stubbs

Mouse multi-tissue RRBS age predictor: 17,992 common input loci are normalized and reduced to 329 nonzero clock sites, then quadratically calibrated.

Predicts	chronological age
Species	Mus musculus
Tissue	multi-tissue, liver, lung, heart, brain cortex, skeletal muscle, cerebellum, spleen
Data type	DNA methylation
Model type	quadratically calibrated elastic net regression
Year	2017

Use with pyaging

import pyaging as pya

pya.pred.predict_age(adata, ["stubbs"])

Browse every clock in the pyaging Clock Catalogue.

Citation

Stubbs, T. M., et al. “Multi-tissue DNA methylation age predictor in mouse.” Genome Biology 18: 68 (2017).

https://doi.org/10.1186/s13059-017-1203-5