SQUALL

For SQUALL pretraining, the data are available at:

https://zenodo.org/records/17318279

Please refer to the following resources for more information:

• Model source code: https://github.com/OswaldZhang/SQUALL-release
• Usage documentation: https://squall.readthedocs.io/en/latest/#/

If you encounter any problems accessing the model, feel free to open an issue on the GitHub repository or contact us directly at zongxu.zhang@stu.pku.edu.cn.

Suggestions and feedback are very welcome!

Citation

If you find SQUALL useful, please consider citing our work:

@article{zhang2026integrating,
  title   = {Integrating Histology with Spatial Molecular Programs Using a Multimodal Foundation Model},
  author  = {Zhang, Zongxu and Qin, Bowen and Zhao, Yahui and Qi, Zekun and Xu, Hanlin and Wang, Yunfeng and Zheng, Wenjin and Dai, Jiateng and Chen, Anxin and Wang, Nachuan and Nie, Lanxi and Zhang, Peng and Zhang, Haorui and Zhao, Yanping and Xu, Tian and Lin, Siyu and Ren, Pengfei and Zhang, Zhe and Xue, Liyan and Xue, Xuemin and Yang, Zhaoyang and Xu, Jiaqi and Ma, Jiahao and Pan, Deng and Wang, Cunyu and Liu, Zhihua and Meng, Yuanguang and Zeng, Zexian},
  journal = {bioRxiv},
  year    = {2026},
  doi     = {10.64898/2026.06.01.729028},
  url     = {https://doi.org/10.64898/2026.06.01.729028},
  note    = {Preprint}
}