Datasets:
file_id string | queries list | query_boxes list | model list |
|---|---|---|---|
PMC1064080_00000.jpg | [
"[TEXT] genetic variant association with cancer risk",
"[TEXT] study population and design",
"[TEXT] variant frequency and family history",
"[TEXT] study conclusion and implications",
"[TEXT] genetic mutation and cancer risk",
"[TEXT] genetic variant association with disease risk"
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PMC1064093_00000.jpg | [
"[TEXT] mechanism of cell death",
"[TEXT] experimental methods and measurements",
"[TEXT] protein expression and enzyme activity detection",
"[TEXT] compound cytotoxicity and cellular effects",
"[TEXT] study conclusion and implications",
"[TEXT] tumor hypoxia and treatment resistance",
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PMC1064093_00003.jpg | [
"[TEXT] treatment cytotoxicity and efficacy comparison",
"[TEXT] cytotoxicity and cell viability response",
"[TEXT] cell apoptosis and DNA content",
"[TEXT] cell viability and proliferation assay",
"[TEXT] cell viability assay details",
"[TEXT] cell viability assessment methods",
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PMC1064093_00004.jpg | [
"[TEXT] apoptotic body formation and concentration",
"[TEXT] cellular response to compound treatment",
"[TEXT] protein expression changes after treatment",
"[TEXT] ratio correlation with cellular signal",
"[TEXT] cancer treatment and prognosis",
"[FIG] flow cytometry data analysis"
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PMC1064093_00005.jpg | [
"[TEXT] apoptosis induction and DNA analysis",
"[TEXT] apoptosis induction and DNA analysis",
"[TEXT] protein expression analysis via immunoblotting",
"[TEXT] protein expression analysis via immunoblotting",
"[FIG] cellular morphology and DNA staining",
"[FIG] cellular morphology and staining patterns",
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PMC1064093_00006.jpg | [
"[TEXT] hormone receptor pathway and cancer prognosis",
"[TEXT] tumor reductive metabolism and drug activation",
"[TEXT] cellular response to DNA damage",
"[TEXT] cytotoxicity and cell death mechanisms",
"[TEXT] enzyme activity measurement protocol",
"[TEXT] experimental treatment effect analysis",
"[FI... | [
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PMC1064098_00000.jpg | [
"[TEXT] fibroblast role in cancer development",
"[TEXT] cell co-culture and growth assessment",
"[TEXT] fibroblast effect on epithelial cell growth",
"[TEXT] study conclusion and implications",
"[TEXT] stromal components and tumor microenvironment",
"[TEXT] breast tissue structure and regulation",
"[TEX... | [
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PMC1064098_00004.jpg | [
"[TEXT] primer and probe design details",
"[TEXT] gene expression quantification method",
"[TEXT] statistical analysis and outlier handling",
"[TEXT] cell characterization and staining results",
"[TEXT] cell morphology in 3D culture",
"[TEXT] 3D co-culture morphology and structure",
"[TEXT] cell culture... | [
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PMC1064098_00006.jpg | [
"[TEXT] proliferation rate comparison",
"[TEXT] experimental variability and replication",
"[TEXT] experimental design and repetition",
"[TEXT] proliferation effects of varying ratios",
"[TEXT] cell proliferation in co-culture",
"[TABLE] cell proliferation comparison between groups",
"[FIG] cell prolife... | [
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PMC1064098_00007.jpg | [
"[TEXT] cell proliferation and viability effects",
"[TEXT] apoptosis rate and cell co-culture",
"[TEXT] expression level comparison",
"[TEXT] expression level comparison between cell types",
"[TEXT] cell proliferation and fibroblast interaction",
"[TEXT] cell proliferation and co-culture effects",
"[TAB... | [
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PMC1064098_00008.jpg | [
"[TABLE] IGF II level across cell types",
"[TABLE] IGF level changes in cell co-culture"
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PMC1064100_00000.jpg | [
"[TEXT] genetic association study design",
"[TEXT] study cohort and data sources",
"[TEXT] genetic association with disease risk",
"[TEXT] study conclusion and implications",
"[TEXT] estrogen biosynthesis and regulation",
"[TEXT] estrogen metabolism and breast cancer susceptibility",
"[TEXT] researcher ... | [
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PMC1064103_00000.jpg | [
"[TEXT] protein modulation of transcriptional activity",
"[TEXT] experimental methods and analysis",
"[TEXT] estrogen receptor regulation and activity",
"[TEXT] study conclusion and implications",
"[TEXT] hormone receptor mechanism of action",
"[TEXT] estrogen receptor function and regulation"
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PMC1064108_00000.jpg | [
"[TEXT] cancer prognosis and immunotherapy",
"[TEXT] immunotherapy and tumor prevention models",
"[TEXT] vaccination effects on tumor growth",
"[TEXT] study conclusion and implications",
"[TEXT] vaccination effectiveness and long-term immune response",
"[TEXT] breast cancer treatment and prognosis",
"[T... | [
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PMC1064108_00001.jpg | [
"[TEXT] replicon RNA synthesis and function",
"[TEXT] virus-like particle generation and characteristics",
"[TEXT] vaccine vector characteristics and advantages",
"[TEXT] vaccination effects on tumor growth",
"[TEXT] cell line maintenance and propagation",
"[TEXT] vector preparation and validation",
"[T... | [
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PMC1064108_00002.jpg | [
"[TEXT] animal model experimental procedure",
"[TEXT] experimental metastasis procedure",
"[TEXT] reagent sourcing and preparation",
"[TEXT] cell culture and irradiation protocol",
"[TEXT] cell suspension preparation and lysis",
"[TEXT] cell culture and staining protocol",
