messages listlengths 3 3 |
|---|
[
{
"role": "system",
"content": "Decide whether this text chunk states a CONCRETE\nparasite/pathogen<->host association: a specific pathogen infecting,\nisolated from, or detected in a specific animal host species/group —\nINCLUDING negative findings (host sampled, pathogen NOT detected =\nno_detection).\nOu... |
[
{
"role": "system",
"content": "Decide whether this text chunk states a CONCRETE\nparasite/pathogen<->host association: a specific pathogen infecting,\nisolated from, or detected in a specific animal host species/group —\nINCLUDING negative findings (host sampled, pathogen NOT detected =\nno_detection).\nOu... |
[
{
"role": "system",
"content": "You are the System-1 triage layer for an ellipsoidal niche-model\ncampaign (88 temperature-precipitation variable pairs per species,\nsame likelihood, AIC/BIC ranking, 30-yr ERA5 normals, GBIF cells).\n\nGiven one species' fit-diagnostics JSON, emit the action:\n\n- accept: a... |
[
{
"role": "system",
"content": "Decide whether this text chunk states a CONCRETE\nparasite/pathogen<->host association: a specific pathogen infecting,\nisolated from, or detected in a specific animal host species/group —\nINCLUDING negative findings (host sampled, pathogen NOT detected =\nno_detection).\nOu... |
[
{
"role": "system",
"content": "You extract parasite/pathogen<->host relations from abstracts.\nYou are given PubTator3 species annotations (text -> NCBI TaxID).\nFor EVERY pathogen-host relation stated in the text, output one JSON\nobject in a list:\n{\"parasite_taxid\": str|int, \"host_taxid\": str|int,\n... |
[
{
"role": "system",
"content": "Decide whether this text chunk states a CONCRETE\nparasite/pathogen<->host association: a specific pathogen infecting,\nisolated from, or detected in a specific animal host species/group —\nINCLUDING negative findings (host sampled, pathogen NOT detected =\nno_detection).\nOu... |
[
{
"role": "system",
"content": "You are the System-1 triage layer for an ellipsoidal niche-model\ncampaign (88 temperature-precipitation variable pairs per species,\nsame likelihood, AIC/BIC ranking, 30-yr ERA5 normals, GBIF cells).\n\nGiven one species' fit-diagnostics JSON, emit the action:\n\n- accept: a... |
[
{
"role": "system",
"content": "Decide whether this text chunk states a CONCRETE\nparasite/pathogen<->host association: a specific pathogen infecting,\nisolated from, or detected in a specific animal host species/group —\nINCLUDING negative findings (host sampled, pathogen NOT detected =\nno_detection).\nOu... |
[
{
"role": "system",
"content": "You are the System-1 triage layer for an ellipsoidal niche-model\ncampaign (88 temperature-precipitation variable pairs per species,\nsame likelihood, AIC/BIC ranking, 30-yr ERA5 normals, GBIF cells).\n\nGiven one species' fit-diagnostics JSON, emit the action:\n\n- accept: a... |
[
{
"role": "system",
"content": "You are the System-1 triage layer for an ellipsoidal niche-model\ncampaign (88 temperature-precipitation variable pairs per species,\nsame likelihood, AIC/BIC ranking, 30-yr ERA5 normals, GBIF cells).\n\nGiven one species' fit-diagnostics JSON, emit the action:\n\n- accept: a... |
[
{
"role": "system",
"content": "You are the System-1 triage layer for an ellipsoidal niche-model\ncampaign (88 temperature-precipitation variable pairs per species,\nsame likelihood, AIC/BIC ranking, 30-yr ERA5 normals, GBIF cells).\n\nGiven one species' fit-diagnostics JSON, emit the action:\n\n- accept: a... |
[
{
"role": "system",
"content": "You are the System-1 triage layer for an ellipsoidal niche-model\ncampaign (88 temperature-precipitation variable pairs per species,\nsame likelihood, AIC/BIC ranking, 30-yr ERA5 normals, GBIF cells).\n\nGiven one species' fit-diagnostics JSON, emit the action:\n\n- accept: a... |
[
{
"role": "system",
