motif_type stringclasses 25
values | sequence stringlengths 7 19 | loop_seq stringlengths 1 10 | closing_5p stringclasses 16
values | closing_3p stringclasses 16
values | structure stringclasses 25
values | dG37 float64 -4.1 8.8 | dG37_motif float64 -8.2 6.7 | dH_kcal_mol float64 -48.11 16 | dS_cal_mol_K float64 -144.8 32.4 | Tm_C float64 -20 75.7 ⌀ | dG_observed float64 -4.1 8.8 | dG_preferred float64 -11.6 0 | ddG_strain float64 0 13 | evidence stringclasses 1
value | param_set stringclasses 1
value | source float64 | source_doi float64 | n_melts float64 | conditions stringclasses 1
value | n_members int64 1 2.8k | n_clusters int64 1 221 | n_pdb_entries int64 1 2.04k | example_pdb stringlengths 21 39 | n_clusters@0.5 int64 1 548 | n_clusters@0.75 int64 1 323 | n_clusters@1 int64 1 221 | n_clusters@1.5 int64 1 139 | n_clusters@2 int64 1 87 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
1x1 | AAAAA&UUUUU | AU | AA | UU | ((.(()).)) | 5.2 | 0.1 | -3.13 | -26.8 | null | 5.2 | 0 | 5.2 | PREDICTED | Turner2004 | null | null | null | 1 M NaCl, pH 7 — nearest-neighbour model, isolated duplex | 4 | 4 | 4 | 5UMD_AAAAAUUUUU_A3680_1.PDB | 4 | 4 | 4 | 3 | 2 |
1x1 | AAAAG&CUAUU | AA | AA | UU | ((.(()).)) | 3.5 | -1.1 | -10.53 | -45.2 | null | 3.5 | 0 | 3.5 | PREDICTED | Turner2004 | null | null | null | 1 M NaCl, pH 7 — nearest-neighbour model, isolated duplex | 2 | 2 | 2 | 7PAQ_AAAAGUUAUC_'5'593_1.PDB | 2 | 2 | 2 | 1 | 1 |
1x1 | AAAAG&CUCUU | AC | AA | UU | ((.(()).)) | 3.5 | -1.1 | -10.53 | -45.2 | null | 3.5 | 0 | 3.5 | PREDICTED | Turner2004 | null | null | null | 1 M NaCl, pH 7 — nearest-neighbour model, isolated duplex | 102 | 2 | 102 | 3J9M_AAAAGUUCUC_A2468_1.PDB | 7 | 3 | 2 | 2 | 2 |
1x1 | AAAAU&AUAUU | AA | AA | UU | ((.(()).)) | 5 | -0.1 | -5.75 | -34.6 | null | 5 | 0 | 5 | PREDICTED | Turner2004 | null | null | null | 1 M NaCl, pH 7 — nearest-neighbour model, isolated duplex | 3 | 1 | 3 | 5MRC_AAAAUUUAUA_A1434_1.PDB | 1 | 1 | 1 | 1 | 1 |
1x1 | AAACA&UGAUU | AA | AA | UU | ((.(()).)) | 3.3 | -1.8 | -11.79 | -48.6 | null | 3.3 | 0 | 3.3 | PREDICTED | Turner2004 | null | null | null | 1 M NaCl, pH 7 — nearest-neighbour model, isolated duplex | 6 | 1 | 6 | 9V1I_AAACAUUAGU_lA1178_1.PDB | 1 | 1 | 1 | 1 | 1 |
1x1 | AAACA&UGCUU | AC | AA | UU | ((.(()).)) | 3.3 | -1.8 | -11.79 | -48.6 | null | 3.3 | 0 | 3.3 | PREDICTED | Turner2004 | null | null | null | 1 M NaCl, pH 7 — nearest-neighbour model, isolated duplex | 7 | 2 | 2 | 1JO7_AAACAUUCGU_A8_12.PDB | 3 | 3 | 2 | 2 | 1 |
1x1 | AAACG&UGUUU | AU | AA | UU | ((.(()).)) | 4 | -1.1 | -6.99 | -35.4 | null | 4 | -0.9 | 4.9 | PREDICTED | Turner2004 | null | null | null | 1 M NaCl, pH 7 — nearest-neighbour model, isolated duplex | 1 | 1 | 1 | 7PAK_AAACGUUUGU_'3'323_1.PDB | 1 | 1 | 1 | 1 | 1 |
1x1 | AAACU&AGAUU | AA | AA | UU | ((.(()).)) | 3.3 | -1.8 | -11.91 | -49 | null | 3.3 | 0 | 3.3 | PREDICTED | Turner2004 | null | null | null | 1 M NaCl, pH 7 — nearest-neighbour model, isolated duplex | 4 | 1 | 1 | 4V8P_AAACUUUAGA_'A1'611_1.PDB | 1 | 1 | 1 | 1 | 1 |
1x1 | AAAGA&UCCUU | AC | AA | UU | ((.(()).)) | 3 | -2.1 | -13.83 | -54.2 | -18 | 3 | -0.2 | 3.2 | PREDICTED | Turner2004 | null | null | null | 1 M NaCl, pH 7 — nearest-neighbour model, isolated duplex | 5 | 2 | 5 | 9V1J_AAAGAUUCCU_sa1830_1.PDB | 4 | 3 | 2 | 1 | 1 |
1x1 | AAAGA&UCUUU | AU | AA | UU | ((.(()).)) | 3 | -2.1 | -13.83 | -54.2 | -18 | 3 | -1.2 | 4.2 | PREDICTED | Turner2004 | null | null | null | 1 M NaCl, pH 7 — nearest-neighbour model, isolated duplex | 1 | 1 | 1 | 9J9H_AAAGAUUUCU_A458_1.PDB | 1 | 1 | 1 | 1 | 1 |
