PLantCADMani
Collection
Datasets for Analyzing Internal Structure of PlantCAD2 + Other Plant DNA LMs • 7 items • Updated
chrom large_stringlengths 3 23 | start int64 0 397M | end int64 8.19k 397M | strand large_stringclasses 1
value | seq large_stringlengths 8.19k 8.19k | assembly large_stringclasses 30
values | layer_0 listlengths 1.54k 1.54k | layer_1 listlengths 1.54k 1.54k | layer_2 listlengths 1.54k 1.54k | layer_3 listlengths 1.54k 1.54k | layer_4 listlengths 1.54k 1.54k | layer_5 listlengths 1.54k 1.54k | layer_6 listlengths 1.54k 1.54k | layer_7 listlengths 1.54k 1.54k | layer_8 listlengths 1.54k 1.54k | layer_9 listlengths 1.54k 1.54k | layer_10 listlengths 1.54k 1.54k | layer_11 listlengths 1.54k 1.54k |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Chr04 | 16,847,000 | 16,855,192 | + | "AACCTTAAAAGGCTCATCATGTGATCACAGCAATTGGGGAAAAAGTATAACAAGTTAAATTATAAACAGATAATTGCAAATGAATATGCAACGCTGGTT(...TRUNCATED) | Aamericanus_586_v1.0 | [3.4660873413085938,3.1624832153320312,2.40708589553833,3.1012215614318848,3.2974131107330322,4.4260(...TRUNCATED) | [3.5106887817382812,2.7247626781463623,2.1193504333496094,2.971031665802002,2.4168243408203125,4.369(...TRUNCATED) | [4.849990367889404,2.5796642303466797,1.7720415592193604,3.206289768218994,2.0465097427368164,4.8121(...TRUNCATED) | [4.375429153442383,2.720911979675293,2.3891119956970215,3.2942230701446533,3.446016311645508,5.47690(...TRUNCATED) | [4.512221336364746,2.5205795764923096,3.562771797180176,2.4547693729400635,2.828929901123047,4.82518(...TRUNCATED) | [4.02004337310791,4.353864669799805,1.277600884437561,3.1374850273132324,3.270357608795166,4.5704889(...TRUNCATED) | [1.1933364868164062,5.141974449157715,0.2823508679866791,1.9746718406677246,4.465374946594238,7.6981(...TRUNCATED) | [1.3573185205459595,5.090712547302246,0.22717070579528809,3.874472141265869,5.853940010070801,7.2588(...TRUNCATED) | [4.327557563781738,5.125127792358398,1.173821210861206,0.9774264693260193,2.843242645263672,9.119049(...TRUNCATED) | [1.573606252670288,7.160114288330078,-1.4878218173980713,-5.195352554321289,2.1446099281311035,11.82(...TRUNCATED) | [2.6803464889526367,8.808879852294922,-4.139077663421631,-5.198665618896484,2.2435450553894043,12.29(...TRUNCATED) | [2.7438015937805176,5.95074987411499,-1.6184611320495605,-5.978288650512695,-2.590146541595459,10.79(...TRUNCATED) |
Chr02 | 32,630,003 | 32,638,195 | + | "TATTAAATGTTATATGGTTTGATAGGAATGGTATGCTAATGTGAATAAATTTTCTGTTCCACAGTCCAAAAGGAGTACTGTTAAGTTGGATATCTATAG(...TRUNCATED) | Aamericanus_586_v1.0 | [3.257768154144287,2.582366704940796,2.996060609817505,3.210294723510742,3.1142349243164062,4.257130(...TRUNCATED) | [3.753857135772705,3.2843170166015625,3.1259233951568604,3.23040771484375,2.467949390411377,4.893280(...TRUNCATED) | [5.791862964630127,3.181161880493164,2.4821927547454834,2.6038918495178223,2.5655040740966797,5.3080(...TRUNCATED) | [5.244148254394531,3.2650146484375,1.6308374404907227,2.9490320682525635,3.661405563354492,6.9715819(...TRUNCATED) | [5.5962347984313965,2.373384714126587,2.4550204277038574,1.5168681144714355,2.511969566345215,7.0076(...TRUNCATED) | [5.421144485473633,2.899890899658203,1.1214656829833984,2.8474321365356445,2.2102608680725098,6.1364(...TRUNCATED) | [4.122054100036621,3.279353618621826,0.6359615325927734,1.9077274799346924,1.7294209003448486,6.1200(...TRUNCATED) | [4.1868391036987305,2.8391871452331543,0.42608267068862915,0.9084842801094055,0.10939943790435791,6.