Dataset Viewer
The dataset viewer is not available for this subset.
Cannot get the split names for the config 'default' of the dataset.
Exception:    SplitsNotFoundError
Message:      The split names could not be parsed from the dataset config.
Traceback:    Traceback (most recent call last):
                File "/usr/local/lib/python3.14/site-packages/datasets/inspect.py", line 286, in get_dataset_config_info
                  for split_generator in builder._split_generators(
                                         ~~~~~~~~~~~~~~~~~~~~~~~~~^
                      StreamingDownloadManager(base_path=builder.base_path, download_config=download_config)
                      ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
                  )
                  ^
                File "/usr/local/lib/python3.14/site-packages/datasets/packaged_modules/webdataset/webdataset.py", line 84, in _split_generators
                  raise ValueError(
                  ...<2 lines>...
                  )
              ValueError: The TAR archives of the dataset should be in WebDataset format, but the files in the archive don't share the same prefix or the same types.
              
              The above exception was the direct cause of the following exception:
              
              Traceback (most recent call last):
                File "/src/services/worker/src/worker/job_runners/config/split_names.py", line 68, in compute_split_names_from_streaming_response
                  for split in get_dataset_split_names(
                               ~~~~~~~~~~~~~~~~~~~~~~~^
                      path=dataset,
                      ^^^^^^^^^^^^^
                      config_name=config,
                      ^^^^^^^^^^^^^^^^^^^
                      token=hf_token,
                      ^^^^^^^^^^^^^^^
                  )
                  ^
                File "/usr/local/lib/python3.14/site-packages/datasets/inspect.py", line 340, in get_dataset_split_names
                  info = get_dataset_config_info(
                      path,
                  ...<6 lines>...
                      **config_kwargs,
                  )
                File "/usr/local/lib/python3.14/site-packages/datasets/inspect.py", line 291, in get_dataset_config_info
                  raise SplitsNotFoundError("The split names could not be parsed from the dataset config.") from err
              datasets.inspect.SplitsNotFoundError: The split names could not be parsed from the dataset config.

Need help to make the dataset viewer work? Make sure to review how to configure the dataset viewer, and open a discussion for direct support.

QRAFT data

Run outputs, logs and result tables of the experiments in the paper

QRAFT: Scaling coalescent-based species tree inference to one million taxa Ashrafur Rahman, Anik Saha, Md. Shamsuzzoha Bayzid (in preparation)

Software: https://github.com/risenfromashes/qraft. Licence: CC BY 4.0.

Contents

Archive Size Paper
scalability/scalability-10k.tar.gz, scalability-300k.tar.gz, scalability-1m.tar.gz 0.5, 16.8, 81.9 MB Fig. 4, SM Fig. S4
accuracy/accuracy-37-taxon.tar.gz, accuracy-astral2.tar.gz, accuracy-1k-10k.tar.gz, accuracy-astralmp-10k.tar.gz 0.2, 11.3, 1.3, 5.6 MB Fig. accuracy (a-d)
vary-ils/vary-ils.tar.gz 7.1 MB SM varying ILS
refinement-modes/refinement-modes.tar.gz 7.0 MB SM refinement modes
ablation/ablation.tar.gz 6.8 MB SM ablation table
biological/biological-udance-gene-trees-200k.tar.gz, biological-udance-gene-trees-other.tar.gz, biological-udance.tar.gz, biological-other.tar.gz 945.0, 320.7, 116.5, 3.6 MB Table 1, Fig. 7, SM biological analyses

Unpacking

cd qraft-data
sha256sum -c SHA256SUMS
for a in */*.tar.gz; do tar -xzf "$a"; done
sha256sum -c SHA256SUMS-unpacked

Files

  • MANIFEST.csv lists every file with its archive, size, sha256, experiment, method, dataset, replicate and variant.
  • timing.csv (one per experiment) has one row per run with wall time, peak memory in MiB and status. Runs that did not finish appear only as a status row.
  • paper-map.csv names the files behind each table and figure.

Not included

Input datasets are not included. Simulated data can be made with the scripts in the QRAFT repository, and the public datasets are available from their original publications. The published uDANCE trees, the GTDB r207 labels and the uDANCE CPU report are not included either. external-files.md gives their sources and sha256, so Table 1 and Fig. 7 can be recomputed.

Attribution

The wQFM-TREE trees and runs are from Rafi et al. (2025). The figure trees with published topologies carry our supports on the trees of Balaban et al. (2024), Zuntini et al. (2024), Stiller et al. (2024) and Jarvis et al. (2014).

Run records are as written, except that user names, paths and host names were replaced.

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