1x1 | AAAGC&GCAUU | AA | AA | UU | ((.(()).)) | 1.5 | -3.1 | -19.97 | -69.2 | 15.5 | 1.5 | -0.8 | 2.3 | PREDICTED | Turner2004 | null | null | null | 1 M NaCl, pH 7 — nearest-neighbour model, isolated duplex | 27 | 6 | 27 | 7P6Z_AAAGCUUACG_'3'1250_1.PDB | 23 | 13 | 6 | 2 | 2 |
1x1 | AAAGC&GCUUU | AU | AA | UU | ((.(()).)) | 1.5 | -3.1 | -19.97 | -69.2 | 15.5 | 1.5 | -2.7 | 4.2 | PREDICTED | Turner2004 | null | null | null | 1 M NaCl, pH 7 — nearest-neighbour model, isolated duplex | 5 | 2 | 5 | 6S8B_AAAGCUUUCG_V14_1.PDB | 3 | 2 | 2 | 2 | 2 |
1x1 | AAAGU&ACUUU | AU | AA | UU | ((.(()).)) | 3.2 | -1.9 | -12.82 | -51.6 | null | 3.2 | -1 | 4.2 | PREDICTED | Turner2004 | null | null | null | 1 M NaCl, pH 7 — nearest-neighbour model, isolated duplex | 2 | 2 | 2 | 7PIC_AAAGUUUUCA_'5'72_1.PDB | 2 | 2 | 2 | 1 | 1 |
1x1 | AAAUC&GACUU | AC | AA | UU | ((.(()).)) | 3.2 | -1.4 | -12.44 | -50.4 | null | 3.2 | 0 | 3.2 | PREDICTED | Turner2004 | null | null | null | 1 M NaCl, pH 7 — nearest-neighbour model, isolated duplex | 4 | 3 | 2 | 1Z7F_AAAUCUUCAG_B11_1.PDB | 4 | 4 | 3 | 1 | 1 |
1x1 | AAAUC&GAGUU | AG | AA | UU | ((.(()).)) | 3.2 | -1.4 | -12.44 | -50.4 | null | 3.2 | 0 | 3.2 | PREDICTED | Turner2004 | null | null | null | 1 M NaCl, pH 7 — nearest-neighbour model, isolated duplex | 2 | 2 | 1 | 420D_AAAUCUUGAG_A11_1.PDB | 2 | 2 | 2 | 1 | 1 |
1x1 | AAAUC&GGUUU | AU | AA | UU | ((.(()).)) | 4.1 | -0.5 | -8.32 | -40 | null | 4.1 | -0.1 | 4.2 | PREDICTED | Turner2004 | null | null | null | 1 M NaCl, pH 7 — nearest-neighbour model, isolated duplex | 1 | 1 | 1 | 6OGG_AAAUCUUUGG_'1'1505_1.PDB | 1 | 1 | 1 | 1 | 1 |
1x1 | AAAUU&AAUUU | AU | AA | UU | ((.(()).)) | 5.2 | 0.1 | -3.13 | -26.8 | null | 5.2 | 0 | 5.2 | PREDICTED | Turner2004 | null | null | null | 1 M NaCl, pH 7 — nearest-neighbour model, isolated duplex | 1 | 1 | 1 | 8ZHB_AAAUUUUUAA_LA308_1.PDB | 1 | 1 | 1 | 1 | 1 |
1x1 | AACAU&AUGUU | CG | AA | UU | ((.(()).)) | 5 | -0.1 | -5.75 | -34.6 | null | 5 | -1.2 | 6.2 | PREDICTED | Turner2004 | null | null | null | 1 M NaCl, pH 7 — nearest-neighbour model, isolated duplex | 1 | 1 | 1 | 6XN7_AACAUUUGUA_R8_1.PDB | 1 | 1 | 1 | 1 | 1 |
1x1 | AACCA&UGUUU | CU | AA | UU | ((.(()).)) | 3.3 | -1.8 | -11.79 | -48.6 | null | 3.3 | 0 | 3.3 | PREDICTED | Turner2004 | null | null | null | 1 M NaCl, pH 7 — nearest-neighbour model, isolated duplex | 4 | 1 | 4 | 8RXH_AACCAUUUGU_'S1'258_1.PDB | 3 | 1 | 1 | 1 | 1 |
1x1 | AACGA&UCCUU | CC | AA | UU | ((.(()).)) | 3 | -2.1 | -13.83 | -54.2 | -18 | 3 | 0 | 3 | PREDICTED | Turner2004 | null | null | null | 1 M NaCl, pH 7 — nearest-neighbour model, isolated duplex | 1 | 1 | 1 | 8YIH_AACGAUUCCU_C29_1.PDB | 1 | 1 | 1 | 1 | 1 |
1x1 | AACGC&GCGUU | CG | AA | UU | ((.(()).)) | 1.5 | -3.1 | -19.97 | -69.2 | 15.5 | 1.5 | -4.3 | 5.8 | PREDICTED | Turner2004 | null | null | null | 1 M NaCl, pH 7 — nearest-neighbour model, isolated duplex | 2 | 1 | 2 | 6IFL_AACGCUUGCG_I8_1.PDB | 1 | 1 | 1 | 1 | 1 |
1x1 | AACUA&UAUUU | CU | AA | UU | ((.(()).)) | 4.8 | -0.3 | -4.02 | -28.4 | null | 4.8 | 0 | 4.8 | PREDICTED | Turner2004 | null | null | null | 1 M NaCl, pH 7 — nearest-neighbour model, isolated duplex | 2 | 1 | 2 | 6J6N_AACUAUUUAU_L62_1.PDB | 1 | 1 | 1 | 1 | 1 |
1x1 | AACUC&GGAUU | CA | AA | UU | ((.(()).)) | 4.1 | -0.5 | -8.32 | -40 | null | 4.1 | 0 | 4.1 | PREDICTED | Turner2004 | null | null | null | 1 M NaCl, pH 7 — nearest-neighbour model, isolated duplex | 1 | 1 | 1 | 7LHD_AACUCUUAGG_A1926_1.PDB | 1 | 1 | 1 | 1 | 1 |
