source_id stringlengths 36 36 | source_revision stringclasses 1
value | task stringlengths 9 22 | validator_type stringlengths 9 31 | validator_params_json stringlengths 54 3.83k | ideal stringlengths 1 183 | answer stringlengths 1 182 | expected bool 2
classes |
|---|---|---|---|---|---|---|---|
af700347-7a6f-4751-bc8a-ee33054e1eea | ca26452b436b7fc2a626333b0c157c876a27b1cd | amplicon_gc | amplicon_gc | {"template": "ATGATATAACAAGCCCTGAATCGTTCAAGAAAGCACAGTATTGGGTTAAGGAACTGCAAAAGCATGGAAGCCCAGATATTGTTATGGCTCTGGTTGGTAACAAAGCTGATCTACATGAAAAAAGAGAAGTACCTACTGAGGATGGAATGGAGCTTGCAGAGAAGAACGGCATGTTCTTCATTGAGACGTCAGCCAAGACAGCCGATAACATAAATCAACTGTTTGAGGAAATTGGCAAGAGGCTACCTCGTCCTGCTCCTTCGTCAAAGGGTGGGCGCGCCGACCCAGCTTTCTTGTACAAAGTGG... | ATCGTTCAAGAAAGCACAGT,TTGACGAAGGAGCAGGACGA | TGATATAACAAGCCCTGAAT,GAGGTAGCCTCTTGCCAATT | true |
94a46bb0-ce9d-4348-acfd-204197c0b7c3 | ca26452b436b7fc2a626333b0c157c876a27b1cd | amplicon_gc | amplicon_gc | {"template": "TCCCTTCCTTTCTCGCCACGTTCGCCGGCTTTCCCCGTCAAGCTCTAAATCGGGGGCTCCCTTTAGGGTTCCGATTTAGTGCTTTACGGCACCTCGACCCCAAAAAACTTGATTTGGGTGATGGTTCACGTAGTGGGCCATCGCCCTGATAGACGGTTTTTCGCCCTTTGACGTTGGAGTCCACGTTCTTTAATAGTGGACTCTTGTTCCAAACTGGAACAACACTCAACTCTATCTCGGGCTATTCTTTTGATTTATAAGGGATTTTGCCGATTTCGGTCTATTGGTTAAAAAATGAGCTGATTT... | GGCTCCCTTTAGGGTTCCGA,AAAGAATAGCCCGAGATAGA | AAACTTGATTTGGGTGATGG,CTCATTTTTTTAACCAATAG | false |
31873eaf-f933-4e3b-bebe-2f246bdafd7c | ca26452b436b7fc2a626333b0c157c876a27b1cd | cds_oligo | cds_oligo | {"max_mismatches": 2, "region_end": 1994, "region_start": 1420, "sequence": "AGCAAGAGAAGGTAGAAGAAGCCAATGAAGGAGAGAACACCCGCTTGTTACACCCTGTGAGCCTGCATGGGATGGATGACCCGGAGAGAGAAGTATTAGAGTGGAGGTTTGACAGCCGCCTAGCATTTCATCACATGGCCCGAGAGCTGCATCCGGACTGTACTGGGTCTCTCTGGTTAGACCAGATCTGAGCCTGGGAGCTCTCTGGCTAACTAGGGAACCCACTGCTTAAGCCTCAATAAA... | CAATTAATCATCGGCATAGT | ATGGCCAAGTTGACCAGTGC | true |
d1dc7121-7634-4fdf-9af9-2de073a94c40 | ca26452b436b7fc2a626333b0c157c876a27b1cd | cds_oligo | cds_oligo | {"max_mismatches": 2, "region_end": 1391, "region_start": 955, "sequence": "ACGAGGGAGCTTCCAGGGGGAAACGCCTGGTATCTTTATAGTCCTGTCGGGTTTCGCCACCTCTGACTTGAGCGTCGATTTTTGTGATGCTCGTCAGGGGGGCGGAGCCTATGGAAAAACGCCAGCAACGCGGCCTTTTTACGGTTCCTGGCCTTTTGCTGGCCTTTTGCTCACATGTTCTTTCCTGCGTTATCCCCTGATTCTGTGGATAACCGTATTACCGCCTTTGAGTGAGCTGATACCG... | AACGGTAATTCTTCTGTCAT | GCTCACATGTTCTTTCCTGC | false |
