txt stringlengths 118 146M ⌀ | __key__ stringlengths 35 100 | __url__ stringclasses 1
value |
|---|---|---|
cancer_study_identifier: chol_tcga_pan_can_atlas_2018
genetic_alteration_type: COPY_NUMBER_ALTERATION
datatype: SEG
stable_id: chol_tcga_pan_can_atlas_2018_segment
show_profile_in_analysis_tab: false
description: Segment data for the TCGA PanCanAtlas study.
profile_name: Segment data values
reference_genome_id: hg19
da... | chol_tcga_pan_can_atlas_2018/meta_cna_hg19_seg | hf://datasets/TA88/Tcga@2a19b62841902ee3b2e6a27023dcc0a4695c5acd/chol_tcga_pan_can_atlas_2018.tar.tar |
cancer_study_identifier: chol_tcga_pan_can_atlas_2018
genetic_alteration_type: MUTATION_EXTENDED
datatype: MAF
stable_id: mutations
show_profile_in_analysis_tab: true
profile_description: Mutation data from whole exome sequencing of 36 Cholangiocarcinoma samples.
profile_name: Mutations
data_filename: data_mutations.tx... | chol_tcga_pan_can_atlas_2018/meta_mutations | hf://datasets/TA88/Tcga@2a19b62841902ee3b2e6a27023dcc0a4695c5acd/chol_tcga_pan_can_atlas_2018.tar.tar |
cancer_study_identifier: chol_tcga_pan_can_atlas_2018
stable_id: rna_seq_v2_mrna_median_normals
genetic_alteration_type: MRNA_EXPRESSION
datatype: CONTINUOUS
show_profile_in_analysis_tab: FALSE
profile_name: mRNA expression of adjacent normal samples, RSEM (Batch normalized from Illumina HiSeq_RNASeqV2)
profile_descrip... | chol_tcga_pan_can_atlas_2018/normals/meta_mrna_seq_v2_rsem_normal_samples | hf://datasets/TA88/Tcga@2a19b62841902ee3b2e6a27023dcc0a4695c5acd/chol_tcga_pan_can_atlas_2018.tar.tar |
"Hugo_Symbol\tEntrez_Gene_Id\tTCGA-W5-AA2I-11\tTCGA-W5-AA2Q-11\tTCGA-W5-AA2R-11\tTCGA-W5-AA2U-11\tTC(...TRUNCATED) | chol_tcga_pan_can_atlas_2018/normals/data_mrna_seq_v2_rsem_normal_samples | "hf://datasets/TA88/Tcga@2a19b62841902ee3b2e6a27023dcc0a4695c5acd/chol_tcga_pan_can_atlas_2018.tar.t(...TRUNCATED) |
"cancer_study_identifier: chol_tcga_pan_can_atlas_2018\ngenetic_alteration_type: MRNA_EXPRESSION\nda(...TRUNCATED) | "chol_tcga_pan_can_atlas_2018/normals/meta_mrna_seq_v2_rsem_normal_samples_zscores_ref_normal_sample(...TRUNCATED) | "hf://datasets/TA88/Tcga@2a19b62841902ee3b2e6a27023dcc0a4695c5acd/chol_tcga_pan_can_atlas_2018.tar.t(...TRUNCATED) |
"Hugo_Symbol\tEntrez_Gene_Id\tTCGA-W5-AA2I-11\tTCGA-W5-AA2Q-11\tTCGA-W5-AA2R-11\tTCGA-W5-AA2U-11\tTC(...TRUNCATED) | "chol_tcga_pan_can_atlas_2018/normals/data_mrna_seq_v2_rsem_normal_samples_zscores_ref_normal_sample(...TRUNCATED) | "hf://datasets/TA88/Tcga@2a19b62841902ee3b2e6a27023dcc0a4695c5acd/chol_tcga_pan_can_atlas_2018.tar.t(...TRUNCATED) |
"cancer_study_identifier: chol_tcga_pan_can_atlas_2018\ngenetic_alteration_type: STRUCTURAL_VARIANT\(...TRUNCATED) | chol_tcga_pan_can_atlas_2018/meta_sv | "hf://datasets/TA88/Tcga@2a19b62841902ee3b2e6a27023dcc0a4695c5acd/chol_tcga_pan_can_atlas_2018.tar.t(...TRUNCATED) |
"SAMPLE_ID\tmutations\tgistic\tstructural_variants\nTCGA-3X-AAV9-01\tWXS\tWXS\tWXS\nTCGA-3X-AAVA-01\(...TRUNCATED) | chol_tcga_pan_can_atlas_2018/data_gene_panel_matrix | "hf://datasets/TA88/Tcga@2a19b62841902ee3b2e6a27023dcc0a4695c5acd/chol_tcga_pan_can_atlas_2018.tar.t(...TRUNCATED) |
"ENTITY_STABLE_ID\tNAME\tTCGA-3X-AAV9-01\tTCGA-3X-AAVA-01\tTCGA-3X-AAVB-01\tTCGA-3X-AAVC-01\tTCGA-3X(...TRUNCATED) | chol_tcga_pan_can_atlas_2018/data_genetic_ancestry | "hf://datasets/TA88/Tcga@2a19b62841902ee3b2e6a27023dcc0a4695c5acd/chol_tcga_pan_can_atlas_2018.tar.t(...TRUNCATED) |
"PATIENT_ID\tSTART_DATE\tSTOP_DATE\tEVENT_TYPE\tSTATUS\tAGE_AT_INITIAL_PATHOLOGIC_DIAGNOSIS\tPATHOLO(...TRUNCATED) | chol_tcga_pan_can_atlas_2018/data_timeline_status | "hf://datasets/TA88/Tcga@2a19b62841902ee3b2e6a27023dcc0a4695c5acd/chol_tcga_pan_can_atlas_2018.tar.t(...TRUNCATED) |
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