1x1 | AACUC&GGGUU | CG | AA | UU | ((.(()).)) | 4.1 | -0.5 | -8.32 | -40 | null | 4.1 | -2.1 | 6.2 | PREDICTED | Turner2004 | null | null | null | 1 M NaCl, pH 7 — nearest-neighbour model, isolated duplex | 5 | 1 | 5 | 4D5Y_AACUCUUGGG_'2'311_1.PDB | 1 | 1 | 1 | 1 | 1 |
1x1 | AACUG&CACUU | CC | AA | UU | ((.(()).)) | 3.5 | -1.1 | -10.41 | -44.8 | null | 3.5 | 0 | 3.5 | PREDICTED | Turner2004 | null | null | null | 1 M NaCl, pH 7 — nearest-neighbour model, isolated duplex | 134 | 3 | 134 | 22TU_AACUGUUCAC_'L5'1875_1.PDB | 12 | 4 | 3 | 2 | 2 |
1x1 | AACUG&CAGUU | CG | AA | UU | ((.(()).)) | 3.5 | -1.1 | -10.41 | -44.8 | null | 3.5 | -2.7 | 6.2 | PREDICTED | Turner2004 | null | null | null | 1 M NaCl, pH 7 — nearest-neighbour model, isolated duplex | 1 | 1 | 1 | 8S9V_AACUGUUGAC_F8_1.PDB | 1 | 1 | 1 | 1 | 1 |
1x1 | AACUG&CGGUU | CG | AA | UU | ((.(()).)) | 4.2 | -0.4 | -5.61 | -31.6 | null | 4.2 | -2 | 6.2 | PREDICTED | Turner2004 | null | null | null | 1 M NaCl, pH 7 — nearest-neighbour model, isolated duplex | 1 | 1 | 1 | 9RUA_AACUGUUGGC_'S2'905_1.PDB | 1 | 1 | 1 | 1 | 1 |
1x1 | AACUG&CAUUU | CU | AA | UU | ((.(()).)) | 3.5 | -1.1 | -10.41 | -44.8 | null | 3.5 | 0 | 3.5 | PREDICTED | Turner2004 | null | null | null | 1 M NaCl, pH 7 — nearest-neighbour model, isolated duplex | 271 | 5 | 230 | 3J79_AACUGUUUAC_A1265_1.PDB | 31 | 15 | 5 | 4 | 2 |
1x1 | AACUU&AACUU | CC | AA | UU | ((.(()).)) | 5.2 | 0.1 | -3.13 | -26.8 | null | 5.2 | 0 | 5.2 | PREDICTED | Turner2004 | null | null | null | 1 M NaCl, pH 7 — nearest-neighbour model, isolated duplex | 2 | 1 | 1 | 1YZ9_AACUUUUCAA_C5_1.PDB | 2 | 1 | 1 | 1 | 1 |
1x1 | AACUU&AAGUU | CG | AA | UU | ((.(()).)) | 5.2 | 0.1 | -3.13 | -26.8 | null | 5.2 | -1 | 6.2 | PREDICTED | Turner2004 | null | null | null | 1 M NaCl, pH 7 — nearest-neighbour model, isolated duplex | 2 | 2 | 2 | 6S8E_AACUUUUGAA_U41_1.PDB | 2 | 2 | 2 | 2 | 2 |
1x1 | AAGAG&CUUUU | GU | AA | UU | ((.(()).)) | 3.5 | -1.1 | -10.53 | -45.2 | null | 3.5 | -0.3 | 3.8 | PREDICTED | Turner2004 | null | null | null | 1 M NaCl, pH 7 — nearest-neighbour model, isolated duplex | 1 | 1 | 1 | 3JBN_AAGAGUUUUC_AA2742_1.PDB | 1 | 1 | 1 | 1 | 1 |
1x1 | AAGCA&UGGUU | GG | AA | UU | ((.(()).)) | 0.7 | -4.4 | -19.65 | -65.6 | 26.5 | 0.7 | -0.2 | 0.9 | PREDICTED | Turner2004 | null | null | null | 1 M NaCl, pH 7 — nearest-neighbour model, isolated duplex | 1 | 1 | 1 | 9HQV_AAGCAUUGGU_SI33_1.PDB | 1 | 1 | 1 | 1 | 1 |
1x1 | AAGCG&CGCUU | GC | AA | UU | ((.(()).)) | 2.5 | -2.1 | -15.63 | -58.4 | -5.6 | 2.5 | -4.2 | 6.7 | PREDICTED | Turner2004 | null | null | null | 1 M NaCl, pH 7 — nearest-neighbour model, isolated duplex | 1 | 1 | 1 | 7SBB_AAGCGUUCGC_X12_1.PDB | 1 | 1 | 1 | 1 | 1 |
1x1 | AAGCU&AGUUU | GU | AA | UU | ((.(()).)) | 3.3 | -1.8 | -11.91 | -49 | null | 3.3 | -1 | 4.3 | PREDICTED | Turner2004 | null | null | null | 1 M NaCl, pH 7 — nearest-neighbour model, isolated duplex | 1 | 1 | 1 | 7UO0_AAGCUUUUGA_B4_1.PDB | 1 | 1 | 1 | 1 | 1 |
1x1 | AAGGG&CCGUU | GG | AA | UU | ((.(()).)) | -1 | -5.6 | -26.25 | -81.4 | 49.3 | -1 | -1.9 | 0.9 | PREDICTED | Turner2004 | null | null | null | 1 M NaCl, pH 7 — nearest-neighbour model, isolated duplex | 1 | 1 | 1 | 7LHD_AAGGGUUGCC_A186_1.PDB | 1 | 1 | 1 | 1 | 1 |
1x1 | AAGUG&CAUUU | GU | AA | UU | ((.(()).)) | 3.5 | -1.1 | -10.41 | -44.8 | null | 3.5 | -0.4 | 3.9 | PREDICTED | Turner2004 | null | null | null | 1 M NaCl, pH 7 — nearest-neighbour model, isolated duplex | 1 | 1 | 1 | 7OOD_AAGUGUUUAC_'3'889_1.PDB | 1 | 1 | 1 | 1 | 1 |