85093110-a033-417c-81c9-20ab4f97dbb8 | ca26452b436b7fc2a626333b0c157c876a27b1cd | cds_primers | primer_pair_amplicon_length | {"binding_rule": "exact_full_length", "forward_primer": "CTGTGGAATGTGTGTCAGTT", "reverse_primer": "GGCCTCCAAAAAAGCCTCCT", "template": "CCAATACCGGCTGCCCCCCATGGGCAAGGCCTTCCAGGAGCTGGCGGGTAAGGAGCTGTGCGCCATGTCGGAGGAGCAGTTCCGCCAGCGCTCGCCCCTGGGTGGGGATGTGCTGCACGCCCACCTGGACATCTGGAAGTCAGCGGCCTGGATGAAAGAGCGGACTTCACCTGGGGCGATTCACT... | 325 | 325 | true |
8fc694f5-dc17-4dab-8e53-c5f1deacbc8f | ca26452b436b7fc2a626333b0c157c876a27b1cd | cds_primers | primer_pair_amplicon_length | {"binding_rule": "exact_full_length", "forward_primer": "CAACTGAGCAAAGACACCTA", "reverse_primer": "TCCCCGGGCGAGGGGGCCCA", "template": "TCGAAGAGAACCCGATCAACGCATCCGGAGTTGACGCCAAAGCAATCCTGAGCGCTAGGCTGTCCAAATCCCGGCGGCTCGAAAACCTCATCGCACAGCTCCCTGGGGAGAAGAAGAACGGCCTGTTTGGTAATCTTATCGCCCTGTCACTCGGGCTGACCCCCAACTTTAAATCTAACTTCGAC... | 582 | 586 | false |
585411a3-4839-48d7-93b6-a175dc374d28 | ca26452b436b7fc2a626333b0c157c876a27b1cd | codon_optimization | codon_optimization | {"min_score": 0.4, "organism": "mammalian", "protein": "LSGNYRLESNPVRHDLSPLAAATGNRISRARYVGGATEFLKWWPNYG"} | CTGAGCGGCAACTACAGGCTGGAGAGCAACCCCGTGAGGCACGACCTGAGCCCCCTGGCCGCCGCCACCGGCAACAGGATCAGCAGGGCCAGGTACGTGGGCGGCGCCACCGAGTTCCTGAAGTGGTGGCCCAACTACGGC | CTGAGCGGCAACTACAGACTGGAGAGCAACCCCGTGAGACACGACCTGAGCCCCCTGGCCGCCGCCACCGGCAACAGAATCAGCAGAGCCAGATACGTGGGCGGCGCCACCGAGTTCCTGAAGTGGTGGCCCAACTACGGC | true |
b560b127-2431-4cd6-a628-c01e83207866 | ca26452b436b7fc2a626333b0c157c876a27b1cd | codon_optimization | codon_optimization | {"min_score": 0.4, "organism": "e_coli", "protein": "LLFRPCRLPDTCPPFSLREAWRFLIAHAVGISVRCRSFAPSWAVCTNPPFSPTAAPYPVTI"} | CTGCTGTTCCGTCCGTGCCGTCTGCCGGACACCTGCCCGCCGTTCAGCCTGCGTGAAGCGTGGCGTTTCCTGATTGCGCACGCGGTGGGTATTAGCGTGCGTTGCCGTAGCTTCGCGCCGAGCTGGGCGGTGTGCACCAACCCGCCGTTCAGCCCGACCGCGGCGCCGTACCCGGTGACCATT | CTGCTGTTTCGTCCGTGCCGTCTGCCGGATACCTGCCCGCCGTTTAGCCTGCGTGAAGCGTGGCGTTTTCTGATTGCGCACGCGGTGGGCATTAGCGTGCGTTGCCGTAGCTTTGCGCCGAGCTGGGCGGTGTGCACCAACCGCCGTTTAGCCCGACCGCGGCGCCGTATCCGGTGACCATT | false |
13af76d7-8526-46f1-9052-821d7b4085c6 | ca26452b436b7fc2a626333b0c157c876a27b1cd | enzyme_kinetics | enzyme_kinetics | {"asked_param": null, "concentrations": null, "enzyme_conc": 3.574208066995031, "kcat": null, "km": null, "mode": "kcat_from_vmax", "velocities": null, "vmax": 155.82541069794266} | 43.5972 | 43.5972 | true |