"[TEXT] flow cytometry data ac... | [
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PMC1064108_00003.jpg | [
"[TEXT] flow cytometry staining protocol",
"[TEXT] flow cytometry data analysis methods",
"[TEXT] ELISPOT assay procedure and setup",
"[TEXT] cell culture and stimulation protocol",
"[TEXT] enzyme-linked immunosorbent assay protocol",
"[TEXT] spot enumeration and confluence correction",
"[TEXT] statisti... | [
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PMC1064108_00004.jpg | [
"[TEXT] vaccination efficacy and tumor development",
"[TEXT] vaccination effect on tumor growth",
"[TEXT] vaccination effect on tumor growth",
"[TEXT] vaccination effects on disease progression",
"[FIG] flow cytometry data analysis"
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PMC1064108_00005.jpg | [
"[TEXT] vaccination effects on tumor development",
"[TEXT] antibody response to vaccination",
"[TEXT] vaccination response and immune cell analysis",
"[TEXT] intracellular cytokine staining and analysis",
"[TEXT] experimental procedure and cell analysis",
"[TEXT] tumor challenge and measurement methods",
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PMC1064108_00006.jpg | [
"[TEXT] vaccination effect on immune response",
"[TEXT] gene vaccine development and vectors",
"[TEXT] vaccine efficacy and immune response",
"[TEXT] vaccination experimental design and timeline",
"[FIG] treatment effect on tumor characteristics",
"[FIG] survival rate comparison"
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PMC1064108_00007.jpg | [
"[TEXT] gene vaccine development and results",
"[TEXT] antibody response to vaccination",
"[TEXT] vaccine immunogenicity and immune response",
"[TEXT] vaccination and tumor prevention efficacy",
"[TEXT] vaccination effects on tumor development",
"[TEXT] flow cytometry data analysis",
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PMC1064108_00008.jpg | [
"[TEXT] vaccination response and immune tolerance",
"[TEXT] vaccination response assessment",
"[TEXT] in vitro assay methods",
"[TEXT] vaccination and immune response assessment",
"[TEXT] intracellular cytokine analysis after stimulation",
"[TABLE] immune response to vaccination",
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PMC1064127_00000.jpg | [
"[TEXT] mutation risk and incidence",
"[TEXT] study methodology and cohort details",
"[TEXT] risk factor interactions",
"[TEXT] study conclusion and implications",
"[TEXT] genetic variation and disease risk",
"[TEXT] selective pressure and genetic variation",
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PMC1064127_00001.jpg | [
"[TEXT] genetic variation and disease association",
"[TEXT] genetic data analysis methods",
"[TEXT] study case and control selection",
"[TEXT] study design and data collection",
"[TEXT] haplotype association and statistical analysis methods",
"[TEXT] SNP analysis and exclusion criteria",
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PMC1064127_00002.jpg | [
"[TEXT] sequence alignment and database search methods",
"[TEXT] genetic polymorphism association study",
"[TEXT] haplotype frequency and statistical significance",
"[TEXT] haplotype association with disease risk",
"[TEXT] research design and methodology",
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PMC1064127_00003.jpg | [
"[TEXT] breast cancer risk factors",
"[TEXT] somatic alteration and genetic variation",
"[TEXT] genetic polymorphism and disease risk",
"[TEXT] study limitations and data coverage",
"[TEXT] treatment outcome measurement and comparison",
"[TEXT] learning model training data",
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PMC1064129_00000.jpg | [
"[TEXT] study rationale and objectives",
"[TEXT] experimental methods and analysis",
"[TEXT] experimental effects on cell growth",
"[TEXT] study conclusion and therapeutic potential",
"[TEXT] breast cancer mechanisms and treatment",
"[TEXT] gene expression and cancer development",
"[TEXT] cellular funct... | [
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PMC1064132_00000.jpg | [
"[TEXT] complex regulation and tumorigenesis",
"[TEXT] expression analysis and clinical correlation",
"[TEXT] expression correlation with clinical features",
"[TEXT] study conclusion and implications",
"[TEXT] cell cycle regulation and exit",
"[TEXT] protein complex composition and function",
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PMC1064136_00000.jpg | [
"[TEXT] study design and comparison",
"[TEXT] sample analysis methods",
"[TEXT] gene expression in tumor samples",
"[TEXT] protein expression in tumor tissues",
"[TEXT] protein loss and cancer progression",
"[TEXT] peripheral membrane protein composition",
"[TEXT] epithelial cell junction structure and ... | [
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PMC1064139_00000.jpg | [
"[TEXT] study design and analysis",
"[TEXT] assessment of protein expression and amplification",
"[TEXT] prognostic factor analysis and survival",
"[TEXT] study conclusion and implications",
"[TEXT] treatment response and efficacy",
"[TEXT] prognostic value and treatment efficacy",
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PMC1064139_00003.jpg | [
"[TEXT] sample comparison and validation",
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"[TEXT] genotype frequencies and group comparison",
"[TEXT] second primary cancer incidence",
"[TEXT] tobacco use and cancer risk",
"[TEXT] genotype frequency and cancer risk",
"[TEXT] genetic predisposition to secondary cancers",
"[TEXT] genotype frequency and cancer susceptibility",
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"[TEXT] protein level changes during differentiation",
"[TEXT] osteoblast differentiation and marker analysis",
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"[TEXT] gene expression during differentiation",
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"[TEXT] cell culture and maintenance protocol",
