prostatecancerkirby

Three-CpG prostate-tissue diagnostic classifier distinguishing malignant from benign-adjacent tissue; it was trained on 73 tumors and 63 benign-adjacent samples and externally validated in TCGA.

Predicts	prostate cancer
Species	Homo sapiens
Tissue	prostate
Data type	DNA methylation
Model type	logistic regression
Year	2017

Use with pyaging

import pyaging as pya

pya.pred.predict_age(adata, ["prostatecancerkirby"])

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Citation

Kirby, M. K., et al. “Genome-wide DNA methylation measurements in prostate tissues uncovers novel prostate cancer diagnostic biomarkers and transcription factor binding patterns.” BMC Cancer 17: 273 (2017).

https://doi.org/10.1186/s12885-017-3252-2