m2mBERT Microbiome-to-Metabolome Explorer

Research web application for dataset-compatible metabolite prediction and signed Jacobian interpretation from microbiome abundance profiles.

Required Space variable

Set:

MODEL_REPO_ID=imranhasan01/m2mbert-models

If the model repository is private, also add an HF_TOKEN Space secret with read access to that repository.

Model repository layout

imranhasan01/m2mbert-models/
├── FRANZOSA_IBD_2019/
├── WANG_ESRD_2020/
├── ERAWIJANTARI_GASTRIC_CANCER_2020/
├── YACHIDA_CRC_2019/
├── iHMP_IBDMDB_2019/
└── MARS_IBS_2020/

Each dataset folder must contain:

model.safetensors
model_config.json
input_features.txt
output_features.txt
x_transformer.joblib
y_transformer.joblib
preprocess.json
metadata.json                  # optional

Research-use limitation

The current deployment uses dataset-specific models and exact feature matching. It is not a clinical diagnostic tool and should not be presented as validated for arbitrary external cohorts without harmonization and external validation.