1x1 | AAUAU&AUAUU | UA | AA | UU | ((.(()).)) | 5 | -0.1 | -5.75 | -34.6 | null | 5 | 0 | 5 | PREDICTED | Turner2004 | null | null | null | 1 M NaCl, pH 7 — nearest-neighbour model, isolated duplex | 1 | 1 | 1 | 7PIA_AAUAUUUAUA_'3'1049_1.PDB | 1 | 1 | 1 | 1 | 1 |
1x1 | AAUAU&AUUUU | UU | AA | UU | ((.(()).)) | 4.6 | -0.5 | -9.25 | -44.6 | null | 4.6 | 0 | 4.6 | PREDICTED | Turner2004 | null | null | null | 1 M NaCl, pH 7 — nearest-neighbour model, isolated duplex | 129 | 12 | 120 | 4U3M_AAUAUUUUUA_'1'3169_1.PDB | 55 | 25 | 12 | 3 | 3 |
1x1 | AAUGA&UUUUU | UU | AA | UU | ((.(()).)) | 4.5 | -0.6 | -12.57 | -55 | null | 4.5 | 0 | 4.5 | PREDICTED | Turner2004 | null | null | null | 1 M NaCl, pH 7 — nearest-neighbour model, isolated duplex | 2 | 2 | 2 | 7NRC_AAUGAUUUUU_'S2'1063_1.PDB | 2 | 2 | 2 | 2 | 2 |
1x1 | AAUGU&ACCUU | UC | AA | UU | ((.(()).)) | 3.2 | -1.9 | -12.82 | -51.6 | null | 3.2 | 0 | 3.2 | PREDICTED | Turner2004 | null | null | null | 1 M NaCl, pH 7 — nearest-neighbour model, isolated duplex | 1 | 1 | 1 | 7QGU_AAUGUUUCCA_A2125_1.PDB | 1 | 1 | 1 | 1 | 1 |
1x1 | AAUUC&GAUUU | UU | AA | UU | ((.(()).)) | 2.5 | -2.1 | -19.28 | -70.2 | 1.5 | 2.5 | 0 | 2.5 | PREDICTED | Turner2004 | null | null | null | 1 M NaCl, pH 7 — nearest-neighbour model, isolated duplex | 7 | 2 | 7 | 8A98_AAUUCUUUAG_'S1'1773_1.PDB | 2 | 2 | 2 | 2 | 2 |
1x1 | AAUUG&CAUUU | UU | AA | UU | ((.(()).)) | 2.8 | -1.8 | -17.24 | -64.6 | -6.3 | 2.8 | 0 | 2.8 | PREDICTED | Turner2004 | null | null | null | 1 M NaCl, pH 7 — nearest-neighbour model, isolated duplex | 5 | 1 | 5 | 6YWE_AAUUGUUUAC_A1713_1.PDB | 1 | 1 | 1 | 1 | 1 |
1x1 | ACAAA&UUCGU | AC | AC | GU | ((.(()).)) | 3.2 | -1.9 | -12.82 | -51.6 | null | 3.2 | 0 | 3.2 | PREDICTED | Turner2004 | null | null | null | 1 M NaCl, pH 7 — nearest-neighbour model, isolated duplex | 11 | 2 | 11 | 3J79_ACAAAUGCUU_A1862_1.PDB | 2 | 2 | 2 | 2 | 2 |
1x1 | ACAAG&UUAGU | AA | AC | GU | ((.(()).)) | 3.5 | -1.6 | -9.23 | -41 | null | 3.5 | 0 | 3.5 | PREDICTED | Turner2004 | null | null | null | 1 M NaCl, pH 7 — nearest-neighbour model, isolated duplex | 8 | 3 | 8 | 3JBN_ACAAGUGAUU_A882_1.PDB | 3 | 3 | 3 | 2 | 2 |
1x1 | ACACA&UGCGU | AC | AC | GU | ((.(()).)) | 0.4 | -4.7 | -21.32 | -70 | 31.4 | 0.4 | 0 | 0.4 | PREDICTED | Turner2004 | null | null | null | 1 M NaCl, pH 7 — nearest-neighbour model, isolated duplex | 91 | 11 | 86 | 4V7R_ACACAUGCGU_'B1'3165_1.PDB | 38 | 21 | 11 | 4 | 3 |
1x1 | ACACA&UGGGU | AG | AC | GU | ((.(()).)) | 1.3 | -3.8 | -21.35 | -73 | 19.3 | 1.3 | 0 | 1.3 | PREDICTED | Turner2004 | null | null | null | 1 M NaCl, pH 7 — nearest-neighbour model, isolated duplex | 29 | 4 | 29 | 5LZX_ACACAUGGGU_'5'5058_1.PDB | 15 | 10 | 4 | 2 | 2 |
1x1 | ACACG&CGCGU | AC | AC | GU | ((.(()).)) | -0.4 | -5 | -25.16 | -79.8 | 42.1 | -0.4 | -0.5 | 0.1 | PREDICTED | Turner2004 | null | null | null | 1 M NaCl, pH 7 — nearest-neighbour model, isolated duplex | 1 | 1 | 1 | 6ZU5_ACACGUGCGC_'S60'980_1.PDB | 1 | 1 | 1 | 1 | 1 |
1x1 | ACACG&CGGGU | AG | AC | GU | ((.(()).)) | 0.5 | -4.1 | -25.18 | -82.8 | 31 | 0.5 | 0 | 0.5 | PREDICTED | Turner2004 | null | null | null | 1 M NaCl, pH 7 — nearest-neighbour model, isolated duplex | 1 | 1 | 1 | 6R87_ACACGUGGGC_'1'2093_1.PDB | 1 | 1 | 1 | 1 | 1 |
1x1 | ACACG&CGUGU | AU | AC | GU | ((.(()).)) | 0.5 | -4.1 | -25.18 | -82.8 | 31 | 0.5 | -4.3 | 4.8 | PREDICTED | Turner2004 | null | null | null | 1 M NaCl, pH 7 — nearest-neighbour model, isolated duplex | 1 | 1 | 1 | 9J1M_ACACGUGUGC_A762_1.PDB | 1 | 1 | 1 | 1 | 1 |