"content": "You are the System-1 triage layer for an ellipsoidal niche-model\ncampaign (88 temperature-precipitation variable pairs per species,\nsame likelihood, AIC/BIC ranking, 30-yr ERA5 normals, GBIF cells).\n\nGiven one species' fit-diagnostics JSON, emit the action:\n\n- accept: a... |
[
{
"role": "system",
"content": "You are the System-1 triage layer for an ellipsoidal niche-model\ncampaign (88 temperature-precipitation variable pairs per species,\nsame likelihood, AIC/BIC ranking, 30-yr ERA5 normals, GBIF cells).\n\nGiven one species' fit-diagnostics JSON, emit the action:\n\n- accept: a... |
[
{
"role": "system",
"content": "Decide whether this text chunk states a CONCRETE\nparasite/pathogen<->host association: a specific pathogen infecting,\nisolated from, or detected in a specific animal host species/group —\nINCLUDING negative findings (host sampled, pathogen NOT detected =\nno_detection).\nOu... |
[
{
"role": "system",
"content": "You are the System-1 triage layer for an ellipsoidal niche-model\ncampaign (88 temperature-precipitation variable pairs per species,\nsame likelihood, AIC/BIC ranking, 30-yr ERA5 normals, GBIF cells).\n\nGiven one species' fit-diagnostics JSON, emit the action:\n\n- accept: a... |
[
{
"role": "system",
"content": "You extract parasite/pathogen<->host relations from abstracts.\nYou are given PubTator3 species annotations (text -> NCBI TaxID).\nFor EVERY pathogen-host relation stated in the text, output one JSON\nobject in a list:\n{\"parasite_taxid\": str|int, \"host_taxid\": str|int,\n... |
[
{
"role": "system",
"content": "You are the System-1 triage layer for an ellipsoidal niche-model\ncampaign (88 temperature-precipitation variable pairs per species,\nsame likelihood, AIC/BIC ranking, 30-yr ERA5 normals, GBIF cells).\n\nGiven one species' fit-diagnostics JSON, emit the action:\n\n- accept: a... |
[
{
"role": "system",
"content": "You are the System-1 triage layer for an ellipsoidal niche-model\ncampaign (88 temperature-precipitation variable pairs per species,\nsame likelihood, AIC/BIC ranking, 30-yr ERA5 normals, GBIF cells).\n\nGiven one species' fit-diagnostics JSON, emit the action:\n\n- accept: a... |
[
{
"role": "system",
"content": "You are the System-1 triage layer for an ellipsoidal niche-model\ncampaign (88 temperature-precipitation variable pairs per species,\nsame likelihood, AIC/BIC ranking, 30-yr ERA5 normals, GBIF cells).\n\nGiven one species' fit-diagnostics JSON, emit the action:\n\n- accept: a... |
[
{
"role": "system",
"content": "Decide whether this text chunk states a CONCRETE\nparasite/pathogen<->host association: a specific pathogen infecting,\nisolated from, or detected in a specific animal host species/group —\nINCLUDING negative findings (host sampled, pathogen NOT detected =\nno_detection).\nOu... |
[
{
"role": "system",
"content": "You are the System-1 triage layer for an ellipsoidal niche-model\ncampaign (88 temperature-precipitation variable pairs per species,\nsame likelihood, AIC/BIC ranking, 30-yr ERA5 normals, GBIF cells).\n\nGiven one species' fit-diagnostics JSON, emit the action:\n\n- accept: a... |
[
{
"role": "system",
"content": "You are the System-1 triage layer for an ellipsoidal niche-model\ncampaign (88 temperature-precipitation variable pairs per species,\nsame likelihood, AIC/BIC ranking, 30-yr ERA5 normals, GBIF cells).\n\nGiven one species' fit-diagnostics JSON, emit the action:\n\n- accept: a... |
[
{
"role": "system",
"content": "You extract parasite/pathogen<->host relations from abstracts.\nYou are given PubTator3 species annotations (text -> NCBI TaxID).\nFor EVERY pathogen-host relation stated in the text, output one JSON\nobject in a list:\n{\"parasite_taxid\": str|int, \"host_taxid\": str|int,\n... |
[
{
"role": "system",
"content": "You are the System-1 triage layer for an ellipsoidal niche-model\ncampaign (88 temperature-precipitation variable pairs per species,\nsame likelihood, AIC/BIC ranking, 30-yr ERA5 normals, GBIF cells).\n\nGiven one species' fit-diagnostics JSON, emit the action:\n\n- accept: a... |
