Text-Attributed-Graphs

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The dataset generation failed because of a cast error

Error code:   DatasetGenerationCastError
Exception:    DatasetGenerationCastError
Message:      An error occurred while generating the dataset

All the data files must have the same columns, but at some point there are 7 new columns ({'label', 'neighbor_ids', 'category', 'len', 'url', 'node_id', 'raw_text'}) and 1 missing columns ({'name'}).

This happened while the csv dataset builder was generating data using

hf://datasets/zhuh0029/Text-Attributed-Graphs/cornell/Cornell.csv (at revision 008acc8969808a23d98a28ee80198ce6d573ff49), ['hf://datasets/zhuh0029/Text-Attributed-Graphs@008acc8969808a23d98a28ee80198ce6d573ff49/bookchild/categories.csv', 'hf://datasets/zhuh0029/Text-Attributed-Graphs@008acc8969808a23d98a28ee80198ce6d573ff49/bookhis/categories.csv', 'hf://datasets/zhuh0029/Text-Attributed-Graphs@008acc8969808a23d98a28ee80198ce6d573ff49/citeseer/categories.csv', 'hf://datasets/zhuh0029/Text-Attributed-Graphs@008acc8969808a23d98a28ee80198ce6d573ff49/cora/categories.csv', 'hf://datasets/zhuh0029/Text-Attributed-Graphs@008acc8969808a23d98a28ee80198ce6d573ff49/cornell/Cornell.csv', 'hf://datasets/zhuh0029/Text-Attributed-Graphs@008acc8969808a23d98a28ee80198ce6d573ff49/cornell/categories.csv', 'hf://datasets/zhuh0029/Text-Attributed-Graphs@008acc8969808a23d98a28ee80198ce6d573ff49/pubmed/categories.csv', 'hf://datasets/zhuh0029/Text-Attributed-Graphs@008acc8969808a23d98a28ee80198ce6d573ff49/sportsfit/categories.csv', 'hf://datasets/zhuh0029/Text-Attributed-Graphs@008acc8969808a23d98a28ee80198ce6d573ff49/texas/Texas.csv', 'hf://datasets/zhuh0029/Text-Attributed-Graphs@008acc8969808a23d98a28ee80198ce6d573ff49/texas/categories.csv', 'hf://datasets/zhuh0029/Text-Attributed-Graphs@008acc8969808a23d98a28ee80198ce6d573ff49/washington/Washington.csv', 'hf://datasets/zhuh0029/Text-Attributed-Graphs@008acc8969808a23d98a28ee80198ce6d573ff49/washington/categories.csv', 'hf://datasets/zhuh0029/Text-Attributed-Graphs@008acc8969808a23d98a28ee80198ce6d573ff49/wikics/categories.csv', 'hf://datasets/zhuh0029/Text-Attributed-Graphs@008acc8969808a23d98a28ee80198ce6d573ff49/wisconsin/Wisconsin.csv', 'hf://datasets/zhuh0029/Text-Attributed-Graphs@008acc8969808a23d98a28ee80198ce6d573ff49/wisconsin/categories.csv']

Please either edit the data files to have matching columns, or separate them into different configurations (see docs at https://hf.co/docs/hub/datasets-manual-configuration#multiple-configurations)
Traceback:    Traceback (most recent call last):
                File "/usr/local/lib/python3.12/site-packages/datasets/builder.py", line 1800, in _prepare_split_single
                  writer.write_table(table)
                File "/usr/local/lib/python3.12/site-packages/datasets/arrow_writer.py", line 765, in write_table
                  self._write_table(pa_table, writer_batch_size=writer_batch_size)
                File "/usr/local/lib/python3.12/site-packages/datasets/arrow_writer.py", line 773, in _write_table
                  pa_table = table_cast(pa_table, self._schema)
                             ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
                File "/usr/local/lib/python3.12/site-packages/datasets/table.py", line 2321, in table_cast
                  return cast_table_to_schema(table, schema)
                         ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
                File "/usr/local/lib/python3.12/site-packages/datasets/table.py", line 2249, in cast_table_to_schema
                  raise CastError(
              datasets.table.CastError: Couldn't cast
              url: string
              raw_text: string
              category: string
              node_id: int64
              label: int64
              len: int64
              neighbor_ids: string
              -- schema metadata --
              pandas: '{"index_columns": [{"kind": "range", "name": null, "start": 0, "' + 1044
              to
              {'name': Value('string')}
              because column names don't match
              
