Dataset Viewer
The dataset viewer is not available for this split.
Cannot load the dataset split (in streaming mode) to extract the first rows.
Error code: StreamingRowsError
Exception: CastError
Message: Couldn't cast
messages: list<item: struct<role: string, content: string>>
child 0, item: struct<role: string, content: string>
child 0, role: string
child 1, content: string
_facts: string
_assoc: string
to
{'messages': List({'role': Value('string'), 'content': Value('string')})}
because column names don't match
Traceback: Traceback (most recent call last):
File "/src/services/worker/src/worker/utils.py", line 147, in get_rows_or_raise
return get_rows(
dataset=dataset,
...<4 lines>...
column_names=column_names,
)
File "/src/libs/libcommon/src/libcommon/utils.py", line 272, in decorator
return func(*args, **kwargs)
File "/src/services/worker/src/worker/utils.py", line 127, in get_rows
rows_plus_one = list(itertools.islice(safe_iter(ds, dataset=dataset), rows_max_number + 1))
File "/src/services/worker/src/worker/utils.py", line 478, in safe_iter
yield from ds.decode(False) if ds.features else ds
File "/usr/local/lib/python3.14/site-packages/datasets/iterable_dataset.py", line 2818, in __iter__
for key, example in ex_iterable:
^^^^^^^^^^^
File "/usr/local/lib/python3.14/site-packages/datasets/iterable_dataset.py", line 2355, in __iter__
for key, pa_table in self._iter_arrow():
~~~~~~~~~~~~~~~~^^
File "/usr/local/lib/python3.14/site-packages/datasets/iterable_dataset.py", line 2380, in _iter_arrow
for key, pa_table in self.ex_iterable._iter_arrow():
~~~~~~~~~~~~~~~~~~~~~~~~~~~~^^
File "/usr/local/lib/python3.14/site-packages/datasets/iterable_dataset.py", line 536, in _iter_arrow
for key, pa_table in iterator:
^^^^^^^^
File "/usr/local/lib/python3.14/site-packages/datasets/iterable_dataset.py", line 419, in _iter_arrow
for key, pa_table in self.generate_tables_fn(**gen_kwags):
~~~~~~~~~~~~~~~~~~~~~~~^^^^^^^^^^^^^
File "/usr/local/lib/python3.14/site-packages/datasets/packaged_modules/json/json.py", line 343, in _generate_tables
self._cast_table(pa_table, json_field_paths=json_field_paths),
~~~~~~~~~~~~~~~~^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "/usr/local/lib/python3.14/site-packages/datasets/packaged_modules/json/json.py", line 132, in _cast_table
pa_table = table_cast(pa_table, self.info.features.arrow_schema)
File "/usr/local/lib/python3.14/site-packages/datasets/table.py", line 2369, in table_cast
return cast_table_to_schema(table, schema)
File "/usr/local/lib/python3.14/site-packages/datasets/table.py", line 2297, in cast_table_to_schema
raise CastError(
...<3 lines>...
)
datasets.table.CastError: Couldn't cast
messages: list<item: struct<role: string, content: string>>
child 0, item: struct<role: string, content: string>
child 0, role: string
child 1, content: string
_facts: string
_assoc: string
to
{'messages': List({'role': Value('string'), 'content': Value('string')})}
because column names don't matchNeed help to make the dataset viewer work? Make sure to review how to configure the dataset viewer, and open a discussion for direct support.
bio-ontology-instruct
Correct-by-construction instruction pairs teaching ontology-conformant biomedical knowledge structuring across three open standards: Biolink Model, GO-CAM, and OBO term grounding.
Every target is generated from real ontology releases and double-validated (official toolkit + independent membership/conformance validator). See the model card for the build table.
Slices
pairs_biolink*.jsonl— statement + grounded CURIEs → Biolink RDF/Turtle graph (11 association types).pairs_gocam.jsonl— grounded activities → GO-CAM YAML (2–4 activities, RO causal edges).pairs_obo.jsonl— mention + real candidates → typed grounding triple (GO/MONDO/HP/ChEBI/CL).pairs_refusal.jsonl— declines to invent terms/predicates.ood_biolink.jsonl— multi-association graphs held out for OOD eval (never trained).
Provenance & licences
Entities are real CURIEs from GO, MONDO, HP, ChEBI, Cell Ontology (all CC-BY / open), gene IDs verified via mygene.info. Biolink Model and GO-CAM schemas are open (BSD-3 / CC-BY). Pairs are released under Apache-2.0; ontology terms remain under their source licences.
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