114c0d77-9e2b-4636-9ae6-6039566ce656 | ca26452b436b7fc2a626333b0c157c876a27b1cd | gc_content | seq_gc_pct | {"rounding": "nearest_integer", "sequence": "GCAAGAACTCTTCCTCACGCGCGTCGGGCTCGACATCGGCAAGGTGTGGGTCGCGGACGACGGCGCCGCCGTGGCGGTCTGGACCACGCCGGAGAGCGTCGAAGCGGGGGCGGTGTTCGCCGAGATCGGCCCGCGCATGGCCGAGTTGAGCGGTTCCCGGCTGGCCGCGCAGCAACAGATGGAAGGCCTCCTGGCGCCGCACCGGCCCAAGGAGCCCGCGTGGTTCCTGGCCACCGTCGGCGTCTCGCCCGACCACCAGGGCAAGGGTCTGGGCA... | 56 | 56 | true |
3f460b22-26a0-4fbe-90dd-a9a4de6ff6cc | ca26452b436b7fc2a626333b0c157c876a27b1cd | gc_content | seq_gc_pct | {"rounding": "nearest_integer", "sequence": "TCCATAGAAGACACCGGGACCGATCCAGCCTCCGGACTCTAGAGGATCCGGTACTAGAGGAACTGAAAAACCAGAAAGTTAACTGGTAAGTTTAGTCTTTTTGTCTTTTATTTCAGGTCCCGGATCCGGTGGTGGTGCAAATCAAAGAACTGCTCCTCAGTGGATGTTGCCTTTACTTCTAGGCCTGTACGGAAGTGTTACTTCTGCTCTAAAAGCTGCGGAATTGTACCCGCGGGCCCACCATGGTGAGCAAGGGCGAGGAGCTGTTCACCGGG... | 55 | 54 | false |
4705f88e-47d4-4c7b-9524-4afe34ba7492 | ca26452b436b7fc2a626333b0c157c876a27b1cd | gibson_primers | gibson_primer_design | {"binding_len": 20, "insert_sequence": "ATGAGCACTATCGAAGAACGCGTTAAGAAAATTATCGGCGAACAGCTGGGCGTTAAGCAGGAAGAAGTTACCAACAATGCTTCTTTCGTTGAAGACCTGGGCGCGACTTCTCTTGGGACCGTTGAGCTGGTAATGGCTCTGGAAGAAGAGTTTGATACTGAGATTCCGGACGAAGAAGCTGAGAAAATCACCACCGTTCAGGCTGCCATTGATTACATCAACGGCCACCAGGCGCCTGCAGGTATAGGCGCGCCAGGATCCTGA", "left_flank":... | CGTGCCTGAGAGCGCAGTCGATGAGCACTATCGAAGAACG, CCTTGCTAGCAGCTTGAATTTCAGGATCCTGGCGCGCCTA | CGTGCCTGAGAGCGCAGTCGATGAGCACTATCGAAGAACG,CCTTGCTAGCAGCTTGAATTTCAGGATCCTGGCGCGCCTA | true |
0e1d063e-3c09-4cfa-8a08-a00f64ceaa2d | ca26452b436b7fc2a626333b0c157c876a27b1cd | gibson_primers | gibson_primer_design | {"binding_len": 20, "insert_sequence": "ATGTTGCCTTTACTTCTAGGCCTGTACGGAAGTGTTACTTCTGCTCTAAAAGCTGCGGAATTGTACCCGCGGGCCCACCATGGTGAGCAAGGGCGAGGAGCTGTTCACCGGGGTGGTGCCCATCCTGGTCGAGCTGGACGGCGACGTAAACGGCCACAAGTTCAGCGTGTCCGGCGAGGGCGAGGGCGATGCCACCTACGGCAAGCTGACCCTGAAGTTCATCTGCACCACCGGCAAGCTGCCCGTGCCCTGGCCCACCCTCGTGACCACCTTGACCTAC... | GGCGGAGGTTCCCGAATTCGATGTTGCCTTTACTTCTAGG, TCATATCAGATCTCCGTCGATCAGATCTCCGTCGACGAAT | TGGCGGAGGTTCCCGAATTCATGTTGCCTTTACTTCTAGG,TCATATCAGATCTCCGTCGATCAGATCTCCGTCGACGAAT | false |
bf5bab06-e2a6-4c8b-8656-acf3a208118d | ca26452b436b7fc2a626333b0c157c876a27b1cd | molecular_weight | molecular_weight | {"sequence": "PKDYKTMAALAKAIEKN", "sequence_type": "protein"} | 1584.77 | 1584.773 | true |
41c75451-36d4-46e7-b241-bf8fe65c93ff | ca26452b436b7fc2a626333b0c157c876a27b1cd | molecular_weight | molecular_weight | {"sequence": "GGGCUUGUCUGCUC", "sequence_type": "rna"} | 4477.62 | 3477.62 | false |
