shrishdwivedi/vmap

ViralMap

Model weights and HMM parameters for ViralMap

Contents

File	Description
best_model_fold{0-4}.pt	ESM-2 650M + MLP head checkpoints (5-fold ensemble)
vmap_hmm.npz	HMM start priors and transition matrices

Usage

See the GitHub repo for installation and full documentation.

Citation

@article{dwivedi2026viralmap,
  title={ViralMap: ViralMap: Predicting Features in Viral Proteins from Primary Sequence},
  author={Dwivedi, Shrish and Kar, Shaunak and Horton, Andrew P. and Gollihar, Jimmy D.},
  year={2026},
  doi={10.64898/2026.04.07.716565}
}