Datasets:

orion-agent
/

Microscopy-Dataset

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Check out the documentation for more information.

1. CellProfiler-Training (12 training modules)

Educational content with problem statements and guided solutions:

ExampleColocalization: Colocalization training
ExampleCometAssay: Comet assay training
ExampleImagingFlowCytometryObjectsInGrid: Flow cytometry training
ExamplePercentPositive: Percentage analysis training
ExampleTrackObjects: Object tracking training
ExampleWoundHealing: Wound healing training
Tutorial3DFISH: 3D FISH analysis
Tutorial3DMonolayer: 3D monolayer analysis
Tutorial3DNoiseNuclei: 3D nuclei with noise
TutorialBeginnerSegmentation: Basic segmentation
TutorialTranslocation: Protein translocation analysis
TutorialUnmix: Color deconvolution

5. CellProfiler-Testing (14 test challenges)

Testing scenarios for algorithm development and validation:

Various morphological analysis challenges
Segmentation challenges for different cell types
Colocalization testing
Speckle counting validation
Multi-nuclei segmentation tests