2c34bd3e-7128-40b9-83b6-cd57f40cd1e8 | ca26452b436b7fc2a626333b0c157c876a27b1cd | msa_scoring | msa_scoring | {"alignment": ["GTGGTTTTTTTGTTTGCAAGCAGCAGATTACGCGCAGAAAAAAAGGATCTCAAGAAGATC", "GAGATTTTTCTGTTTGCAAGCTGCAGATTACGCGCAGA-ACAAATGATCTTACGAAGATC", "GT-GATTTTTTGTTTACAAGCAGCAGAGTACGCGGGGAAAAAAAGGATCTCAAGAAGATC", "G-GGTT-TTTT-TTTGCTAGTAGCAGATTACGTTCAGAAAATAAGGACCTCAAGAAGATC", "GTGGTGTTTTTGTTTGCAAGCATCAGATTACGCGCAGAAAAAAAGGAT... | 0.0000 | 0 | true |
4c045c23-f692-4584-bb52-d8f206752d51 | ca26452b436b7fc2a626333b0c157c876a27b1cd | msa_scoring | msa_scoring | {"alignment": ["AGAGTAGCAAATTTTGACTATAATTCTTATAGACATATGTTTTCAGCTCCTCTCCACCGCCGTCGACAACAAGCTCCGTGAGGATCTTGAGCGCATGAAGAAGATCCGTCTCCACAGAGGACTCAGACATTACTGGGGACTTCGCGT", "AGATTAGCAAATTTTGACTATAACTCTTATGGACTT-GGTTTTCAACTCCTCTCCACCGCTGTCGACAACAAGCTCCGTGAGGA-CTTGAGCGC--CAAGAAGATCCGTGTTCACATAGGACTCTAATATTA-TGGGGACATCACGT", "AG... | 0.0000 | 0.7219280948873623 | false |
b8be2b8b-913d-4f86-a44e-bafe6ac55e82 | ca26452b436b7fc2a626333b0c157c876a27b1cd | mutation_restriction | mutation_restriction | {"candidate_enzymes": ["HindIII", "SphI", "PstI", "HincII", "SalI", "XbaI", "BamHI", "SmaI", "XmaI", "KpnI", "AvaI", "SacI", "SstI", "EcoRI"], "new_codon": "CGC", "position": 171, "sequence": "AACAGGAAAGTATGCAAGAATGAAGGGTGCCCACACTAATGATGTGAAACAATTAACAGAGGCAGTACAAAAAATAGCCACAGAAAGCATAGTAATATGGGGAAAGACTCCTAAATTTAAATTACCC... | HincII | None | false |
5c9978ac-619b-4bbf-9a12-1393e22f3a50 | ca26452b436b7fc2a626333b0c157c876a27b1cd | mutation_restriction | mutation_restriction | {"candidate_enzymes": ["HindIII", "SphI", "PstI", "HincII", "SalI", "XbaI", "BamHI", "SmaI", "XmaI", "KpnI", "AvaI", "SacI", "SstI", "EcoRI"], "new_codon": "GAT", "position": 145, "sequence": "CTTAACTATGTTGCTCCTTTTACGCTATGTGGATACGCTGCTTTAATGCCTTTGTATCATGCTATTGCTTCCCGTATGGCTTTCATTTTCTCCTCCTTGTATAAATCCTGGTTGCTGTCTCTTTATG... | None | None | true |
a41e6ed7-ac40-448b-afa4-acfa1c68249e | ca26452b436b7fc2a626333b0c157c876a27b1cd | mutation_synonymous | mutation_synonymous | {"new_third_base": "C", "position": 18, "sequence": "TTACATGGCCTTAGTTTCTGTAAGTTGATTGACAAAAGCTCCCCGTTACTTATTAACGCTATTAACAATAACGAGCAGTTGTTCATGGAGTTTGACTTCTATCGGATCAATAGATTTGGTCGATGAATCGGTACCCTCGAGAAGCTTGCGGCCGCGGGGATCCAGACATGATAAGATACATTGATGAGTTTGGACAAACCACAACTAGAATGCAGTGAAAAAAATGCTTTATTTGTGAAATTTGTGATGCTATTGCTTTATTTGTAA... | N | N | true |