(...TRUNCATED) | [4.356019973754883,2.0918688774108887,0.9919549226760864,-1.0421035289764404,-1.5546212196350098,4.3(...TRUNCATED) | [5.135766983032227,2.8343214988708496,-0.3837680220603943,-2.6801815032958984,-3.8722898960113525,3.(...TRUNCATED) | [4.197609901428223,2.292647123336792,0.7473766803741455,-5.012702941894531,-1.4619519710540771,3.167(...TRUNCATED) | [5.084797382354736,0.8242199420928955,3.9239706993103027,-4.4617919921875,0.8648084402084351,1.43341(...TRUNCATED) |
Chr01 | 20,486,072 | 20,494,264 | + | "TGATGTCGGTTGTTGTATATATATTGGCTCTCACAGGACAGTTGATTGTGTACTCTAGTCTGTAATGATGTCTTTGAATTACAGACTTAGTCATTTGAG(...TRUNCATED) | Aamericanus_586_v1.0 | [3.3462915420532227,3.2392983436584473,2.4853968620300293,3.9216058254241943,3.5025758743286133,5.14(...TRUNCATED) | [4.017217636108398,3.1328444480895996,3.0336365699768066,4.167567729949951,3.2628371715545654,5.1775(...TRUNCATED) | [4.985318183898926,3.4679393768310547,2.8992061614990234,4.152841567993164,3.171280860900879,5.41079(...TRUNCATED) | [5.7555131912231445,3.135781764984131,3.224205493927002,3.5421061515808105,4.085948467254639,5.89608(...TRUNCATED) | [5.709826469421387,2.2844581604003906,3.827486753463745,3.482363224029541,5.133090972900391,5.634521(...TRUNCATED) | [5.461501598358154,3.1967883110046387,2.1136062145233154,2.8999557495117188,4.075301647186279,5.9769(...TRUNCATED) | [4.707285404205322,4.616698741912842,1.4627995491027832,2.1250903606414795,3.6386008262634277,7.9086(...TRUNCATED) | [2.575700283050537,5.4283061027526855,4.149404525756836,2.4462366104125977,2.475371837615967,8.73058(...TRUNCATED) | [4.312956809997559,5.266775131225586,3.941112518310547,1.2227418422698975,0.15520691871643066,7.5097(...TRUNCATED) | [2.820941686630249,4.926682472229004,6.996885776519775,-0.1891535222530365,-1.894532322883606,9.4117(...TRUNCATED) | [-0.25914907455444336,4.642941474914551,7.949683666229248,0.09354925155639648,-0.44628527760505676,1(...TRUNCATED) | [-2.0268678665161133,4.094603538513184,11.27219009399414,-7.456205368041992,-1.3580231666564941,13.5(...TRUNCATED) |
Chr03 | 25,924,001 | 25,932,193 | + | "ACCAATTCATGAGGGTGACCAAGCTTCCTGCAGATCCTTTTATGTTGATTGGGAATATCTGTAACAGAACAAAATTGTTTTATTGTTATGCGTTAATGG(...TRUNCATED) | Aamericanus_586_v1.0 | [3.655704975128174,2.900205135345459,2.982743740081787,3.041274070739746,2.863248825073242,3.9659862(...TRUNCATED) | [4.4292073249816895,2.611337900161743,2.03604793548584,3.3358635902404785,1.6639816761016846,4.82982(...TRUNCATED) | [4.928951740264893,2.024045705795288,1.82816743850708,2.9605681896209717,1.954872488975525,5.4720134(...TRUNCATED) | [4.874330997467041,2.609036922454834,1.6473478078842163,4.277907371520996,2.65364933013916,5.9230117(...TRUNCATED) | [5.383678913116455,1.3032867908477783,1.7775459289550781,3.1963350772857666,2.448652744293213,5.8449(...TRUNCATED) | [6.091512680053711,0.3980553150177002,-0.6121878623962402,3.7084810733795166,2.548734664916992,3.603(...TRUNCATED) | [5.58561372756958,0.4879574179649353,-3.597935199737549,2.9480106830596924,2.26450777053833,3.759848(...TRUNCATED) | [1.6877132654190063,-1.6142771244049072,-7.238494396209717,-0.381477952003479,2.253911018371582,0.69(...TRUNCATED) | [-3.1989095211029053,-8.171884536743164,-5.905435562133789,-3.8312690258026123,-5.962486267089844,-1(...TRUNCATED) | [-2.539914846420288,-9.652042388916016,-11.844785690307617,-5.099102020263672,-7.98422908782959,2.30(...TRUNCATED) | [-10.787866592407227,-8.952825546264648,-14.621084213256836,0.5796327590942383,-6.244668960571289,1.(...TRUNCATED) | [-9.007451057434082,-6.899899482727051,-3.6850829124450684,5.574997901916504,-7.850271701812744,3.06(...TRUNCATED) |