1x1 | ACACU&GGCGU | AC | AC | GU | ((.(()).)) | 0.4 | -4.7 | -23.06 | -75.6 | 31.8 | 0.4 | 0 | 0.4 | PREDICTED | Turner2004 | null | null | null | 1 M NaCl, pH 7 — nearest-neighbour model, isolated duplex | 4 | 2 | 4 | 6DDD_ACACUUGCGG_'1'1161_1.PDB | 4 | 3 | 2 | 2 | 2 |
1x1 | ACAGA&UCGGU | AG | AC | GU | ((.(()).)) | 1 | -4.1 | -23.39 | -78.6 | 24.4 | 1 | 0 | 1 | PREDICTED | Turner2004 | null | null | null | 1 M NaCl, pH 7 — nearest-neighbour model, isolated duplex | 1 | 1 | 1 | 7LHD_ACAGAUGGCU_A3005_1.PDB | 1 | 1 | 1 | 1 | 1 |
1x1 | ACAGC&GCCGU | AC | AC | GU | ((.(()).)) | -0.5 | -5.1 | -29.53 | -93.6 | 42.4 | -0.5 | -0.5 | 0 | PREDICTED | Turner2004 | null | null | null | 1 M NaCl, pH 7 — nearest-neighbour model, isolated duplex | 6 | 1 | 2 | 4BTS_ACAGCUGCCG_AA1127_1.PDB | 2 | 1 | 1 | 1 | 1 |
1x1 | ACAGG&CCCGU | AC | AC | GU | ((.(()).)) | -0.4 | -5 | -27.94 | -88.8 | 41.5 | -0.4 | -0.9 | 0.5 | PREDICTED | Turner2004 | null | null | null | 1 M NaCl, pH 7 — nearest-neighbour model, isolated duplex | 12 | 6 | 10 | 4V7B_ACAGGUGCCC_AW51_1.PDB | 8 | 7 | 6 | 5 | 4 |
1x1 | ACAGG&CCGGU | AG | AC | GU | ((.(()).)) | -0.4 | -5 | -27.94 | -88.8 | 41.5 | -0.4 | -0.6 | 0.2 | PREDICTED | Turner2004 | null | null | null | 1 M NaCl, pH 7 — nearest-neighbour model, isolated duplex | 3 | 1 | 3 | 8A22_ACAGGUGGCC_'A3'5_1.PDB | 1 | 1 | 1 | 1 | 1 |
1x1 | ACAGG&CUGGU | AG | AC | GU | ((.(()).)) | 1.5 | -3.1 | -21.83 | -75.2 | 17.2 | 1.5 | -3 | 4.5 | PREDICTED | Turner2004 | null | null | null | 1 M NaCl, pH 7 — nearest-neighbour model, isolated duplex | 4 | 2 | 4 | 7JIL_ACAGGUGGUC_'1'1234_1.PDB | 2 | 2 | 2 | 2 | 2 |
1x1 | ACAGG&CCUGU | AU | AC | GU | ((.(()).)) | -0.4 | -5 | -27.94 | -88.8 | 41.5 | -0.4 | -5.1 | 4.7 | PREDICTED | Turner2004 | null | null | null | 1 M NaCl, pH 7 — nearest-neighbour model, isolated duplex | 1 | 1 | 1 | 6OLZ_ACAGGUGUCC_'B1'533_1.PDB | 1 | 1 | 1 | 1 | 1 |
1x1 | ACAUC&GAAGU | AA | AC | GU | ((.(()).)) | 1.2 | -3.4 | -22.13 | -75.2 | 21.2 | 1.2 | 0 | 1.2 | PREDICTED | Turner2004 | null | null | null | 1 M NaCl, pH 7 — nearest-neighbour model, isolated duplex | 7 | 1 | 7 | 8X9K_ACAUCUGAAG_A543_1.PDB | 2 | 2 | 1 | 1 | 1 |
1x1 | ACAUG&CACGU | AC | AC | GU | ((.(()).)) | 1.5 | -3.1 | -20.1 | -69.6 | 15.6 | 1.5 | 0 | 1.5 | PREDICTED | Turner2004 | null | null | null | 1 M NaCl, pH 7 — nearest-neighbour model, isolated duplex | 1 | 1 | 1 | 8TOC_ACAUGUGCAC_R2807_1.PDB | 1 | 1 | 1 | 1 | 1 |
1x1 | ACAUG&UGUGU | AU | AC | GU | ((.(()).)) | 4.4 | -0.7 | -15.28 | -63.4 | null | 4.4 | -1.4 | 5.8 | PREDICTED | Turner2004 | null | null | null | 1 M NaCl, pH 7 — nearest-neighbour model, isolated duplex | 1 | 1 | 1 | 8G34_ACAUGUGUGU_B354_1.PDB | 1 | 1 | 1 | 1 | 1 |
1x1 | ACCAA&UUGGU | CG | AC | GU | ((.(()).)) | 3.2 | -1.9 | -12.82 | -51.6 | null | 3.2 | -3.5 | 6.7 | PREDICTED | Turner2004 | null | null | null | 1 M NaCl, pH 7 — nearest-neighbour model, isolated duplex | 2 | 1 | 2 | 8S9U_ACCAAUGGUU_F20_1.PDB | 1 | 1 | 1 | 1 | 1 |
1x1 | ACCAG&CUGGU | CG | AC | GU | ((.(()).)) | 1.5 | -3.1 | -20.22 | -70 | 15.7 | 1.5 | -5.1 | 6.6 | PREDICTED | Turner2004 | null | null | null | 1 M NaCl, pH 7 — nearest-neighbour model, isolated duplex | 6 | 1 | 6 | 6S8B_ACCAGUGGUC_V38_1.PDB | 3 | 2 | 1 | 1 | 1 |
