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The dataset generation failed because of a cast error
Error code: DatasetGenerationCastError
Exception: DatasetGenerationCastError
Message: An error occurred while generating the dataset
All the data files must have the same columns, but at some point there are 1 new columns ({'SAMD11'}) and 1 missing columns ({'AGAATAGCAAAGGTGC-1-0'}).
This happened while the csv dataset builder was generating data using
hf://datasets/kritishukla/DE11_data/data/GSE161824_A549_KRAS.processed.genes.csv (at revision a2f5ed4e9ae8c669412a87dfe943b5eb03b20cfb), [/tmp/hf-datasets-cache/medium/datasets/52664746070426-config-parquet-and-info-kritishukla-DE11_data-bf45b6d7/hub/datasets--kritishukla--DE11_data/snapshots/a2f5ed4e9ae8c669412a87dfe943b5eb03b20cfb/data/GSE161824_A549_KRAS.processed.cells.csv (origin=hf://datasets/kritishukla/DE11_data@a2f5ed4e9ae8c669412a87dfe943b5eb03b20cfb/data/GSE161824_A549_KRAS.processed.cells.csv), /tmp/hf-datasets-cache/medium/datasets/52664746070426-config-parquet-and-info-kritishukla-DE11_data-bf45b6d7/hub/datasets--kritishukla--DE11_data/snapshots/a2f5ed4e9ae8c669412a87dfe943b5eb03b20cfb/data/GSE161824_A549_KRAS.processed.genes.csv (origin=hf://datasets/kritishukla/DE11_data@a2f5ed4e9ae8c669412a87dfe943b5eb03b20cfb/data/GSE161824_A549_KRAS.processed.genes.csv), /tmp/hf-datasets-cache/medium/datasets/52664746070426-config-parquet-and-info-kritishukla-DE11_data-bf45b6d7/hub/datasets--kritishukla--DE11_data/snapshots/a2f5ed4e9ae8c669412a87dfe943b5eb03b20cfb/data/MAPK_gene_set.csv (origin=hf://datasets/kritishukla/DE11_data@a2f5ed4e9ae8c669412a87dfe943b5eb03b20cfb/data/MAPK_gene_set.csv), /tmp/hf-datasets-cache/medium/datasets/52664746070426-config-parquet-and-info-kritishukla-DE11_data-bf45b6d7/hub/datasets--kritishukla--DE11_data/snapshots/a2f5ed4e9ae8c669412a87dfe943b5eb03b20cfb/data/PI3K-AKT-mTOR_gene_set.csv (origin=hf://datasets/kritishukla/DE11_data@a2f5ed4e9ae8c669412a87dfe943b5eb03b20cfb/data/PI3K-AKT-mTOR_gene_set.csv), /tmp/hf-datasets-cache/medium/datasets/52664746070426-config-parquet-and-info-kritishukla-DE11_data-bf45b6d7/hub/datasets--kritishukla--DE11_data/snapshots/a2f5ed4e9ae8c669412a87dfe943b5eb03b20cfb/data/cell_variant_info.csv (origin=hf://datasets/kritishukla/DE11_data@a2f5ed4e9ae8c669412a87dfe943b5eb03b20cfb/data/cell_variant_info.csv)]
Please either edit the data files to have matching columns, or separate them into different configurations (see docs at https://hf.co/docs/hub/datasets-manual-configuration#multiple-configurations)
Traceback: Traceback (most recent call last):
File "/usr/local/lib/python3.12/site-packages/datasets/builder.py", line 1887, in _prepare_split_single
writer.write_table(table)
File "/usr/local/lib/python3.12/site-packages/datasets/arrow_writer.py", line 675, in write_table
pa_table = table_cast(pa_table, self._schema)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "/usr/local/lib/python3.12/site-packages/datasets/table.py", line 2272, in table_cast
return cast_table_to_schema(table, schema)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "/usr/local/lib/python3.12/site-packages/datasets/table.py", line 2218, in cast_table_to_schema
raise CastError(
datasets.table.CastError: Couldn't cast
SAMD11: string
-- schema metadata --
pandas: '{"index_columns": [{"kind": "range", "name": null, "start": 0, "' + 374
to
{'AGAATAGCAAAGGTGC-1-0': Value('string')}
because column names don't match
During handling of the above exception, another exception occurred:
Traceback (most recent call last):
File "/src/services/worker/src/worker/job_runners/config/parquet_and_info.py", line 1347, in compute_config_parquet_and_info_response
parquet_operations = convert_to_parquet(builder)
^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "/src/services/worker/src/worker/job_runners/config/parquet_and_info.py", line 980, in convert_to_parquet
builder.download_and_prepare(
File "/usr/local/lib/python3.12/site-packages/datasets/builder.py", line 884, in download_and_prepare
self._download_and_prepare(
File "/usr/local/lib/python3.12/site-packages/datasets/builder.py", line 947, in _download_and_prepare
self._prepare_split(split_generator, **prepare_split_kwargs)
File "/usr/local/lib/python3.12/site-packages/datasets/builder.py", line 1736, in _prepare_split
for job_id, done, content in self._prepare_split_single(
^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "/usr/local/lib/python3.12/site-packages/datasets/builder.py", line 1889, in _prepare_split_single
raise DatasetGenerationCastError.from_cast_error(
datasets.exceptions.DatasetGenerationCastError: An error occurred while generating the dataset
All the data files must have the same columns, but at some point there are 1 new columns ({'SAMD11'}) and 1 missing columns ({'AGAATAGCAAAGGTGC-1-0'}).