Chr07 | 464,331 | 472,523 | + | "TTAACATAACCAACAAGGCAACAAACAGATATAGCCAATTCAACATGAAAAAATAAAATTATATAATATTCGCCTAATCTTTATCTTAACAAACACATA(...TRUNCATED) | Aamericanus_586_v1.0 | [3.34161639213562,2.988982677459717,3.076265811920166,3.35479736328125,2.6893534660339355,4.69323873(...TRUNCATED) | [3.887205123901367,3.5683059692382812,2.831463098526001,2.6315205097198486,2.9079761505126953,4.6290(...TRUNCATED) | [5.393285274505615,3.7571139335632324,2.5422797203063965,1.9838924407958984,2.8270277976989746,4.828(...TRUNCATED) | [5.393387794494629,3.1004395484924316,2.4337661266326904,2.3510265350341797,3.8929080963134766,5.316(...TRUNCATED) | [5.158940315246582,2.8856072425842285,2.5070276260375977,0.9673665761947632,3.013009548187256,5.4443(...TRUNCATED) | [5.752042293548584,3.800659656524658,0.8158419728279114,2.2646141052246094,3.070634603500366,5.44299(...TRUNCATED) | [5.117205619812012,3.09869384765625,1.1522510051727295,2.0823817253112793,2.5882720947265625,5.31046(...TRUNCATED) | [3.3675830364227295,2.0753729343414307,0.5222927927970886,1.0329631567001343,1.3841826915740967,7.58(...TRUNCATED) | [4.122028350830078,0.30330878496170044,1.698350191116333,-0.6895623803138733,-0.09014397859573364,6.(...TRUNCATED) | [6.171210289001465,3.2745633125305176,0.08857762813568115,-3.5195207595825195,-0.9717101454734802,6.(...TRUNCATED) | [5.726129055023193,6.816274166107178,1.3574917316436768,-5.669103622436523,0.2305283546447754,5.7756(...TRUNCATED) | [2.2281064987182617,3.4887752532958984,3.3416337966918945,-4.056623458862305,-0.38151824474334717,3.(...TRUNCATED) |
Chr05 | 12,808,216 | 12,816,408 | + | "GCATTCTTGGAGAAGTTGATATGAAGACCTAACAGTAATCCAAAACGGTTGAGGATGAAGCGGTAGCCCACCATCGTCGAGACCTCGGTGCACCAAAGA(...TRUNCATED) | Aamericanus_586_v1.0 | [3.395371198654175,3.406904697418213,3.0016744136810303,4.063775062561035,3.084097385406494,4.657333(...TRUNCATED) | [3.409954786300659,3.9029531478881836,3.380689859390259,4.408463001251221,2.7833845615386963,4.84960(...TRUNCATED) | [4.899467945098877,3.8191723823547363,3.177335262298584,3.6674723625183105,2.9883556365966797,5.7877(...TRUNCATED) | [5.226154327392578,3.753960609436035,3.4075894355773926,3.908402442932129,4.181005477905273,6.481755(...TRUNCATED) | [4.814394950866699,3.944512128829956,4.0598368644714355,1.69062340259552,4.223832130432129,5.7045516(...TRUNCATED) | [5.030606746673584,4.187436103820801,2.2342169284820557,2.9364006519317627,3.6912810802459717,5.9632(...TRUNCATED) | [4.326333522796631,6.106626987457275,1.9957276582717896,1.5648255348205566,4.0975165367126465,7.0170(...TRUNCATED) | [4.409297943115234,6.407356262207031,2.461120367050171,1.502897024154663,2.3948287963867188,7.263023(...TRUNCATED) | [3.207348346710205,5.674903869628906,2.9597201347351074,0.5958012342453003,1.377229928970337,6.00448(...TRUNCATED) | [2.8403358459472656,5.869501113891602,1.6165170669555664,0.4215526878833771,0.1041821837425232,3.964(...TRUNCATED) | [2.7202277183532715,6.207467555999756,2.4736719131469727,-2.1925392150878906,0.7555133104324341,3.50(...TRUNCATED) | [1.6653361320495605,3.0277817249298096,1.584837555885315,-3.3517541885375977,3.8711605072021484,2.15(...TRUNCATED) |