[
{
"role": "system",
"content": "You are the System-1 triage layer for an ellipsoidal niche-model\ncampaign (88 temperature-precipitation variable pairs per species,\nsame likelihood, AIC/BIC ranking, 30-yr ERA5 normals, GBIF cells).\n\nGiven one species' fit-diagnostics JSON, emit the action:\n\n- accept: a... |
[
{
"role": "system",
"content": "You are the System-1 triage layer for an ellipsoidal niche-model\ncampaign (88 temperature-precipitation variable pairs per species,\nsame likelihood, AIC/BIC ranking, 30-yr ERA5 normals, GBIF cells).\n\nGiven one species' fit-diagnostics JSON, emit the action:\n\n- accept: a... |
[
{
"role": "system",
"content": "Decide whether this text chunk states a CONCRETE\nparasite/pathogen<->host association: a specific pathogen infecting,\nisolated from, or detected in a specific animal host species/group —\nINCLUDING negative findings (host sampled, pathogen NOT detected =\nno_detection).\nOu... |
[
{
"role": "system",
"content": "You are the System-1 triage layer for an ellipsoidal niche-model\ncampaign (88 temperature-precipitation variable pairs per species,\nsame likelihood, AIC/BIC ranking, 30-yr ERA5 normals, GBIF cells).\n\nGiven one species' fit-diagnostics JSON, emit the action:\n\n- accept: a... |
[
{
"role": "system",
"content": "Decide whether this text chunk states a CONCRETE\nparasite/pathogen<->host association: a specific pathogen infecting,\nisolated from, or detected in a specific animal host species/group —\nINCLUDING negative findings (host sampled, pathogen NOT detected =\nno_detection).\nOu... |
[
{
"role": "system",
"content": "Decide whether this text chunk states a CONCRETE\nparasite/pathogen<->host association: a specific pathogen infecting,\nisolated from, or detected in a specific animal host species/group —\nINCLUDING negative findings (host sampled, pathogen NOT detected =\nno_detection).\nOu... |
[
{
"role": "system",
"content": "Decide whether this text chunk states a CONCRETE\nparasite/pathogen<->host association: a specific pathogen infecting,\nisolated from, or detected in a specific animal host species/group —\nINCLUDING negative findings (host sampled, pathogen NOT detected =\nno_detection).\nOu... |
[
{
"role": "system",
"content": "You are the System-1 triage layer for an ellipsoidal niche-model\ncampaign (88 temperature-precipitation variable pairs per species,\nsame likelihood, AIC/BIC ranking, 30-yr ERA5 normals, GBIF cells).\n\nGiven one species' fit-diagnostics JSON, emit the action:\n\n- accept: a... |
[
{
"role": "system",
"content": "You are the System-1 triage layer for an ellipsoidal niche-model\ncampaign (88 temperature-precipitation variable pairs per species,\nsame likelihood, AIC/BIC ranking, 30-yr ERA5 normals, GBIF cells).\n\nGiven one species' fit-diagnostics JSON, emit the action:\n\n- accept: a... |
[
{
"role": "system",
"content": "You are the System-1 triage layer for an ellipsoidal niche-model\ncampaign (88 temperature-precipitation variable pairs per species,\nsame likelihood, AIC/BIC ranking, 30-yr ERA5 normals, GBIF cells).\n\nGiven one species' fit-diagnostics JSON, emit the action:\n\n- accept: a... |
[
{
"role": "system",
"content": "You are the System-1 triage layer for an ellipsoidal niche-model\ncampaign (88 temperature-precipitation variable pairs per species,\nsame likelihood, AIC/BIC ranking, 30-yr ERA5 normals, GBIF cells).\n\nGiven one species' fit-diagnostics JSON, emit the action:\n\n- accept: a... |
[
{
"role": "system",
"content": "You are the System-1 triage layer for an ellipsoidal niche-model\ncampaign (88 temperature-precipitation variable pairs per species,\nsame likelihood, AIC/BIC ranking, 30-yr ERA5 normals, GBIF cells).\n\nGiven one species' fit-diagnostics JSON, emit the action:\n\n- accept: a... |
[
{
"role": "system",
