OmniGenBench

Overview

OmniGenBench is a collection of benchmark suites. This respository includes datasets from OmniGenBench that have been filtered by our criteria to be included in our quality-curated genomic benchmark datasets.

Dataset structure

The repository is organized as follows:

OmniGenBench/
├── README.md
├── lncrna_g_max/
│   ├── lncrna_g_max_train.csv.gz
│   └── lncrna_g_max_test.csv.gz
├── lncrna_m_esculenta/
│   ├── lncrna_m_esculenta_train.csv.gz
│   └── lncrna_m_esculenta_test.csv.gz
├── lncrna_s_bicolor/
│   ├── lncrna_s_bicolor_train.csv.gz
│   └── lncrna_s_bicolor_test.csv.gz
├── lncrna_s_lycopersicum/
│   ├── lncrna_s_lycopersicum_train.csv.gz
│   └── lncrna_s_lycopersicum_test.csv.gz
├── lncrna_t_aestivum/
│   ├── lncrna_t_aestivum_train.csv.gz
│   └── lncrna_t_aestivum_test.csv.gz
├── lncrna_z_mays/
│   ├── lncrna_z_mays_train.csv.gz
│   └── lncrna_z_mays_test.csv.gz
├── poly_a_arabidopsis_thaliana/
│   ├── poly_a_arabidopsis_thaliana_train.csv.gz
│   └── poly_a_arabidopsis_thaliana_test.csv.gz
├── poly_a_chlamydomonas_reinhardtii/
│   ├── poly_a_chlamydomonas_reinhardtii_train.csv.gz
│   └── poly_a_chlamydomonas_reinhardtii_test.csv.gz
├── poly_a_medicago_truncatula/
│   ├── poly_a_medicago_truncatula_train.csv.gz
│   └── poly_a_medicago_truncatula_test.csv.gz
├── poly_a_oryza_sativa_indica_group/
│   ├── poly_a_oryza_sativa_indica_group_train.csv.gz
│   └── poly_a_oryza_sativa_indica_group_test.csv.gz
├── poly_a_oryza_sativa_japonica_group/
│   ├── poly_a_oryza_sativa_japonica_group_train.csv.gz
│   └── poly_a_oryza_sativa_japonica_group_test.csv.gz
├── poly_a_trifolium_pratense/
│   ├── poly_a_trifolium_pratense_train.csv.gz
│   └── poly_a_trifolium_pratense_test.csv.gz
├── pro_seq_m_esculenta/
│   ├── pro_seq_m_esculenta_train.csv.gz
│   └── pro_seq_m_esculenta_test.csv.gz
├── promoter_strength_leaf/
│   ├── promoter_strength_leaf_train.csv.gz
│   └── promoter_strength_leaf_test.csv.gz
├── promoter_strength_protoplast/
│   ├── promoter_strength_protoplast_train.csv.gz
│   └── promoter_strength_protoplast_test.csv.gz
├── splicing_arabidopsis_thaliana_acceptor/
│   ├── splicing_arabidopsis_thaliana_acceptor_train.csv.gz
│   └── splicing_arabidopsis_thaliana_acceptor_test.csv.gz
├── splicing_arabidopsis_thaliana_donor/
│   ├── splicing_arabidopsis_thaliana_donor_train.csv.gz
│   └── splicing_arabidopsis_thaliana_donor_test.csv.gz
├── te_prediction_arabidopsis/
│   ├── te_prediction_arabidopsis_train.csv.gz
│   ├── te_prediction_arabidopsis_val.csv.gz
│   └── te_prediction_arabidopsis_test.csv.gz
├── te_prediction_rice/
│   ├── te_prediction_rice_train.csv.gz
│   ├── te_prediction_rice_val.csv.gz
│   └── te_prediction_rice_test.csv.gz
├── terminator_strength_leaf/
│   ├── terminator_strength_leaf_train.csv.gz
│   └── terminator_strength_leaf_test.csv.gz
└── terminator_strength_protoplast/
    ├── terminator_strength_protoplast_train.csv.gz
    └── terminator_strength_protoplast_test.csv.gz