 392 ], [ 0, 421 ], [ 1, 1 ], [ 1, 2 ], [ 1, 3 ], [ 1, 52 ], [ 1, 53 ], [ 2, 2 ], ...	train
contact_prediction_binary_train_8	EPLAAGAVILRRFAFNAAEQLIRDINDVASQSPFRQMVTPGGYTMSVAMTNCGHLGWTTHRQGYLYSPIDPQTNKPWPAMPQSFHNLCQRAATAAGYPDFQPDACLINRYAPGAKLSLHQDKDEPDLRAPIVSVSLGLPAIFQFGGLKRNDPLKRLLLEHGDVVVWGGESRLFYHGIQPLKAGFHPLTIDCRYNLTFRQAGKKENLY	[ [ 0, 0 ], [ 0, 1 ], [ 1, 1 ], [ 1, 2 ], [ 1, 3 ], [ 1, 4 ], [ 1, 5 ], [ 1, 6 ], [ 2, 2 ], [ 2, 3 ], [ 2, 6 ], [ 2, 8 ], [ 2, 153 ], [ 2, 155 ], [ ...	train
contact_prediction_binary_train_9	AWVDQTPRTATKETGESLTINCVLRDASFELKDTGWYRTKLGSTNEQSISIGGRYVETVNKGSKSFSLRISDLRVEDSGTYKCQAFYVFFAEDVGSNKGAIIGLMVGGVVIGGEKGAGTALTVKAA	[ [ 0, 0 ], [ 0, 1 ], [ 0, 2 ], [ 0, 23 ], [ 0, 24 ], [ 0, 25 ], [ 0, 26 ], [ 0, 27 ], [ 0, 28 ], [ 0, 95 ], [ 0, 97 ], [ 0, 98 ], [ 0, 113 ], [ 1, 1 ],...	train
contact_prediction_binary_train_10	YDRKLFAKLRKLRKSIADESNVPPYVVFNDATLIEMAEQMPITASEMLSVNGVGMRKLERFGKPFMALIRAHVDGD	[ [ 0, 0 ], [ 0, 1 ], [ 0, 2 ], [ 0, 5 ], [ 0, 36 ], [ 0, 37 ], [ 1, 1 ], [ 1, 2 ], [ 1, 3 ], [ 1, 4 ], [ 1, 5 ], [ 1, 36 ], [ 1, 39 ], [ 1, 71 ], [ ...	train
contact_prediction_binary_train_11	MKRLSLREAWPYLKDLQQDPLAVLLAWGRAHPRLFLPLPRFPLALIFDPEGVEGALLAEGTTKATFQYRALSRLTGRGLLTDWGESWKEARKALKDPFLPKNVRGYREAMEEEARAFFGEWRGEERDLDHEMLALSLRLLGRALFGKPLSPSLAEHALKALDRIMAQTRSPLALLDLAAEARFRKDRGALYREAEALIVHPPLSHLPRERALSEAVTLLVAGHETVASALTWSFLLLSHRPDWQKRVAESEEAALAAFQEALRLYPPAWILTRRLERPLLLGEDRLPPGTTLVLSPYVTQRLHFPDGEAFRPERFLEERG...	[ [ 0, 0 ], [ 0, 1 ], [ 0, 2 ], [ 0, 30 ], [ 0, 31 ], [ 0, 32 ], [ 0, 33 ], [ 0, 34 ], [ 0, 43 ], [ 0, 283 ], [ 1, 1 ], [ 1, 2 ], [ 1, 3 ], [ 1, 29 ], ...	train
contact_prediction_binary_train_12	MIYTVTFNPSIDYVIFTNDFKIDGLNRATATYKFAGGKGINVSRVLKTLDVESTALGFAGGFPGKFIIDTLNNSAIQSNFIEVDEDTRINVKLKTGQETEINAPGPHITSTQFEQLLQQIKNTTSEDIVIVAGSVPSSIPSDAYAQIAQITAQTGAKLVVDAEKELAESVLPYHPLFIKPNKDELEVMFNTTVNSDADVIKYGRLLVDKGAQSVIVSLGGDGAIYIDKEISIKAVNPQGKVVNTVGSGDSTVAGMVAGIASGLSIEKAFQQAVACGTATAFDEDLATRDAIEKIKSQVTISVLDGE	[ [ 0, 0 ], [ 0, 1 ], [ 0, 2 ], [ 0, 51 ], [ 0, 52 ], [ 0, 53 ], [ 0, 122 ], [ 0, 126 ], [ 0, 127 ], [ 1, 1 ], [ 1, 2 ], [ 1, 3 ], [ 1, 45 ], [ 1, 50 ],...	train
contact_prediction_binary_train_13	CTCVPPHPQTAFCNSDLVIRAKFVQTTLYQRYEIKMTKMYKGFIRFVYTPAMESVCGYFHRSHNRSEEFLIAGKLQDGLLHITTCSFVAPWNSLSLAQRRGFTKTYTVGCEECTVFPCLSIPCKLQSGTHCLWTDQLLQGSEKGFQSRHLACLPREPGLCTWQS	[ [ 0, 0 ], [ 0, 1 ], [ 0, 2 ], [ 0, 52 ], [ 0, 53 ], [ 0, 54 ], [ 0, 55 ], [ 0, 56 ], [ 0, 82 ], [ 0, 83 ], [ 0, 84 ], [ 1, 1 ], [ 1, 2 ], [ 2, 2 ], ...	train
contact_prediction_binary_train_14	RIRLTKDGRCIITCKTVEVYADESMTVDTPRTTFTGDVEIQKGLGVKGKSQFDSNITAPDAIINGKSTDKH	[ [ 0, 0 ], [ 0, 1 ], [ 0, 2 ], [ 0, 10 ], [ 0, 11 ], [ 0, 12 ], [ 0, 13 ], [ 1, 1 ], [ 1, 2 ], [ 1, 3 ], [ 1, 9 ], [ 1, 10 ], [ 1, 11 ], [ 1, 12 ], [...	train

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Check out the documentation for more information.

contact_prediction_binary

Sourced from biomap-research/contact_prediction_binary and prepared for Hugging Face datasets usage.

Data files

Parquet files are stored under data/ using Hugging Face split naming conventions (train-*, validation-*, test-*).

Preparation

Preprocess mode: minimal.
Seed: 1957723.
No max sequence length filter was applied.
Renamed source columns: label -> targets, seq -> sequence.
Columns: id, sequence, targets, split.
Validation handling: upstream-provided validation split was preserved; configured seed was 1957723.
Split subsets: canonical train/validation/test preserve the downloaded source splits; _random, _stratified, and _cluster suffixes select pooled alternative partitions generated with seed 1957723. Each pooled partition reuses the canonical split sizes.

Sequence clustering

Configured settings used for cluster-based split assignment:

Minimum sequence identity (--min-seq-id): 0.3
Minimum coverage (-c): 0.8
Threads: 1
Seed (cluster ordering / tie-breaking): 1957723

Split sizes

test: 1505 rows
test_cluster: 1505 rows
test_random: 1505 rows
test_stratified: 1505 rows
train: 12041 rows
train_cluster: 12041 rows
train_random: 12041 rows
train_stratified: 12041 rows
validation: 1505 rows
validation_cluster: 1505 rows
validation_random: 1505 rows
validation_stratified: 1505 rows

Loading

from datasets import load_dataset

ds = load_dataset("<owner>/<repo>")
print(ds)

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