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Spliceformer — GTEx per-tissue test sets
Per-tissue, per-donor splice test sets used to evaluate Spliceformer across tissues.
python scripts/download_assets.py --gtex-tissues lung
python scripts/evaluate_splice.py --context 10k --ensemble --tissue lung
Tissues
brain_cortex · lung · testis · whole_blood · haec10
Layout
{tissue}/
├── ml_data_var/
│ ├── individual/test_GTEX-*.h5 per-donor test sets (~650 MB each)
│ └── combined_test.h5 all donors combined (~6.5 GB)
├── splits_config.yaml split configuration
├── splits_summary.txt
├── test_samples.txt / test_chroms.txt
└── dataset_options.txt
HDF5 layout matches the main splice datasets: paired X{i} / Y{i} chunks, with
X as one-hot DNA and Y as one-hot [neither, acceptor, donor].
How this was published
The source is a 36 GB archive that does not fit on a workstation alongside its own
contents. scripts/upload_to_hf.py --gtex-zip extracts one member at a time, uploads
it, and deletes it before moving on, so peak extra disk is the largest single member
(~6.5 GB) rather than the size of the archive. The upload is resumable — re-running
skips members already on the Hub.
Related
- Code: https://github.com/NNeuralDynamics/Spliceformer
- Weights:
SaumyaGupta-99/spliceformer-models - Main data:
SaumyaGupta-99/spliceformer-data
License
MIT
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