"content": "You are the System-1 triage layer for an ellipsoidal niche-model\ncampaign (88 temperature-precipitation variable pairs per species,\nsame likelihood, AIC/BIC ranking, 30-yr ERA5 normals, GBIF cells).\n\nGiven one species' fit-diagnostics JSON, emit the action:\n\n- accept: a... |
[
{
"role": "system",
"content": "Decide whether this text chunk states a CONCRETE\nparasite/pathogen<->host association: a specific pathogen infecting,\nisolated from, or detected in a specific animal host species/group —\nINCLUDING negative findings (host sampled, pathogen NOT detected =\nno_detection).\nOu... |
[
{
"role": "system",
"content": "Decide whether this text chunk states a CONCRETE\nparasite/pathogen<->host association: a specific pathogen infecting,\nisolated from, or detected in a specific animal host species/group —\nINCLUDING negative findings (host sampled, pathogen NOT detected =\nno_detection).\nOu... |
[
{
"role": "system",
"content": "You are the System-1 triage layer for an ellipsoidal niche-model\ncampaign (88 temperature-precipitation variable pairs per species,\nsame likelihood, AIC/BIC ranking, 30-yr ERA5 normals, GBIF cells).\n\nGiven one species' fit-diagnostics JSON, emit the action:\n\n- accept: a... |
[
{
"role": "system",
"content": "You are the System-1 triage layer for an ellipsoidal niche-model\ncampaign (88 temperature-precipitation variable pairs per species,\nsame likelihood, AIC/BIC ranking, 30-yr ERA5 normals, GBIF cells).\n\nGiven one species' fit-diagnostics JSON, emit the action:\n\n- accept: a... |
[
{
"role": "system",
"content": "You extract parasite/pathogen<->host relations from abstracts.\nYou are given PubTator3 species annotations (text -> NCBI TaxID).\nFor EVERY pathogen-host relation stated in the text, output one JSON\nobject in a list:\n{\"parasite_taxid\": str|int, \"host_taxid\": str|int,\n... |
[
{
"role": "system",
"content": "Decide whether this text chunk states a CONCRETE\nparasite/pathogen<->host association: a specific pathogen infecting,\nisolated from, or detected in a specific animal host species/group —\nINCLUDING negative findings (host sampled, pathogen NOT detected =\nno_detection).\nOu... |
[
{
"role": "system",
"content": "Decide whether this text chunk states a CONCRETE\nparasite/pathogen<->host association: a specific pathogen infecting,\nisolated from, or detected in a specific animal host species/group —\nINCLUDING negative findings (host sampled, pathogen NOT detected =\nno_detection).\nOu... |
[
{
"role": "system",
"content": "You extract parasite/pathogen<->host relations from abstracts.\nYou are given PubTator3 species annotations (text -> NCBI TaxID).\nFor EVERY pathogen-host relation stated in the text, output one JSON\nobject in a list:\n{\"parasite_taxid\": str|int, \"host_taxid\": str|int,\n... |
[
{
"role": "system",
"content": "You are the System-1 triage layer for an ellipsoidal niche-model\ncampaign (88 temperature-precipitation variable pairs per species,\nsame likelihood, AIC/BIC ranking, 30-yr ERA5 normals, GBIF cells).\n\nGiven one species' fit-diagnostics JSON, emit the action:\n\n- accept: a... |
[
{
"role": "system",
"content": "Decide whether this text chunk states a CONCRETE\nparasite/pathogen<->host association: a specific pathogen infecting,\nisolated from, or detected in a specific animal host species/group —\nINCLUDING negative findings (host sampled, pathogen NOT detected =\nno_detection).\nOu... |
[
{
"role": "system",
"content": "You are the System-1 triage layer for an ellipsoidal niche-model\ncampaign (88 temperature-precipitation variable pairs per species,\nsame likelihood, AIC/BIC ranking, 30-yr ERA5 normals, GBIF cells).\n\nGiven one species' fit-diagnostics JSON, emit the action:\n\n- accept: a... |
[
{
"role": "system",
