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The dataset generation failed
Error code: DatasetGenerationError
Exception: TypeError
Message: int() argument must be a string, a bytes-like object or a real number, not 'NoneType'
Traceback: Traceback (most recent call last):
File "/usr/local/lib/python3.14/site-packages/datasets/builder.py", line 1531, in _prepare_split_single
for key, record in generator:
^^^^^^^^^
File "/src/services/worker/src/worker/job_runners/config/parquet_and_info.py", line 613, in wrapped
for item in generator(*args, **kwargs):
~~~~~~~~~^^^^^^^^^^^^^^^^^
File "/usr/local/lib/python3.14/site-packages/datasets/packaged_modules/webdataset/webdataset.py", line 127, in _generate_examples
for example_idx, example in enumerate(self._get_pipeline_from_tar(tar_path, tar_iterator)):
~~~~~~~~~^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "/usr/local/lib/python3.14/site-packages/datasets/packaged_modules/webdataset/webdataset.py", line 32, in _get_pipeline_from_tar
for filename, f in tar_iterator:
^^^^^^^^^^^^
File "/usr/local/lib/python3.14/site-packages/datasets/utils/track.py", line 49, in __iter__
for x in self.generator(*self.args):
~~~~~~~~~~~~~~^^^^^^^^^^^^
File "/usr/local/lib/python3.14/site-packages/datasets/utils/file_utils.py", line 1400, in _iter_from_urlpath
with xopen(urlpath, "rb", download_config=download_config, block_size=0) as f:
~~~~~^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "/usr/local/lib/python3.14/site-packages/datasets/utils/file_utils.py", line 977, in xopen
file_obj = fs.open(paths[0], mode)
File "<string>", line 3, in open
File "/usr/local/lib/python3.14/unittest/mock.py", line 1176, in __call__
return self._mock_call(*args, **kwargs)
~~~~~~~~~~~~~~~^^^^^^^^^^^^^^^^^
File "/usr/local/lib/python3.14/unittest/mock.py", line 1180, in _mock_call
return self._execute_mock_call(*args, **kwargs)
~~~~~~~~~~~~~~~~~~~~~~~^^^^^^^^^^^^^^^^^
File "/usr/local/lib/python3.14/unittest/mock.py", line 1247, in _execute_mock_call
result = effect(*args, **kwargs)
File "/src/services/worker/src/worker/job_runners/config/parquet_and_info.py", line 786, in wrapped
tracker.files[urlpath] = {"read": 0, "size": int(f.size)}
~~~^^^^^^^^
TypeError: int() argument must be a string, a bytes-like object or a real number, not 'NoneType'
The above exception was the direct cause of the following exception:
Traceback (most recent call last):
File "/src/services/worker/src/worker/job_runners/config/parquet_and_info.py", line 1369, in compute_config_parquet_and_info_response
parquet_operations, partial, estimated_dataset_info = stream_convert_to_parquet(
~~~~~~~~~~~~~~~~~~~~~~~~~^
builder, max_dataset_size_bytes=max_dataset_size_bytes
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
)
^
File "/src/services/worker/src/worker/job_runners/config/parquet_and_info.py", line 948, in stream_convert_to_parquet
builder._prepare_split(split_generator=splits_generators[split], file_format="parquet")
~~~~~~~~~~~~~~~~~~~~~~^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "/usr/local/lib/python3.14/site-packages/datasets/builder.py", line 1393, in _prepare_split
for job_id, done, content in self._prepare_split_single(
~~~~~~~~~~~~~~~~~~~~~~~~~~^
gen_kwargs=gen_kwargs, job_id=job_id, **_prepare_split_args
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
):
^
File "/usr/local/lib/python3.14/site-packages/datasets/builder.py", line 1571, in _prepare_split_single
raise DatasetGenerationError("An error occurred while generating the dataset") from e
datasets.exceptions.DatasetGenerationError: An error occurred while generating the datasetNeed help to make the dataset viewer work? Make sure to review how to configure the dataset viewer, and open a discussion for direct support.