1x1 | ACCAG&CUUGU | CU | AC | GU | ((.(()).)) | 1.5 | -3.1 | -20.22 | -70 | 15.7 | 1.5 | 0 | 1.5 | PREDICTED | Turner2004 | null | null | null | 1 M NaCl, pH 7 — nearest-neighbour model, isolated duplex | 24 | 2 | 24 | 7Z3N_ACCAGUGUUC_'1'618_1.PDB | 2 | 2 | 2 | 2 | 2 |
1x1 | ACCAU&AUGGU | CG | AC | GU | ((.(()).)) | 3 | -2.1 | -15.44 | -59.4 | -13.2 | 3 | -3.6 | 6.6 | PREDICTED | Turner2004 | null | null | null | 1 M NaCl, pH 7 — nearest-neighbour model, isolated duplex | 1 | 1 | 1 | 8ZGR_ACCAUUGGUA_'S2'343_1.PDB | 1 | 1 | 1 | 1 | 1 |
1x1 | ACCCA&UGCGU | CC | AC | GU | ((.(()).)) | 1.3 | -3.8 | -21.35 | -73 | 19.3 | 1.3 | 0 | 1.3 | PREDICTED | Turner2004 | null | null | null | 1 M NaCl, pH 7 — nearest-neighbour model, isolated duplex | 4 | 3 | 4 | 5V7Q_ACCCAUGCGU_A1577_1.PDB | 4 | 3 | 3 | 1 | 1 |
1x1 | ACCCG&CGGGU | CG | AC | GU | ((.(()).)) | 0.5 | -4.1 | -25.18 | -82.8 | 31 | 0.5 | -6.6 | 7.1 | PREDICTED | Turner2004 | null | null | null | 1 M NaCl, pH 7 — nearest-neighbour model, isolated duplex | 5 | 1 | 5 | 4D5Y_ACCCGUGGGC_'2'2051_1.PDB | 1 | 1 | 1 | 1 | 1 |
1x1 | ACCCG&UGUGU | CU | AC | GU | ((.(()).)) | 2.1 | -3 | -16.58 | -60.2 | 2.2 | 2.1 | 0 | 2.1 | PREDICTED | Turner2004 | null | null | null | 1 M NaCl, pH 7 — nearest-neighbour model, isolated duplex | 130 | 2 | 117 | 1FJG_ACCCGUGUGU_A187_1.PDB | 15 | 4 | 2 | 1 | 1 |
1x1 | ACCCU&AGUGU | CU | AC | GU | ((.(()).)) | 1.4 | -3.7 | -21.5 | -73.8 | 18.1 | 1.4 | 0 | 1.4 | PREDICTED | Turner2004 | null | null | null | 1 M NaCl, pH 7 — nearest-neighbour model, isolated duplex | 4 | 1 | 4 | 6O8X_ACCCUUGUGA_A2207_1.PDB | 4 | 2 | 1 | 1 | 1 |
1x1 | ACCGC&GCUGU | CU | AC | GU | ((.(()).)) | -0.5 | -5.1 | -29.53 | -93.6 | 42.4 | -0.5 | -0.7 | 0.2 | PREDICTED | Turner2004 | null | null | null | 1 M NaCl, pH 7 — nearest-neighbour model, isolated duplex | 6 | 1 | 6 | 7NHN_ACCGCUGUCG_A2138_1.PDB | 6 | 1 | 1 | 1 | 1 |
1x1 | ACCGG&CCCGU | CC | AC | GU | ((.(()).)) | -0.4 | -5 | -27.94 | -88.8 | 41.5 | -0.4 | -2.9 | 2.5 | PREDICTED | Turner2004 | null | null | null | 1 M NaCl, pH 7 — nearest-neighbour model, isolated duplex | 1 | 1 | 1 | 6ZU5_ACCGGUGCCC_'L50'2395_1.PDB | 1 | 1 | 1 | 1 | 1 |
1x1 | ACCGU&AUUGU | CU | AC | GU | ((.(()).)) | 2.7 | -2.4 | -14.81 | -56.4 | -10.6 | 2.7 | 0 | 2.7 | PREDICTED | Turner2004 | null | null | null | 1 M NaCl, pH 7 — nearest-neighbour model, isolated duplex | 4 | 1 | 4 | 8TPU_ACCGUUGUUA_SA2019_1.PDB | 2 | 1 | 1 | 1 | 1 |
1x1 | ACCUC&GAUGU | CU | AC | GU | ((.(()).)) | 1.2 | -3.4 | -22.13 | -75.2 | 21.2 | 1.2 | 0 | 1.2 | PREDICTED | Turner2004 | null | null | null | 1 M NaCl, pH 7 — nearest-neighbour model, isolated duplex | 1 | 1 | 1 | 2GRW_ACCUCUGUAG_A5_12.PDB | 1 | 1 | 1 | 1 | 1 |
1x1 | ACCUG&CAUGU | CU | AC | GU | ((.(()).)) | 1.5 | -3.1 | -20.1 | -69.6 | 15.6 | 1.5 | 0 | 1.5 | PREDICTED | Turner2004 | null | null | null | 1 M NaCl, pH 7 — nearest-neighbour model, isolated duplex | 4 | 1 | 4 | 9VTG_ACCUGUGUAC_'14'803_1.PDB | 1 | 1 | 1 | 1 | 1 |
1x1 | ACCUU&AAUGU | CU | AC | GU | ((.(()).)) | 3.2 | -1.9 | -12.82 | -51.6 | null | 3.2 | 0 | 3.2 | PREDICTED | Turner2004 | null | null | null | 1 M NaCl, pH 7 — nearest-neighbour model, isolated duplex | 10 | 4 | 10 | 3J9W_ACCUUUGUAA_BA2222_1.PDB | 4 | 4 | 4 | 2 | 2 |
1x1 | ACGAA&UUGGU | GG | AC | GU | ((.(()).)) | 0.6 | -4.5 | -20.68 | -68.6 | 28.4 | 0.6 | -0.5 | 1.1 | PREDICTED | Turner2004 | null | null | null | 1 M NaCl, pH 7 — nearest-neighbour model, isolated duplex | 316 | 6 | 289 | 22TU_ACGAAUGGUU_'S2'1381_1.PDB | 37 | 12 | 6 | 3 | 2 |