"content": "Decide whether this text chunk states a CONCRETE\nparasite/pathogen<->host association: a specific pathogen infecting,\nisolated from, or detected in a specific animal host species/group —\nINCLUDING negative findings (host sampled, pathogen NOT detected =\nno_detection).\nOu... |
[
{
"role": "system",
"content": "You extract parasite/pathogen<->host relations from abstracts.\nYou are given PubTator3 species annotations (text -> NCBI TaxID).\nFor EVERY pathogen-host relation stated in the text, output one JSON\nobject in a list:\n{\"parasite_taxid\": str|int, \"host_taxid\": str|int,\n... |
[
{
"role": "system",
"content": "You are the System-1 triage layer for an ellipsoidal niche-model\ncampaign (88 temperature-precipitation variable pairs per species,\nsame likelihood, AIC/BIC ranking, 30-yr ERA5 normals, GBIF cells).\n\nGiven one species' fit-diagnostics JSON, emit the action:\n\n- accept: a... |
[
{
"role": "system",
"content": "Decide whether this text chunk states a CONCRETE\nparasite/pathogen<->host association: a specific pathogen infecting,\nisolated from, or detected in a specific animal host species/group —\nINCLUDING negative findings (host sampled, pathogen NOT detected =\nno_detection).\nOu... |
[
{
"role": "system",
"content": "You are the System-1 triage layer for an ellipsoidal niche-model\ncampaign (88 temperature-precipitation variable pairs per species,\nsame likelihood, AIC/BIC ranking, 30-yr ERA5 normals, GBIF cells).\n\nGiven one species' fit-diagnostics JSON, emit the action:\n\n- accept: a... |
[
{
"role": "system",
"content": "You are the System-1 triage layer for an ellipsoidal niche-model\ncampaign (88 temperature-precipitation variable pairs per species,\nsame likelihood, AIC/BIC ranking, 30-yr ERA5 normals, GBIF cells).\n\nGiven one species' fit-diagnostics JSON, emit the action:\n\n- accept: a... |
[
{
"role": "system",
"content": "You are the System-1 triage layer for an ellipsoidal niche-model\ncampaign (88 temperature-precipitation variable pairs per species,\nsame likelihood, AIC/BIC ranking, 30-yr ERA5 normals, GBIF cells).\n\nGiven one species' fit-diagnostics JSON, emit the action:\n\n- accept: a... |
[
{
"role": "system",
"content": "Decide whether this text chunk states a CONCRETE\nparasite/pathogen<->host association: a specific pathogen infecting,\nisolated from, or detected in a specific animal host species/group —\nINCLUDING negative findings (host sampled, pathogen NOT detected =\nno_detection).\nOu... |
[
{
"role": "system",
"content": "Decide whether this text chunk states a CONCRETE\nparasite/pathogen<->host association: a specific pathogen infecting,\nisolated from, or detected in a specific animal host species/group —\nINCLUDING negative findings (host sampled, pathogen NOT detected =\nno_detection).\nOu... |
[
{
"role": "system",
"content": "You are the System-1 triage layer for an ellipsoidal niche-model\ncampaign (88 temperature-precipitation variable pairs per species,\nsame likelihood, AIC/BIC ranking, 30-yr ERA5 normals, GBIF cells).\n\nGiven one species' fit-diagnostics JSON, emit the action:\n\n- accept: a... |
[
{
"role": "system",
"content": "You are the System-1 triage layer for an ellipsoidal niche-model\ncampaign (88 temperature-precipitation variable pairs per species,\nsame likelihood, AIC/BIC ranking, 30-yr ERA5 normals, GBIF cells).\n\nGiven one species' fit-diagnostics JSON, emit the action:\n\n- accept: a... |
[
{
"role": "system",
"content": "You are the System-1 triage layer for an ellipsoidal niche-model\ncampaign (88 temperature-precipitation variable pairs per species,\nsame likelihood, AIC/BIC ranking, 30-yr ERA5 normals, GBIF cells).\n\nGiven one species' fit-diagnostics JSON, emit the action:\n\n- accept: a... |
[
{
"role": "system",
"content": "You are the System-1 triage layer for an ellipsoidal niche-model\ncampaign (88 temperature-precipitation variable pairs per species,\nsame likelihood, AIC/BIC ranking, 30-yr ERA5 normals, GBIF cells).\n\nGiven one species' fit-diagnostics JSON, emit the action:\n\n- accept: a... |
