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Cannot load the dataset split (in streaming mode) to extract the first rows.
Error code:   StreamingRowsError
Exception:    CastError
Message:      Couldn't cast
path: string
format: string
name: string
models: int64
chains: list<item: struct<chain: string, residues: int64, protein_like_residues: int64, atoms: int64, first_ (... 115 chars omitted)
  child 0, item: struct<chain: string, residues: int64, protein_like_residues: int64, atoms: int64, first_residue: st (... 103 chars omitted)
      child 0, chain: string
      child 1, residues: int64
      child 2, protein_like_residues: int64
      child 3, atoms: int64
      child 4, first_residue: string
      child 5, last_residue: string
      child 6, missing_backbone_count: int64
      child 7, missing_backbone_examples: list<item: null>
          child 0, item: null
checks: list<item: struct<status: string, message: string>>
  child 0, item: struct<status: string, message: string>
      child 0, status: string
      child 1, message: string
warnings: list<item: null>
  child 0, item: null
copied_designs: list<item: struct<final_rank: int64, id: string, file: string>>
  child 0, item: struct<final_rank: int64, id: string, file: string>
      child 0, final_rank: int64
      child 1, id: string
      child 2, file: string
staged_design_count: int64
all_metrics_rows: int64
requested_count: int64
requested_folder_name: string
available_passing_count: int64
selection_rule: string
staged_at_utc: string
source_run: string
missing_rank_files: list<item: null>
  child 0, item: null
to
{'staged_at_utc': Value('string'), 'source_run': Value('string'), 'requested_folder_name': Value('string'), 'selection_rule': Value('string'), 'requested_count': Value('int64'), 'available_passing_count': Value('int64'), 'staged_design_count': Value('int64'), 'all_metrics_rows': Value('int64'), 'missing_rank_files': List(Value('null')), 'copied_designs': List({'final_rank': Value('int64'), 'id': Value('string'), 'file': Value('string')})}
because column names don't match
Traceback:    Traceback (most recent call last):
                File "/src/services/worker/src/worker/utils.py", line 147, in get_rows_or_raise
                  return get_rows(
                      dataset=dataset,
                  ...<4 lines>...
                      column_names=column_names,
                  )
                File "/src/libs/libcommon/src/libcommon/utils.py", line 272, in decorator
                  return func(*args, **kwargs)
                File "/src/services/worker/src/worker/utils.py", line 127, in get_rows
                  rows_plus_one = list(itertools.islice(safe_iter(ds, dataset=dataset), rows_max_number + 1))
                File "/src/services/worker/src/worker/utils.py", line 478, in safe_iter
                  yield from ds.decode(False) if ds.features else ds
                File "/usr/local/lib/python3.14/site-packages/datasets/iterable_dataset.py", line 2818, in __iter__
                  for key, example in ex_iterable:
                                      ^^^^^^^^^^^
                File "/usr/local/lib/python3.14/site-packages/datasets/iterable_dataset.py", line 2355, in __iter__
                  for key, pa_table in self._iter_arrow():
                                       ~~~~~~~~~~~~~~~~^^
                File "/usr/local/lib/python3.14/site-packages/datasets/iterable_dataset.py", line 2380, in _iter_arrow
                  for key, pa_table in self.ex_iterable._iter_arrow():
                                       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^^
                File "/usr/local/lib/python3.14/site-packages/datasets/iterable_dataset.py", line 536, in _iter_arrow
                  for key, pa_table in iterator:
                                       ^^^^^^^^
                File "/usr/local/lib/python3.14/site-packages/datasets/iterable_dataset.py", line 419, in _iter_arrow
                  for key, pa_table in self.generate_tables_fn(**gen_kwags):
                                       ~~~~~~~~~~~~~~~~~~~~~~~^^^^^^^^^^^^^
                File "/usr/local/lib/python3.14/site-packages/datasets/packaged_modules/json/json.py", line 343, in _generate_tables
                  self._cast_table(pa_table, json_field_paths=json_field_paths),
                  ~~~~~~~~~~~~~~~~^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
                File "/usr/local/lib/python3.14/site-packages/datasets/packaged_modules/json/json.py", line 132, in _cast_table
                  pa_table = table_cast(pa_table, self.info.features.arrow_schema)
                File "/usr/local/lib/python3.14/site-packages/datasets/table.py", line 2369, in table_cast
                  return cast_table_to_schema(table, schema)
                File "/usr/local/lib/python3.14/site-packages/datasets/table.py", line 2297, in cast_table_to_schema
                  raise CastError(
                  ...<3 lines>...
                  )
              datasets.table.CastError: Couldn't cast
              path: string
              format: string
              name: string
              models: int64
              chains: list<item: struct<chain: string, residues: int64, protein_like_residues: int64, atoms: int64, first_ (... 115 chars omitted)
                child 0, item: struct<chain: string, residues: int64, protein_like_residues: int64, atoms: int64, first_residue: st (... 103 chars omitted)
                    child 0, chain: string
                    child 1, residues: int64
                    child 2, protein_like_residues: int64
                    child 3, atoms: int64
                    child 4, first_residue: string
                    child 5, last_residue: string
                    child 6, missing_backbone_count: int64
                    child 7, missing_backbone_examples: list<item: null>
                        child 0, item: null
              checks: list<item: struct<status: string, message: string>>
                child 0, item: struct<status: string, message: string>
                    child 0, status: string
                    child 1, message: string
              warnings: list<item: null>
                child 0, item: null
              copied_designs: list<item: struct<final_rank: int64, id: string, file: string>>
                child 0, item: struct<final_rank: int64, id: string, file: string>
                    child 0, final_rank: int64
                    child 1, id: string
                    child 2, file: string
              staged_design_count: int64
              all_metrics_rows: int64
              requested_count: int64
              requested_folder_name: string
              available_passing_count: int64
              selection_rule: string
              staged_at_utc: string
              source_run: string
              missing_rank_files: list<item: null>
                child 0, item: null
              to
              {'staged_at_utc': Value('string'), 'source_run': Value('string'), 'requested_folder_name': Value('string'), 'selection_rule': Value('string'), 'requested_count': Value('int64'), 'available_passing_count': Value('int64'), 'staged_design_count': Value('int64'), 'all_metrics_rows': Value('int64'), 'missing_rank_files': List(Value('null')), 'copied_designs': List({'final_rank': Value('int64'), 'id': Value('string'), 'file': Value('string')})}
              because column names don't match

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1IVO_LINEARMINIPROTEIN_1k

Staged upload folder for the BoltzGen 1IVO linear miniprotein 1k run.

Source run: /workspace/MoonShot/moonshot/results/aditi-1ivo-boltzgen-binder-64aa-samples-1000

Selection: top designs with pass_filters=True, sorted by final_rank, requested limit 35.

Note: only 32 designs in the 1000-design metrics table passed all filters, so this staged folder contains 32 CIF designs rather than 35.

Contents:

  • designs/: ranked final CIF structures that passed filters.
  • top_passed_designs_metrics.csv: metrics rows for the staged designs only.
  • metadata/: source input, PDB preflight check, target file, and results overview PDF when available.
  • manifest.json: upload selection manifest.
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