1x1 | ACGAC&GUUGU | GU | AC | GU | ((.(()).)) | 1.4 | -3.2 | -21.13 | -72.6 | 17.9 | 1.4 | -2.5 | 3.9 | PREDICTED | Turner2004 | null | null | null | 1 M NaCl, pH 7 — nearest-neighbour model, isolated duplex | 1 | 1 | 1 | 9NRI_ACGACUGUUG_BA2213_1.PDB | 1 | 1 | 1 | 1 | 1 |
1x1 | ACGAG&UUGGU | GG | AC | GU | ((.(()).)) | 0.9 | -4.2 | -17.09 | -58 | 21.6 | 0.9 | -0.5 | 1.4 | PREDICTED | Turner2004 | null | null | null | 1 M NaCl, pH 7 — nearest-neighbour model, isolated duplex | 1 | 1 | 1 | 9CAI_ACGAGUGGUU_'B2'1283_1.PDB | 1 | 1 | 1 | 1 | 1 |
1x1 | ACGAU&AUUGU | GU | AC | GU | ((.(()).)) | 3 | -2.1 | -15.44 | -59.4 | -13.2 | 3 | -0.9 | 3.9 | PREDICTED | Turner2004 | null | null | null | 1 M NaCl, pH 7 — nearest-neighbour model, isolated duplex | 1 | 1 | 1 | 7PAT_ACGAUUGUUA_'3'325_1.PDB | 1 | 1 | 1 | 1 | 1 |
1x1 | ACGCA&UGAGU | GA | AC | GU | ((.(()).)) | 0.7 | -4.4 | -21.39 | -71.2 | 27.3 | 0.7 | 0 | 0.7 | PREDICTED | Turner2004 | null | null | null | 1 M NaCl, pH 7 — nearest-neighbour model, isolated duplex | 1 | 1 | 1 | 7SYV_ACGCAUGAGU_z68_1.PDB | 1 | 1 | 1 | 1 | 1 |
1x1 | ACGCA&UGGGU | GG | AC | GU | ((.(()).)) | -1.4 | -6.5 | -29.38 | -90.2 | 52.6 | -1.4 | -1.4 | 0 | PREDICTED | Turner2004 | null | null | null | 1 M NaCl, pH 7 — nearest-neighbour model, isolated duplex | 1 | 1 | 1 | 5XY3_ACGCAUGGGU_'1'16_1.PDB | 1 | 1 | 1 | 1 | 1 |
1x1 | ACGGA&UCGGU | GG | AC | GU | ((.(()).)) | -0.9 | -6 | -31.36 | -98.2 | 46.2 | -0.9 | -1.7 | 0.8 | PREDICTED | Turner2004 | null | null | null | 1 M NaCl, pH 7 — nearest-neighbour model, isolated duplex | 8 | 3 | 8 | 5OPT_ACGGAUGGCU_E1792_1.PDB | 3 | 3 | 3 | 2 | 2 |
1x1 | ACGGC&GCGGU | GG | AC | GU | ((.(()).)) | -2.4 | -7 | -37.5 | -113.2 | 58.1 | -2.4 | -2.4 | 0 | PREDICTED | Turner2004 | null | null | null | 1 M NaCl, pH 7 — nearest-neighbour model, isolated duplex | 1 | 1 | 1 | 7QEP_ACGGCUGGCG_'1'495_1.PDB | 1 | 1 | 1 | 1 | 1 |
1x1 | ACGGC&GCUGU | GU | AC | GU | ((.(()).)) | -0.5 | -5.1 | -29.53 | -93.6 | 42.4 | -0.5 | -4.5 | 4 | PREDICTED | Turner2004 | null | null | null | 1 M NaCl, pH 7 — nearest-neighbour model, isolated duplex | 1 | 1 | 1 | 9AXV_ACGGCUGUCG_'B3'7_1.PDB | 1 | 1 | 1 | 1 | 1 |
1x1 | ACGGG&CCGGU | GG | AC | GU | ((.(()).)) | -2.3 | -6.9 | -35.91 | -108.4 | 58.2 | -2.3 | -4.5 | 2.2 | PREDICTED | Turner2004 | null | null | null | 1 M NaCl, pH 7 — nearest-neighbour model, isolated duplex | 113 | 18 | 109 | 4U3N_ACGGGUGGCC_'2'687_1.PDB | 58 | 32 | 18 | 6 | 5 |
1x1 | ACGUG&CAUGU | GU | AC | GU | ((.(()).)) | 1.5 | -3.1 | -20.1 | -69.6 | 15.6 | 1.5 | -2.5 | 4 | PREDICTED | Turner2004 | null | null | null | 1 M NaCl, pH 7 — nearest-neighbour model, isolated duplex | 2 | 1 | 2 | 4V84_ACGUGUGUAC_AA1231_1.PDB | 2 | 2 | 1 | 1 | 1 |
1x1 | ACUCC&GGUGU | UU | AC | GU | ((.(()).)) | -1 | -5.6 | -31.4 | -98 | 47.2 | -1 | -1 | 0 | PREDICTED | Turner2004 | null | null | null | 1 M NaCl, pH 7 — nearest-neighbour model, isolated duplex | 4 | 3 | 4 | 5V7Q_ACUCCUGUGG_A1596_1.PDB | 4 | 3 | 3 | 2 | 1 |
1x1 | ACUCG&CGUGU | UU | AC | GU | ((.(()).)) | -0.1 | -4.7 | -28.64 | -92 | 38.2 | -0.1 | -0.1 | 0 | PREDICTED | Turner2004 | null | null | null | 1 M NaCl, pH 7 — nearest-neighbour model, isolated duplex | 5 | 2 | 5 | 7JIL_ACUCGUGUGC_'1'824_1.PDB | 2 | 2 | 2 | 2 | 2 |
1x1 | ACUCU&AGUGU | UU | AC | GU | ((.(()).)) | 0.7 | -4.4 | -24.93 | -82.6 | 28.6 | 0.7 | 0 | 0.7 | PREDICTED | Turner2004 | null | null | null | 1 M NaCl, pH 7 — nearest-neighbour model, isolated duplex | 2 | 1 | 2 | 8APN_ACUCUUGUGA_'A7'137_1.PDB | 1 | 1 | 1 | 1 | 1 |