[
{
"role": "system",
"content": "You are the System-1 triage layer for an ellipsoidal niche-model\ncampaign (88 temperature-precipitation variable pairs per species,\nsame likelihood, AIC/BIC ranking, 30-yr ERA5 normals, GBIF cells).\n\nGiven one species' fit-diagnostics JSON, emit the action:\n\n- accept: a... |
[
{
"role": "system",
"content": "Decide whether this text chunk states a CONCRETE\nparasite/pathogen<->host association: a specific pathogen infecting,\nisolated from, or detected in a specific animal host species/group —\nINCLUDING negative findings (host sampled, pathogen NOT detected =\nno_detection).\nOu... |
[
{
"role": "system",
"content": "Decide whether this text chunk states a CONCRETE\nparasite/pathogen<->host association: a specific pathogen infecting,\nisolated from, or detected in a specific animal host species/group —\nINCLUDING negative findings (host sampled, pathogen NOT detected =\nno_detection).\nOu... |
[
{
"role": "system",
"content": "You are the System-1 triage layer for an ellipsoidal niche-model\ncampaign (88 temperature-precipitation variable pairs per species,\nsame likelihood, AIC/BIC ranking, 30-yr ERA5 normals, GBIF cells).\n\nGiven one species' fit-diagnostics JSON, emit the action:\n\n- accept: a... |
[
{
"role": "system",
"content": "Decide whether this text chunk states a CONCRETE\nparasite/pathogen<->host association: a specific pathogen infecting,\nisolated from, or detected in a specific animal host species/group —\nINCLUDING negative findings (host sampled, pathogen NOT detected =\nno_detection).\nOu... |
[
{
"role": "system",
"content": "You extract parasite/pathogen<->host relations from abstracts.\nYou are given PubTator3 species annotations (text -> NCBI TaxID).\nFor EVERY pathogen-host relation stated in the text, output one JSON\nobject in a list:\n{\"parasite_taxid\": str|int, \"host_taxid\": str|int,\n... |
[
{
"role": "system",
"content": "You are the System-1 triage layer for an ellipsoidal niche-model\ncampaign (88 temperature-precipitation variable pairs per species,\nsame likelihood, AIC/BIC ranking, 30-yr ERA5 normals, GBIF cells).\n\nGiven one species' fit-diagnostics JSON, emit the action:\n\n- accept: a... |
End of preview. Expand in Data Studio
WildSeek SFT trajectories (Fireworks chat JSONL)
Supervised fine-tuning data for a wildlife-risk pipeline orchestrator,
built Oct–Nov 2026 during the Meta Global AI Developer Hackathon
(companion to alrobles/meta-hack).
Tasks
| Split | triage (System-1 relevance) | decide (campaign triage) | extract (typed edges) | all |
|---|---|---|---|---|
| train | 743 | 1,090 | 131 | 1,964 |
| val | 48 | 57 | 6 | 111 |
Format: one JSON object per line, {"messages": [{system?}, {user}, {assistant}]} (OpenAI chat format; Fireworks-ready).
Provenance
Rehydrated read-only from WildSeek pipeline logs (APHIS species
detections, xnicher fit diagnostics, litmine judge verdicts); grouped
splits by paper/species (seed 7) — no leakage across train/val.
Builder: wildseek-lora/builder/build_traj.py.
v2 (grouped holdout, launch-ready)
data/v2/ rebuilds the train files with the leakage fixes found in
the v1 autopsy (R18): holdout carved from grouped val (paper/species),
chunk 50/50 ±0.5, exact-dup removal, pmid concentration caps, token
budgets enforced (all 1,955 rows / eval n=111; decide 1,090 /
eval n=57). Manifests carry seed, budgets, and SHA; *_file.jsonl
is the exact Fireworks --file payload. Staged, not yet trained.
Trained adapter
triage split → LoRA r8 on muse-glimmer-30b (Fireworks Serverless
Training, 1 epoch): hold-out exact-match 0.0 → 0.70 (28-0 paired,
p≈7e-9). Full eval in lora_triage_summary.json. Adapter:
accounts/alrobles/models/muse-starter-sl-wildseek-triage-20261103-215412.
License
Data: CC-BY-4.0. Code pointers: MIT (alrobles/meta-hack).
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