              During handling of the above exception, another exception occurred:
              
              Traceback (most recent call last):
                File "/src/services/worker/src/worker/job_runners/config/parquet_and_info.py", line 1342, in compute_config_parquet_and_info_response
                  parquet_operations, partial, estimated_dataset_info = stream_convert_to_parquet(
                                                                        ^^^^^^^^^^^^^^^^^^^^^^^^^^
                File "/src/services/worker/src/worker/job_runners/config/parquet_and_info.py", line 907, in stream_convert_to_parquet
                  builder._prepare_split(split_generator=splits_generators[split], file_format="parquet")
                File "/usr/local/lib/python3.12/site-packages/datasets/builder.py", line 1646, in _prepare_split
                  for job_id, done, content in self._prepare_split_single(
                                               ^^^^^^^^^^^^^^^^^^^^^^^^^^^
                File "/usr/local/lib/python3.12/site-packages/datasets/builder.py", line 1802, in _prepare_split_single
                  raise DatasetGenerationCastError.from_cast_error(
              datasets.exceptions.DatasetGenerationCastError: An error occurred while generating the dataset
              
              All the data files must have the same columns, but at some point there are 7 new columns ({'label', 'neighbor_ids', 'category', 'len', 'url', 'node_id', 'raw_text'}) and 1 missing columns ({'name'}).
              
              This happened while the csv dataset builder was generating data using
              
              hf://datasets/zhuh0029/Text-Attributed-Graphs/cornell/Cornell.csv (at revision 008acc8969808a23d98a28ee80198ce6d573ff49), ['hf://datasets/zhuh0029/Text-Attributed-Graphs@008acc8969808a23d98a28ee80198ce6d573ff49/bookchild/categories.csv', 'hf://datasets/zhuh0029/Text-Attributed-Graphs@008acc8969808a23d98a28ee80198ce6d573ff49/bookhis/categories.csv', 'hf://datasets/zhuh0029/Text-Attributed-Graphs@008acc8969808a23d98a28ee80198ce6d573ff49/citeseer/categories.csv', 'hf://datasets/zhuh0029/Text-Attributed-Graphs@008acc8969808a23d98a28ee80198ce6d573ff49/cora/categories.csv', 'hf://datasets/zhuh0029/Text-Attributed-Graphs@008acc8969808a23d98a28ee80198ce6d573ff49/cornell/Cornell.csv', 'hf://datasets/zhuh0029/Text-Attributed-Graphs@008acc8969808a23d98a28ee80198ce6d573ff49/cornell/categories.csv', 'hf://datasets/zhuh0029/Text-Attributed-Graphs@008acc8969808a23d98a28ee80198ce6d573ff49/pubmed/categories.csv', 'hf://datasets/zhuh0029/Text-Attributed-Graphs@008acc8969808a23d98a28ee80198ce6d573ff49/sportsfit/categories.csv', 'hf://datasets/zhuh0029/Text-Attributed-Graphs@008acc8969808a23d98a28ee80198ce6d573ff49/texas/Texas.csv', 'hf://datasets/zhuh0029/Text-Attributed-Graphs@008acc8969808a23d98a28ee80198ce6d573ff49/texas/categories.csv', 'hf://datasets/zhuh0029/Text-Attributed-Graphs@008acc8969808a23d98a28ee80198ce6d573ff49/washington/Washington.csv', 'hf://datasets/zhuh0029/Text-Attributed-Graphs@008acc8969808a23d98a28ee80198ce6d573ff49/washington/categories.csv', 'hf://datasets/zhuh0029/Text-Attributed-Graphs@008acc8969808a23d98a28ee80198ce6d573ff49/wikics/categories.csv', 'hf://datasets/zhuh0029/Text-Attributed-Graphs@008acc8969808a23d98a28ee80198ce6d573ff49/wisconsin/Wisconsin.csv', 'hf://datasets/zhuh0029/Text-Attributed-Graphs@008acc8969808a23d98a28ee80198ce6d573ff49/wisconsin/categories.csv']
              
