The dataset viewer is not available for this subset.
Exception: SplitsNotFoundError
Message: The split names could not be parsed from the dataset config.
Traceback: Traceback (most recent call last):
File "/usr/local/lib/python3.14/site-packages/datasets/inspect.py", line 286, in get_dataset_config_info
for split_generator in builder._split_generators(
~~~~~~~~~~~~~~~~~~~~~~~~~^
StreamingDownloadManager(base_path=builder.base_path, download_config=download_config)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
)
^
File "/usr/local/lib/python3.14/site-packages/datasets/packaged_modules/webdataset/webdataset.py", line 81, in _split_generators
first_examples = list(islice(pipeline, self.NUM_EXAMPLES_FOR_FEATURES_INFERENCE))
File "/usr/local/lib/python3.14/site-packages/datasets/packaged_modules/webdataset/webdataset.py", line 32, in _get_pipeline_from_tar
fs: fsspec.AbstractFileSystem = fsspec.filesystem("memory")
~~~~~~~~~~~~~~~~~^^^^^^^^^^
File "/usr/local/lib/python3.14/site-packages/fsspec/registry.py", line 302, in filesystem
cls = get_filesystem_class(protocol)
File "/usr/local/lib/python3.14/site-packages/fsspec/registry.py", line 239, in get_filesystem_class
raise ValueError(f"Protocol not known: {protocol}")
ValueError: Protocol not known: memory
The above exception was the direct cause of the following exception:
Traceback (most recent call last):
File "/src/services/worker/src/worker/job_runners/config/split_names.py", line 71, in compute_split_names_from_streaming_response
for split in get_dataset_split_names(
~~~~~~~~~~~~~~~~~~~~~~~^
path=dataset,
^^^^^^^^^^^^^
config_name=config,
^^^^^^^^^^^^^^^^^^^
token=hf_token,
^^^^^^^^^^^^^^^
)
^
File "/usr/local/lib/python3.14/site-packages/datasets/inspect.py", line 340, in get_dataset_split_names
info = get_dataset_config_info(
path,
...<6 lines>...
**config_kwargs,
)
File "/usr/local/lib/python3.14/site-packages/datasets/inspect.py", line 291, in get_dataset_config_info
raise SplitsNotFoundError("The split names could not be parsed from the dataset config.") from err
datasets.inspect.SplitsNotFoundError: The split names could not be parsed from the dataset config.Need help to make the dataset viewer work? Make sure to review how to configure the dataset viewer, and open a discussion for direct support.
seqforge validation benchmark
Byte-light fingerprint packages for seqforge's validation
benchmark. Each packages/<accession>.fingerprint.tar.gz is a head-slice of a real public dataset's
FASTQs (the first ~2000 reads per file) plus a pin carrying the whole-file identity — enough for
seqforge to reproduce the same manifest.yaml, hash and all, without the original FASTQs. This is
the growing validation set the compiler is developed against; a true held-out test set is separate.
What's here (and what's not)
- Reads: head slices only — never a whole FASTQ. Enough to fingerprint the chemistry, far too few to reconstruct the biology.
- Prose: extracted text only (
info/text/). The raw papers and their figures are not redistributed here (copyright); the packages are built withseqforge preflight --redistributable(or repacked withseqforge strip-fingerprint), which is why they are usable for harvest yet carry nothing that may not be shared.
How it is used
seqforge's eval harness pulls a package by accession (anonymous, pooch-cached — no token) and runs the
real compiler over the slice, grading the resolved library against a pre-registered expected.yaml
committed in the repo. Sample-level facts are graded from the archive's own BioSample/SRA records, also
committed in the repo. See evals/benchmark/ in the seqforge repository.
Datasets
All C. elegans (taxid 6239), chosen to span technology × prep × layout × known regressions at moderate sample size:
| accession | chemistry | notes |
|---|---|---|
| PRJNA1027859 | 10x 3' v3/v3.1 | single-nucleus neurons (the pilot demo dataset) |
| GSE274290 | BD Rhapsody WTA | the only BD-original dataset; germline |
| GSE234962 | 10x 3' v3 | motor neurons |
| GSE256266 | 10x 3' v3/v3.1 | glia across sexes; irregular filename layout |
| PRJNA658829 | 10x 3' v3 | whole-organism; equal-length read layout |
| PRJNA1195922 | 10x 3' v3/v3.1 | male single-nucleus neurons |
| GSE126954 | 10x 3' v2 | embryogenesis atlas |
The set grows as more datasets are curated.
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