mariakrissmer/ALIAS-MB

ALIAS MB

This is the ALIAS model labeled MB in the manuscript. It is a SentenceTransformer encoder for embedding cell descriptions and biomedical text into a shared space. It is intended for research use.

Field	Value
Manuscript label	MB
Internal model ID	MG_HIAI_Tcells_S2_200k_lr5e5
Training datasets	S2_heldout_donor_semantic_200k
Base model	NeuML/pubmedbert-base-embeddings
Code and dataset provenance	ALIAS manuscript reproducibility branch

License and provenance

The ALIAS model release is MIT licensed (see LICENSE.txt). It is fine-tuned from NeuML/pubmedbert-base-embeddings, which is Apache 2.0 licensed; its license text is included as UPSTREAM_APACHE_2_0_LICENSE.txt. The model weights were modified by ALIAS training from the upstream base model.

Use

from sentence_transformers import SentenceTransformer
model = SentenceTransformer("mariakrissmer/ALIAS-MB")
embeddings = model.encode(["CD8 T cell", "cytotoxic T lymphocyte"])

This model is for exploratory research. Its training data and intended comparisons are documented in the linked repository. It has not been validated for clinical use.