This happened while the csv dataset builder was generating data using
hf://datasets/kritishukla/DE11_data/data/GSE161824_A549_KRAS.processed.genes.csv (at revision a2f5ed4e9ae8c669412a87dfe943b5eb03b20cfb), [/tmp/hf-datasets-cache/medium/datasets/52664746070426-config-parquet-and-info-kritishukla-DE11_data-bf45b6d7/hub/datasets--kritishukla--DE11_data/snapshots/a2f5ed4e9ae8c669412a87dfe943b5eb03b20cfb/data/GSE161824_A549_KRAS.processed.cells.csv (origin=hf://datasets/kritishukla/DE11_data@a2f5ed4e9ae8c669412a87dfe943b5eb03b20cfb/data/GSE161824_A549_KRAS.processed.cells.csv), /tmp/hf-datasets-cache/medium/datasets/52664746070426-config-parquet-and-info-kritishukla-DE11_data-bf45b6d7/hub/datasets--kritishukla--DE11_data/snapshots/a2f5ed4e9ae8c669412a87dfe943b5eb03b20cfb/data/GSE161824_A549_KRAS.processed.genes.csv (origin=hf://datasets/kritishukla/DE11_data@a2f5ed4e9ae8c669412a87dfe943b5eb03b20cfb/data/GSE161824_A549_KRAS.processed.genes.csv), /tmp/hf-datasets-cache/medium/datasets/52664746070426-config-parquet-and-info-kritishukla-DE11_data-bf45b6d7/hub/datasets--kritishukla--DE11_data/snapshots/a2f5ed4e9ae8c669412a87dfe943b5eb03b20cfb/data/MAPK_gene_set.csv (origin=hf://datasets/kritishukla/DE11_data@a2f5ed4e9ae8c669412a87dfe943b5eb03b20cfb/data/MAPK_gene_set.csv), /tmp/hf-datasets-cache/medium/datasets/52664746070426-config-parquet-and-info-kritishukla-DE11_data-bf45b6d7/hub/datasets--kritishukla--DE11_data/snapshots/a2f5ed4e9ae8c669412a87dfe943b5eb03b20cfb/data/PI3K-AKT-mTOR_gene_set.csv (origin=hf://datasets/kritishukla/DE11_data@a2f5ed4e9ae8c669412a87dfe943b5eb03b20cfb/data/PI3K-AKT-mTOR_gene_set.csv), /tmp/hf-datasets-cache/medium/datasets/52664746070426-config-parquet-and-info-kritishukla-DE11_data-bf45b6d7/hub/datasets--kritishukla--DE11_data/snapshots/a2f5ed4e9ae8c669412a87dfe943b5eb03b20cfb/data/cell_variant_info.csv (origin=hf://datasets/kritishukla/DE11_data@a2f5ed4e9ae8c669412a87dfe943b5eb03b20cfb/data/cell_variant_info.csv)]
Please either edit the data files to have matching columns, or separate them into different configurations (see docs at https://hf.co/docs/hub/datasets-manual-configuration#multiple-configurations)Need help to make the dataset viewer work? Make sure to review how to configure the dataset viewer, and open a discussion for direct support.