"[TEXT] osteogenic differentiation experimental procedure",
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"[TEXT] cell culture and differentiation protocol",
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"[TEXT] RNA isolation and cDNA synthesis protocol",
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"[TEXT] vaccination cost-effectiveness analysis",
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"[TEXT] study conclusion and implications",
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"[TEXT] experimental measurement procedures",
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"[TEXT] light source and detection method",
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"[TEXT] statistical analysis methods",
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"[TEXT] exercise intensity and metabolite changes",
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"[TEXT] correlation between physiological measurements",
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"[TEXT] muscle oxygenation monitoring and validation",
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"[TEXT] training volume definition",
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"[TEXT] data acquisition and reliability",
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"[TEXT] taper protocol and muscle oxygenation",
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"[TEXT] interaction effects and risk ratio approximation",
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"[TEXT] odds ratio and risk ratio interpretation",
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"[TEXT] detection rate comparison",
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"[TEXT] ultrasound image characteristics of onchocercoma nodules",
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"[TEXT] doppler technique relevance to disease detection",
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"[TEXT] ultrasound image interpretation of lesions",
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"[TEXT] gallbladder cancer incidence and presentation",
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"[TEXT] survival rates and treatment outcomes",
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"[TEXT] clinical case presentation and findings",
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"[TEXT] associated neoplasms and patient demographics",
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"[TEXT] tumor characteristics and local effects",
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"[TEXT] study background and objectives",
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"[TEXT] cellular modifications during implantation",
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"[TEXT] cell adhesion assay protocol",
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"[TEXT] immunoblotting detection method",
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"[TEXT] immunofluorescence and actin staining protocol",
"[TEXT] microscopy system and laser details",
"[TEXT] protein localization and detection methods",
"[FIG]... | [
[
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... | [
null,
null,
null,
null,
null,
null,
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] |
PMC1079928_00005.jpg | [
"[TEXT] quantitative fluorescence analysis methods",
"[FIG] cellular protein localization and distribution"
] | [
[
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null,
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PMC1079928_00006.jpg | [
"[TEXT] protein detection in cell membrane",
"[TEXT] cytoskeletal protein localization and intensity",
"[TEXT] protein localization and distribution",
"[TEXT] cellular localization of fluorescence intensity",
"[TEXT] cell adhesion to monolayers",
"[TEXT] immunoblot analysis and protein separation",
"[FI... | [
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PMC1079928_00007.jpg | [
"[TEXT] cell-cell contact morphology and dynamics",
"[TEXT] actin distribution upon cell contact",
"[TEXT] cytoskeletal organization and distribution",
"[TEXT] cellular signal distribution changes",
"[TEXT] adhesion assay and experimental comparison",
"[TEXT] cellular localization of proteins and cytoskel... | [
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PMC1079928_00008.jpg | [
"[TEXT] fiber diameter comparison",
"[TEXT] experimental treatment and observation",
"[TEXT] cellular protein distribution and activity",
"[TEXT] cytoskeletal rearrangement and cell adhesion",
"[TEXT] cellular signaling domain localization",
"[TEXT] cellular polarity and signaling pathways",
"[TEXT] cel... | [
[
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End of preview. Expand in Data Studio
PubLayNet Grounding (v1) — WORK IN PROGRESS
Status: WIP, proof-of-concept quality, and only partially annotated.
This dataset is annotations only — no images. Each row is one PubLayNet page:
file_id— the PubLayNet page filename (e.g.PMC1087887_00003.jpg); join keyqueries— LLM-written topic descriptors (e.g. "[TEXT] genetic variant association with cancer risk")query_boxes— the layout block(s) each descriptor grounds to, xyxy normalized to [0, 1]model— per-descriptor provenance, where known
queries[i], query_boxes[i] and model[i] align by index. The boxes carry
their own coordinates, so to build a (image, query, box) training sample you
only need PubLayNet's image — load PubLayNet separately and join on file_id.
Only annotated pages are included, and coverage is incomplete on purpose.
Descriptors are LLM-generated across several passes with different models
(tracked in model; many early rows predate provenance tracking and are
null) and have not been human-reviewed. Expect noise.
Base layout comes from PubLayNet (CDLA-Permissive-1.0).
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