pkl unknown | __key__ string | __url__ string |
|---|---|---|
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... | mols/T9E | hf://datasets/Yuxuan-Li/CheMoDesign-data@2a8de0bf4f762a67012d307756b0141d5357e410/mols.tar |
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... | mols/L7A | hf://datasets/Yuxuan-Li/CheMoDesign-data@2a8de0bf4f762a67012d307756b0141d5357e410/mols.tar |
[
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... | mols/9BZ | hf://datasets/Yuxuan-Li/CheMoDesign-data@2a8de0bf4f762a67012d307756b0141d5357e410/mols.tar |
[
128,
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237,
0,
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239,
190,
173,
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0,... | mols/5EX | hf://datasets/Yuxuan-Li/CheMoDesign-data@2a8de0bf4f762a67012d307756b0141d5357e410/mols.tar |
[
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0,
0,
239,
190,
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0,
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... | mols/8U3 | hf://datasets/Yuxuan-Li/CheMoDesign-data@2a8de0bf4f762a67012d307756b0141d5357e410/mols.tar |
[
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... | mols/4R1 | hf://datasets/Yuxuan-Li/CheMoDesign-data@2a8de0bf4f762a67012d307756b0141d5357e410/mols.tar |
"gASV71sAAAAAAACMEXJka2l0LkNoZW0ucmRjaGVtlIwDTW9slJOUQsNbAADvvq3eAAAAABAAAAACAAAAAAAAABQAAAATAAAAgAE(...TRUNCATED) | mols/WGN | hf://datasets/Yuxuan-Li/CheMoDesign-data@2a8de0bf4f762a67012d307756b0141d5357e410/mols.tar |
"gASV5RwAAAAAAACMEXJka2l0LkNoZW0ucmRjaGVtlIwDTW9slJOUQrkcAADvvq3eAAAAABAAAAACAAAAAAAAAAYAAAAFAAAAgAE(...TRUNCATED) | mols/CNH | hf://datasets/Yuxuan-Li/CheMoDesign-data@2a8de0bf4f762a67012d307756b0141d5357e410/mols.tar |
"gASVW78AAAAAAACMEXJka2l0LkNoZW0ucmRjaGVtlIwDTW9slJOUQi+/AADvvq3eAAAAABAAAAACAAAAAAAAACEAAAAmAAAAgAE(...TRUNCATED) | mols/OIJ | hf://datasets/Yuxuan-Li/CheMoDesign-data@2a8de0bf4f762a67012d307756b0141d5357e410/mols.tar |
"gASV7TwAAAAAAACMEXJka2l0LkNoZW0ucmRjaGVtlIwDTW9slJOUQsE8AADvvq3eAAAAABAAAAACAAAAAAAAAA8AAAAPAAAAgAE(...TRUNCATED) | mols/S3B | hf://datasets/Yuxuan-Li/CheMoDesign-data@2a8de0bf4f762a67012d307756b0141d5357e410/mols.tar |
End of preview.
CheMoDesign data pack
Files a CheMoDesign checkout needs besides the source repository.
boltz2_conf.ckptandmols.tarare the Boltz-2 confidence weights and the Boltz chemical-component library. Both are redistributed under the MIT license. Copyright (c) 2024 Jeremy Wohlwend, Gabriele Corso, Saro Passaro. SeeLICENSE.boltz.custom_ligands/holds the noncanonical components used by the manuscript examples: BPUAA, FSYH, GUANG, K3ME, KACU, NITRO, PTYU, SULF, TET2, and TYS.SULFhere is the designed sulfonamide, not the standard CCD sulfate.
The Boltz-2 affinity checkpoint is not included. CheMoDesign does not call it.
Download this pack with:
python -m dream_boltz2.cli.setup_data
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