AGAATAGCAAAGGTGC-1-0 string |
|---|
AGGGTGAAGCTCTCGG-1-0 |
CAAGAAAAGACAAGCC-1-0 |
CTACGTCAGTGGAGAA-1-0 |
CTGAAGTGTAAAGGAG-1-0 |
CTTAACTTCTCCCTGA-1-0 |
GAATGAAGTCTTGTCC-1-0 |
GCATGCGGTTACGACT-1-0 |
TGACTTTAGAAACCAT-1-0 |
TGAGCCGAGATAGTCA-1-0 |
ACGGGCTAGGACAGCT-1-1 |
ACTATCTGTAGCAAAT-1-1 |
AGCAGCCGTTGTCTTT-1-1 |
AGGTCATGTGGTCCGT-1-1 |
CCCATACTCAGCTCGG-1-1 |
CGTCAGGGTCTCATCC-1-1 |
CTCTACGCAAGGCTCC-1-1 |
CTGAAACGTCTCATCC-1-1 |
GACTAACCAAAGCAAT-1-1 |
GACTGCGGTAAGAGAG-1-1 |
GATCGTAAGATCCCAT-1-1 |
GGACAAGAGCTGATAA-1-1 |
GGGAATGCATACTCTT-1-1 |
GTCACAAGTTTGTTTC-1-1 |
GTCCTCACATGCAACT-1-1 |
TGAGGGAAGAAGGCCT-1-1 |
TGTGTTTCAAGCGTAG-1-1 |
TTCCCAGGTCAGTGGA-1-1 |
TTGGAACAGCTAACTC-1-1 |
AACCATGTCCTTTACA-1-2 |
AACCGCGGTCTAGCCG-1-2 |
ACACCGGGTTCGAATC-1-2 |
ACAGCTAGTGTTTGGT-1-2 |
ACGCAGCTCACGAAGG-1-2 |
AGCGGTCGTCGAAAGC-1-2 |
AGGCCGTCATCGGTTA-1-2 |
CCAATCCCACGAAGCA-1-2 |
CGAGCCATCCGTCATC-1-2 |
CGCCAAGAGAATTCCC-1-2 |
CGTGTCTGTCTTGTCC-1-2 |
CGTTCTGCACGTGAGA-1-2 |
CTCAGAAGTAATCACC-1-2 |
CTCATTAGTACTTCTT-1-2 |
CTCGTACAGCGGCTTC-1-2 |
GATGAAAAGAGGTTAT-1-2 |
GCAGCCACAAGTAATG-1-2 |
GCTGCGAGTGCACGAA-1-2 |
GGACGTCGTACTCTCC-1-2 |
GGGCACTGTTAGATGA-1-2 |
GGTGTTACAAGTCATC-1-2 |
TCTATTGAGCCAGTTT-1-2 |
TCTGGAAAGAGGTAGA-1-2 |
TCTTTCCTCCCATTAT-1-2 |
TGCCAAAAGATGTGGC-1-2 |
TGCCAAATCGAATGCT-1-2 |
TTAGTTCCATCCAACA-1-2 |
TTGGCAACAGGACCCT-1-2 |
ACAGCTACACACCGAC-1-3 |
ACTGTCCCACGAGAGT-1-3 |
AGCGTATAGACCGGAT-1-3 |
AGTGGGAGTCGCGAAA-1-3 |
AGTGTCAGTCGTGGCT-1-3 |
CATATTCTCAAGAAGT-1-3 |
CTCTGGTCAAGCGCTC-1-3 |
GAACGGATCGCCTGTT-1-3 |
GACACGCCACGAGAGT-1-3 |
GACCTGGAGGGATGGG-1-3 |
GATTCAGCACAAGTAA-1-3 |
GATTCAGTCTTATCTG-1-3 |
GCGCCAAAGATCTGCT-1-3 |
GCTGCGACACAACGTT-1-3 |
GCTGCTTCAGACAAAT-1-3 |
GGACAGAAGATGTCGG-1-3 |
GGCTCGATCACCCGAG-1-3 |
GGTGAAGAGGTAGCCA-1-3 |
TAGCCGGCATAAGACA-1-3 |
TCAACGAAGTCAATAG-1-3 |
TGCTGCTGTTGCGTTA-1-3 |
TTGACTTGTGTCGCTG-1-3 |
TTGCGTCGTACATCCA-1-3 |
TTTGTCATCAAAGACA-1-3 |
ACACTGACAGAAGCAC-1-4 |
ACATGGTAGTTGCAGG-1-4 |
ACATGGTGTAAACCTC-1-4 |
ACCTTTAAGCACCGCT-1-4 |
ACGTCAAAGTACGCGA-1-4 |
ACTGCTCGTACCCAAT-1-4 |
ATAACGCCAACGATGG-1-4 |
ATCCACCTCGAACGGA-1-4 |
ATTACTCAGTGGGATC-1-4 |
ATTGGACTCCAGAAGG-1-4 |
CAACCAACAATCAGAA-1-4 |
CAACCTCCAGACAGGT-1-4 |
CAACTAGGTGTGACCC-1-4 |
CAACTAGTCTCATTCA-1-4 |
CAAGGCCTCGTCCAGG-1-4 |
CACAAACAGGCGATAC-1-4 |
CACACAAGTGCCTGGT-1-4 |
CACATTTCAGGCTCAC-1-4 |
CCCAATCGTGATGATA-1-4 |
CGGGTCAGTGGTCTCG-1-4 |
End of preview.
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