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The recipient underwent an uncomplicated conventional LT without the use of a veno-venous bypass. There were no periods of hypoxia or severe hypotension during transplantation. The cold ischemic time of the graft was 8 hours while the warm ischemic time was 45 minutes. The graft reperfused well and no biopsies were tak... | [
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At the time of LT, the international normalization ratio (INR) was 1.53, while serum total bilirubin was 103 μmol/L . On postoperative day 2 the patient had a peak of his serum AST and at this point he had further biochemical evidence of primary graft dysfunction, with inability to normalize his INR , and with progress... | [
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A 55-year-old man of Greek origin underwent LT at our institution for ethanol and hepatitis B related cirrhosis, as well as a large hepatocellular carcinoma. The patient did not have a history suggestive of hyperparathyroidism or abnormal calcium metabolism, and upon listing his serum ionized calcium was 0.94 mmol/L. T... | [
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In the present case report, we have shown that these events can take place in human subjects following liver transplantation. To our knowledge these are the first reported cases in the literature of liver calcification following liver transplantation, presumably secondary to I/R injury. Not only did both patients have ... | [
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In September 2000, a 35-year-old female without any history or clinical stigmata of NF-1 presented to her primary physician with complaints of a dull, localized left upper leg pain of several months' duration. An abdominal mass was palpated during a physical examination. Magnetic resonance imaging (MRI) as well as a co... | [
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A 43-year-old woman with a history of schizophrenia since 1982, and a history of hospitalization to help the patient to acquire social communication abilities, at the age of 23 presented with slight pain on her left flank and back. In 1995, she was treated with ureterolysis and ureteroureterostomy because of left-sided... | [
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The patient initially received glucocorticoid treatment to which she showed a temporary response until 6 months later when she relapsed. She was subsequently started on danazol without any clinical benefit. Intravenous immune globulin administration also proved ineffective after two 5-day cycles. As a result, the patie... | [
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Herein, we describe a case of a man, who had an accident at work and 1 week later developed lymphocutaneous infection caused by N. brasiliensis . | [
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On admission, routine laboratory investigations showed only elevated white blood cell count (12,400/mm 3 ), while red blood cell count, haemoglobin, chemistry and urine analysis were within normal limits. Radiography of the bones of his left hand revealed fractures of the nail bones of the middle and the ring finger. S... | [
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Physical examination revealed multiple erythematous subcutaneous nodules along the lymphatics extending up the patient's left forearm. These nodules were tender and painful. There was no regional lymphadenopathy. Debridement of the lesions was performed and the tissue was submitted for bacterial and fungal cultures. Th... | [
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After 5 days of incubation cultures of the pus and the tissue on Columbia blood agar grew white colonies adherent to the agar, rough with a velvety surface, having a characteristic mouldy odor . Colonial characteristics, physiological properties and biochemical tests performed identified the isolate as Nocardia brasili... | [
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The present case is consistent with the classical presentation of lymphocutaneous infection with a primary lesion at the site of injury on the hand and an ascending lymphangitis involving the forearm. The inoculation probably occurred from the cotton that had been contaminated by Nocardia and entered the wound after th... | [
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Check out the documentation for more information.
PubMed Clinical Cases with SapBERT Embeddings
This dataset contains clinical case narratives extracted from PubMed, processed and enriched with SapBERT embeddings. Each entry represents a clinical scenario, providing a rich source of biomedical text data with associated vector representations.
The embeddings were generated using the cambridgeltl/SapBERT-from-PubMedBERT-fulltext model, a powerful biomedical text encoder, applied to the text field of the original dataset.
Dataset Structure
The dataset is provided as a Parquet file and contains the following columns:
text: The original clinical case narrative from PubMed.subfield: (If available in the original dataset) The medical subfield associated with the case.embedding: A 768-dimensional vector embedding generated by SapBERT for the correspondingtext.
Dataset Creation
The dataset was created by:
- Loading clinical case narratives from the
rntc/open-clinical-cases-pubmeddataset on Hugging Face. - Preprocessing the text data, including handling missing values and removing duplicates.
- Generating embeddings for the
textfield using thecambridgeltl/SapBERT-from-PubMedBERT-fulltextmodel. - Combining the original data with the generated embeddings.
- Saving the resulting dataset as a Parquet file.
Usage
This dataset can be used for various biomedical natural language processing tasks, such as:
- Semantic search and retrieval of clinical cases.
- Clustering and analysis of clinical case narratives.
- Training or fine-tuning downstream models for tasks like clinical entity recognition, relation extraction, or question answering.
Licensing
The licensing of this dataset is based on the original source data from PubMed and the rntc/open-clinical-cases-pubmed dataset. Please refer to the original sources for specific licensing information.
Citation
Please cite the original PubMed sources and the SapBERT model if you use this dataset.
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