text stringclasses 3
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jrc_mus_liver-6_part_5000 |
jrc_mus_liver-6_part_y_2000 |
jrc_mus_liver-6_part_z_3000 |
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Information:
Dataset ID: jrc_mus-liver-6
Source: HHMI Janelia OpenOrganelle
Sample: Liver tissue from a 10-week-old male leptin-deficient B6.Cg-Lepob/J (ob/ob) mouse on a C57BL/6J genetic background.
Native voxel size: 8 × 8 × 8 nm (z, y, x).
Native array shape: 8,501 × 8,050 × 8,000 voxels (z, y, x).
Physical extent: 68,008 × 64,400 × 64,000 nm (z, y, x).
This experiment evaluated sparse-annotation adaptation within a single specimen, volume, and acquisition session; it was not designed as an evaluation of cross-specimen or cross-volume generalization.
We randomly selected three images extracted from the xy, xz, and yz planes for training, three for validation, and three for testing.
- Training slices: x=5000, y=2000, z=3000
- Validation slices: x=7500, y=6500, z=4000
- Testing slices: x=4000, y=5000, z=6000
train datset ''' jrc_mus_liver-6_part_5000 jrc_mus_liver-6_part_y_2000 jrc_mus_liver-6_part_z_3000 '''
val dataset ''' jrc_mus_liver-6_part_7500 jrc_mus_liver-6_part_y_6500 jrc_mus_liver-6_part_z_4000 '''
test dataset ''' jrc_mus_liver-6_part_z_6000 jrc_mus_liver-6_part_4000 jrc_mus_liver-6_part_y_5000 '''
The organelles to be segmented. 0 background: [0, 0, 0] 1 ER: [128, 128, 0] 2 mito: [128, 0, 128] 3 LD: [123, 95, 213] 4 Nu: [14, 159, 38]
license: apache-2.0
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