1x1 | ACUGA&UCUGU | UU | AC | GU | ((.(()).)) | 0.9 | -4.2 | -23.36 | -78.2 | 25.6 | 0.9 | 0 | 0.9 | PREDICTED | Turner2004 | null | null | null | 1 M NaCl, pH 7 — nearest-neighbour model, isolated duplex | 1 | 1 | 1 | 5XY3_ACUGAUGUCU_'1'520_1.PDB | 1 | 1 | 1 | 1 | 1 |
1x1 | ACUGA&UUUGU | UU | AC | GU | ((.(()).)) | 2.7 | -2.4 | -18.84 | -69.4 | -1.7 | 2.7 | 0 | 2.7 | PREDICTED | Turner2004 | null | null | null | 1 M NaCl, pH 7 — nearest-neighbour model, isolated duplex | 2 | 2 | 2 | 9LJE_ACUGAUGUUU_B186_1.PDB | 2 | 2 | 2 | 2 | 1 |
1x1 | ACUGU&ACUGU | UU | AC | GU | ((.(()).)) | 1.1 | -4 | -22.36 | -75.6 | 22.6 | 1.1 | 0 | 1.1 | PREDICTED | Turner2004 | null | null | null | 1 M NaCl, pH 7 — nearest-neighbour model, isolated duplex | 1 | 1 | 1 | 7QEP_ACUGUUGUCA_'1'2100_1.PDB | 1 | 1 | 1 | 1 | 1 |
1x1 | ACUUC&GAUGU | UU | AC | GU | ((.(()).)) | 0.8 | -3.8 | -25.44 | -84.6 | 27.6 | 0.8 | 0 | 0.8 | PREDICTED | Turner2004 | null | null | null | 1 M NaCl, pH 7 — nearest-neighbour model, isolated duplex | 1 | 1 | 1 | 8TVZ_ACUUCUGUAG_C263_1.PDB | 1 | 1 | 1 | 1 | 1 |
1x1 | ACUUG&CAUGU | UU | AC | GU | ((.(()).)) | 1.1 | -3.5 | -23.41 | -79 | 23.2 | 1.1 | 0 | 1.1 | PREDICTED | Turner2004 | null | null | null | 1 M NaCl, pH 7 — nearest-neighbour model, isolated duplex | 6 | 1 | 6 | 6O8X_ACUUGUGUAC_A836_1.PDB | 1 | 1 | 1 | 1 | 1 |
1x1 | ACUUU&AAAGU | UA | AC | GU | ((.(()).)) | 3.2 | -1.9 | -12.82 | -51.6 | null | 3.2 | -1 | 4.2 | PREDICTED | Turner2004 | null | null | null | 1 M NaCl, pH 7 — nearest-neighbour model, isolated duplex | 1 | 1 | 1 | 7OOC_ACUUUUGAAA_'5'173_1.PDB | 1 | 1 | 1 | 1 | 1 |
1x1 | AGAAA&UUCCU | AC | AG | CU | ((.(()).)) | 3.3 | -1.8 | -11.91 | -49 | null | 3.3 | -0.5 | 3.8 | PREDICTED | Turner2004 | null | null | null | 1 M NaCl, pH 7 — nearest-neighbour model, isolated duplex | 63 | 2 | 63 | 3J7Y_AGAAAUCCUU_A3140_1.PDB | 6 | 2 | 2 | 2 | 2 |
1x1 | AGAAG&CUCCU | AC | AG | CU | ((.(()).)) | 1.6 | -3 | -19.31 | -67.4 | 13.4 | 1.6 | 0 | 1.6 | PREDICTED | Turner2004 | null | null | null | 1 M NaCl, pH 7 — nearest-neighbour model, isolated duplex | 1 | 1 | 1 | 8TOC_AGAAGUCCUC_R658_1.PDB | 1 | 1 | 1 | 1 | 1 |
1x1 | AGAAG&CUUCU | AU | AG | CU | ((.(()).)) | 1.6 | -3 | -19.31 | -67.4 | 13.4 | 1.6 | -2.9 | 4.5 | PREDICTED | Turner2004 | null | null | null | 1 M NaCl, pH 7 — nearest-neighbour model, isolated duplex | 3 | 3 | 3 | 4V74_AGAAGUCUUC_AA80_1.PDB | 3 | 3 | 3 | 3 | 3 |
1x1 | AGAAU&AUCCU | AC | AG | CU | ((.(()).)) | 3.1 | -2 | -14.53 | -56.8 | -17.3 | 3.1 | 0 | 3.1 | PREDICTED | Turner2004 | null | null | null | 1 M NaCl, pH 7 — nearest-neighbour model, isolated duplex | 1 | 1 | 1 | 8TOC_AGAAUUCCUA_R3401_1.PDB | 1 | 1 | 1 | 1 | 1 |
1x1 | AGACA&UGUCU | AU | AG | CU | ((.(()).)) | 1.4 | -3.7 | -20.44 | -70.4 | 17.2 | 1.4 | -3.7 | 5.1 | PREDICTED | Turner2004 | null | null | null | 1 M NaCl, pH 7 — nearest-neighbour model, isolated duplex | 1 | 1 | 1 | 7D0F_AGACAUCUGU_A139_1.PDB | 1 | 1 | 1 | 1 | 1 |
1x1 | AGACC&GGACU | AA | AG | CU | ((.(()).)) | 0 | -4.6 | -27.05 | -87.2 | 37.1 | 0 | -0.3 | 0.3 | PREDICTED | Turner2004 | null | null | null | 1 M NaCl, pH 7 — nearest-neighbour model, isolated duplex | 46 | 2 | 46 | 3J9W_AGACCUCAGG_BA1260_1.PDB | 10 | 2 | 2 | 2 | 2 |
1x1 | AGACG&CGCCU | AC | AG | CU | ((.(()).)) | 0.6 | -4 | -24.28 | -80.2 | 29.6 | 0.6 | 0 | 0.6 | PREDICTED | Turner2004 | null | null | null | 1 M NaCl, pH 7 — nearest-neighbour model, isolated duplex | 248 | 3 | 247 | 22TU_AGACGUCCGC_'L5'17_1.PDB | 5 | 3 | 3 | 3 | 2 |
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