Chr02 | 325,003 | 333,195 | + | "CATCTCTTTAAAAAAGAGTTCAGCATAAAAACAAATGCAGTTGCTTGATTCAACGAACCCCGTGCTATACAGCTTGTAATATATATTTTTTCTCTGAGG(...TRUNCATED) | Aamericanus_586_v1.0 | [3.4735240936279297,2.974184513092041,3.214592695236206,3.3940975666046143,2.889639377593994,3.82996(...TRUNCATED) | [3.79732608795166,3.0716471672058105,3.3025710582733154,3.5076303482055664,2.827221393585205,3.95597(...TRUNCATED) | [5.1948442459106445,2.75058913230896,3.269796848297119,3.578396797180176,2.4282643795013428,4.845256(...TRUNCATED) | [5.583132743835449,2.6250743865966797,2.9004359245300293,3.7138705253601074,3.643343925476074,5.2310(...TRUNCATED) | [5.433990001678467,3.0675086975097656,3.5705251693725586,2.1701793670654297,2.9036831855773926,5.541(...TRUNCATED) | [5.351781845092773,4.244740009307861,2.0461819171905518,3.78471040725708,2.5787405967712402,4.584149(...TRUNCATED) | [3.4614858627319336,4.286197662353516,1.3846089839935303,3.177635431289673,2.6428184509277344,4.5465(...TRUNCATED) | [1.2845938205718994,3.387108087539673,1.5131762027740479,3.2404701709747314,1.3602845668792725,4.465(...TRUNCATED) | [1.6408941745758057,3.7419943809509277,3.6049749851226807,1.7822532653808594,0.5524061918258667,3.96(...TRUNCATED) | [1.197928547859192,4.212460517883301,2.77455472946167,0.9860515594482422,-1.6295058727264404,3.74119(...TRUNCATED) | [-1.814571499824524,6.281655311584473,4.434725761413574,1.2298280000686646,-1.3896582126617432,3.602(...TRUNCATED) | [-2.7916345596313477,3.0566558837890625,4.4945244789123535,-0.43050718307495117,0.22555026412010193,(...TRUNCATED) |
Chr12 | 21,591,870 | 21,600,062 | + | "ATACTTTGAAAAAATAAACCAATAAATAAAAGATGATCGAGTAGTTTTGGGTTCTTTATTAAGGTTCATATTCCCCATTAACACCTTTTCTTTTGTTAA(...TRUNCATED) | Aamericanus_586_v1.0 | [3.4398984909057617,2.9128832817077637,3.237333297729492,3.2464916706085205,3.033512592315674,4.4572(...TRUNCATED) | [3.441481590270996,3.2952535152435303,3.2498626708984375,3.04142689704895,2.894354820251465,4.631650(...TRUNCATED) | [5.139326572418213,3.640120506286621,2.3011088371276855,1.9867361783981323,3.261791944503784,5.54853(...TRUNCATED) | [4.560368061065674,4.031305313110352,2.4632837772369385,2.6620547771453857,4.40272331237793,6.505139(...TRUNCATED) | [5.383707046508789,3.354104518890381,3.6659836769104004,0.8013326525688171,3.711555004119873,5.80496(...TRUNCATED) | [4.817320823669434,3.9291374683380127,1.702653408050537,1.5288348197937012,3.4159679412841797,6.0473(...TRUNCATED) | [3.346500873565674,4.350483417510986,1.23190438747406,1.06203293800354,3.5321288108825684,6.15750455(...TRUNCATED) | [0.9936805367469788,6.215503692626953,-0.427487850189209,-0.6407877206802368,2.415775775909424,8.081(...TRUNCATED) | [0.8501684665679932,8.110115051269531,-0.6279205083847046,-2.313225030899048,-0.3581811785697937,7.6(...TRUNCATED) | [5.394540309906006,5.0673322677612305,-5.699150085449219,-2.7624573707580566,-2.560502290725708,7.19(...TRUNCATED) | [1.4459220170974731,6.652322769165039,-3.3427858352661133,-3.7648251056671143,-3.5505175590515137,5.(...TRUNCATED) | [-1.5689187049865723,5.471898078918457,5.767877578735352,-1.7507033348083496,1.4583361148834229,7.57(...TRUNCATED) |
