Datasets:
homo_sapiens dict | saccharomyces_cerevisiae dict | caenorhabditis_elegans dict | drosophila_melanogaster dict | arabidopsis_thaliana dict | escherichia_coli dict |
|---|---|---|---|---|---|
{
"file": "homo_sapiens_22.fa",
"chromosome": "22",
"bp": 20000
} | {
"file": "saccharomyces_cerevisiae_chrI.fa",
"chromosome": "chrI",
"bp": 20000
} | {
"file": "caenorhabditis_elegans_chrI.fa",
"chromosome": "chrI",
"bp": 20000
} | {
"file": "drosophila_melanogaster_2L.fa",
"chromosome": "2L",
"bp": 20000
} | {
"file": "arabidopsis_thaliana_1.fa",
"chromosome": "1",
"bp": 20000
} | {
"file": "escherichia_coli_Chromosome.fa",
"chromosome": "Chromosome",
"bp": 20000
} |
Genomic Sequences — 6 Species (20kb windows, Etapa C replication)
Sequências genômicas reais (NCBI/Ensembl) usadas no pipeline OmniMind Etapa C/D: 20.000 bp ACGT filtrados por espécie, mesmas regiões e janela da Etapa C (nucleotide-transformer-v2-50m-multi-species).
| Species | Chromosome | Source |
|---|---|---|
| Homo sapiens | 22 | NCBI |
| Saccharomyces cerevisiae | chrI | NCBI |
| Caenorhabditis elegans | chrI | NCBI |
| Drosophila melanogaster | 2L | NCBI |
| Arabidopsis thaliana | 1 | NCBI |
| Escherichia coli | Chromosome | NCBI |
Uso: tokenização de janelas de 1000bp (171 tokens) para extração de hidden states
e TDA (persistent homology) — comparação com Hi-C real (ver
fabricioslv/omnimind-hic-multispecies).
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