              Please either edit the data files to have matching columns, or separate them into different configurations (see docs at https://hf.co/docs/hub/datasets-manual-configuration#multiple-configurations)

Need help to make the dataset viewer work? Make sure to review how to configure the dataset viewer, and open a discussion for direct support.

name string
Literature & Fiction
Animals
Growing Up & Facts of Life
Humor
Cars Trains & Things That Go
Fairy Tales Folk Tales & Myths
Activities Crafts & Games
Science Fiction & Fantasy
Classics
Mysteries & Detectives
Action & Adventure
Geography & Cultures
Education & Reference
Arts Music & Photography
Holidays & Celebrations
Science Nature & How It Works
Early Learning
Biographies
History
Children's Cookbooks
Religions
Sports & Outdoors
Comics & Graphic Novels
Computers & Technology
World
Americas
Asia
Military
Europe
Russia
Africa
Ancient Civilizations
Middle East
Historical Study & Educational Resources
Australia & Oceania
Arctic & Antarctica
Agents
machine learning(ML)
information retrieval (IR)
database (DB)
human-computer interaction (HCI)
artificial intelligence (AI)
Case Based
Genetic Algorithms
Neural Networks
Probabilistic Methods
Reinforcement Learning
Rule Learning
Theory
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End of preview.

Overview

This dataset covers the encoder embeddings and prediction results of LLMs of paper 'Model Generalization on Text Attribute Graphs: Principles with Lagre Language Models', Haoyu Wang, Shikun Liu, Rongzhe Wei, Pan Li.

Dataset Description

The dataset structure should be organized as follows:

/dataset/
│── [dataset_name]/
│   │── processed_data.pt    # Contains labels and graph information
│   │── [encoder]_x.pt       # Features extracted by different encoders
│   │── categories.csv       # label name raw texts
│   │── raw_texts.pt       # raw text of each node

File Descriptions

processed_data.pt: A PyTorch file storing the processed dataset, including graph structure and node labels. Note that in heterophilic datasets, thie is named as [Dataset].pt, where Dataset could be Cornell, etc, and should be opened with DGL.
[encoder]_x.pt: Feature matrices extracted using different encoders, where [encoder] represents the encoder name.
categories.csv: raw label names.
raw_texts.pt: raw node texts. Note that in heterophilic datasets, this is named as [Dataset].csv, where Dataset can be Cornell, etc.

Dataset Naming Convention

[dataset_name] should be one of the following:

cora
citeseer
pubmed
bookhis
bookchild
sportsfit
wikics
cornell
texas
wisconsin
washington

Encoder Naming Convention

[encoder] can be one of the following:

sbert (the sentence-bert encoder)
roberta (the Roberta encoder)
llmicl_primary (the vanilla LLM2Vec)
llmicl_class_aware (the task-adaptive encoder)
llmgpt_text-embedding-3-large (the embedding api text-embedding-3-large by openai)

Results Description

The ./results/ folder consists of prediction results of GPT-4o in node text classification and GPT-4o-mini in homophily ratio prediction.

./results/nc_[DATASET]/4o/llm_baseline       # node text prediction
./results/nc_[DATASET]/4o_mini/agenth        # homophily ratio prediction

Reference

If you find the data useful, please consider citing our paper:

@inproceedings{wang2025generalization,
  title={Generalization Principles for Inference over Text-Attributed Graphs with Large Language Models},
  author={Wang, Haoyu and Liu, Shikun and Wei, Rongzhe and Li, Pan},
  booktitle={Forty-second International Conference on Machine Learning},
  year={2025}
}

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