Chr08 | 10,305,603 | 10,313,795 | + | "CCAAGCCAAGGTGGGATTTGGTCACCTGGGCTGTAGGCCCATGCCCTGTGTGTGGGTTGAGTATGTTTCAATGGACTTTGTCCACTTTATTGTAATCGT(...TRUNCATED) | Aamericanus_586_v1.0 | [3.5997252464294434,2.8054115772247314,3.2438528537750244,3.326291084289551,3.1399154663085938,4.498(...TRUNCATED) | [3.4259531497955322,3.5089805126190186,2.8228039741516113,3.4258265495300293,2.7023212909698486,4.79(...TRUNCATED) | [5.0561933517456055,3.378521680831909,2.4580817222595215,2.9282102584838867,2.7718074321746826,5.290(...TRUNCATED) | [5.014995098114014,3.2465972900390625,1.7215625047683716,2.895944595336914,3.936518669128418,6.08331(...TRUNCATED) | [5.702266693115234,2.5671939849853516,2.208237409591675,1.9742478132247925,3.069489002227783,5.63800(...TRUNCATED) | [5.7586517333984375,3.4787180423736572,0.7234637141227722,2.925647497177124,2.893462657928467,4.9820(...TRUNCATED) | [4.693594932556152,4.440918922424316,0.8633584976196289,2.2454655170440674,3.174189329147339,5.42085(...TRUNCATED) | [5.263631820678711,3.7304539680480957,0.7302024364471436,1.172936201095581,1.3906166553497314,6.1805(...TRUNCATED) | [4.384806156158447,2.669227361679077,1.5517916679382324,-0.8136496543884277,0.6716331243515015,5.167(...TRUNCATED) | [4.819852828979492,3.870408535003662,-0.5388365983963013,-3.097551107406616,-1.7025972604751587,4.48(...TRUNCATED) | [1.783022403717041,6.333081245422363,0.2636990547180176,-5.376038551330566,0.7282896637916565,5.4029(...TRUNCATED) | [1.1260902881622314,6.619421005249023,1.6224660873413086,-5.612295627593994,2.1481847763061523,5.399(...TRUNCATED) |
Chr12 | 19,817,412 | 19,825,604 | + | "AGCTTTTTCAAAATGTAGTGCTATCTCAGTTATTGAGACGTATTATACGATACGATCGGTTCGATACATTAGGATTCTTTGTTGCTTCTCCCAATCTGA(...TRUNCATED) | Aamericanus_586_v1.0 | [2.663980484008789,2.9983267784118652,3.3384571075439453,3.775998830795288,3.4195399284362793,4.3081(...TRUNCATED) | [3.379514694213867,2.827984571456909,3.0745205879211426,3.330354690551758,2.4290771484375,4.64798831(...TRUNCATED) | [4.496942520141602,2.453660488128662,2.494194984436035,2.7240467071533203,3.1998631954193115,4.64525(...TRUNCATED) | [4.8393683433532715,2.7394561767578125,2.4865827560424805,3.2517600059509277,4.061459541320801,4.447(...TRUNCATED) | [4.331329345703125,1.9084067344665527,2.83322811126709,2.721377372741699,3.3690834045410156,5.042825(...TRUNCATED) | [4.583713531494141,2.623438835144043,0.9834923148155212,3.3044962882995605,2.7529640197753906,3.5002(...TRUNCATED) | [2.762695789337158,2.7798702716827393,-0.5162312984466553,3.274451494216919,2.763657331466675,3.9864(...TRUNCATED) | [1.8263211250305176,2.6375629901885986,-0.8122305870056152,2.713069438934326,1.1587207317352295,3.21(...TRUNCATED) | [2.2720088958740234,1.821047306060791,-0.2556228041648865,2.0980303287506104,0.45851102471351624,2.1(...TRUNCATED) | [3.216926097869873,4.992325782775879,-2.0363807678222656,-0.17045855522155762,0.4769279360771179,-0.(...TRUNCATED) | [2.4760899543762207,5.235097885131836,-2.6979594230651855,-2.00184965133667,1.748929500579834,-0.107(...TRUNCATED) | [0.8848283290863037,0.1135646402835846,-2.1323294639587402,0.8394150137901306,2.5094823837280273,-2.(...TRUNCATED) |