c7c58802-e428-4e75-9ee4-dd72c9135531 | ca26452b436b7fc2a626333b0c157c876a27b1cd | mutation_synonymous | mutation_synonymous | {"new_third_base": "T", "position": 213, "sequence": "CCCAGGTGTCCGGCCAGGGCGATAGCCTGCACGAGCACATTGCCAATCTGGCCGGCAGCCCCGCCATTAAGAAGGGCATCCTGCAGACAGTGAAGGTGGTGGACGAGCTCGTGAAAGTGATGGGCCGGCACAAGCCCGAGAACATCGTGATCGAAATGGCCAGAGAGAACCAGACCACCCAGAAGGGACAGAAGAACAGCCGCGAGAGAATGAAGCGGATCGAAGAGGGCATCAAAGAGCTGGGCAGCCAGATCCTGAAAGAACAC... | T | D | false |
76d4c739-fe6e-4f0d-9849-43f96e7bc183 | ca26452b436b7fc2a626333b0c157c876a27b1cd | orf_amino_acid | orf_aa_position | {"longest_orf_requirement": "unique_longest_aa", "orf_definition": "atg_to_first_in_frame_stop", "position": 33, "require_stop": true, "sequence": "GTTCGTGACCGCCGCCGGGATCACTCTCGGCATGGACGAGCTGTACAAGCGAATTGGTGGAGGGGGCGGTTCCGGTGGCGGAGGTTCCCGAATTCGTCGACGGAGATCTGATATGAATATTGGATTTATCGGCACCGGCATAATGGGTAAGCCGATGGCTTATAATTTACAA... | Leu | Thr | false |
928157e9-a0ca-47f2-8e2e-73845ad99955 | ca26452b436b7fc2a626333b0c157c876a27b1cd | orf_amino_acid | orf_aa_position | {"longest_orf_requirement": "unique_longest_aa", "orf_definition": "atg_to_first_in_frame_stop", "position": 30, "require_stop": true, "sequence": "TTAAATGGCCTAATGACCTCTATCTGCAGGATCGCAAGCTGGCAGGCATTCTGGTGGAGCTGACTGGCAAAACTGGCGATGCGGCGCAAATAGTCATTGGAGCCGGGATCAACATGGCAATGCGCCGTGTTGAAGAGAGTGTCGTTAATCAGGGGTGGATCACGCTGCAGGA... | Cys | Cys | true |
8d8f756f-6070-4342-b63e-580bd5015ab4 | ca26452b436b7fc2a626333b0c157c876a27b1cd | pairwise_distances | pairwise_distances | {"metric": "hamming", "sequence_a": "GAGGTGCTGGCCG", "sequence_b": "GAGGTCAAGGCCT"} | 4 | 4 | true |
4c8a1d9a-57a5-41b0-a044-936f231fcc62 | ca26452b436b7fc2a626333b0c157c876a27b1cd | pairwise_distances | pairwise_distances | {"metric": "p_distance", "sequence_a": "CTGCTGC", "sequence_b": "GTTCTGC"} | 0.2857 | 0.1428571429 | false |
a0941c38-b3f6-40e7-a4c7-064722c76790 | ca26452b436b7fc2a626333b0c157c876a27b1cd | primer_interactions | primer_interactions | {"primers": [{"name": "P1", "sequence": "CCCGCCACGCGCCACACCGT"}, {"name": "P2", "sequence": "GCAAGGTGTGGGTCGCGGAC"}, {"name": "P3", "sequence": "CGCCGCGGTGGCGGTCTGGA"}, {"name": "P4", "sequence": "TGGCGGTCTGGACCACGCCG"}, {"name": "P5", "sequence": "CCGACGTCGAGGTGCCCGAA"}]} | P1, P3, P4 | P3 | false |
6d298e6b-7d3f-4a7d-8e98-ab49a1df6c85 | ca26452b436b7fc2a626333b0c157c876a27b1cd | primer_interactions | primer_interactions | {"primers": [{"name": "P1", "sequence": "CAAGGAAGCTTTAGACAAGA"}, {"name": "P2", "sequence": "TGCTAGTTGGAGTAATAAAT"}, {"name": "P3", "sequence": "TAGTGAACGGATCTCGACGG"}, {"name": "P4", "sequence": "CGGGCCATTTACCGTAAGTT"}, {"name": "P5", "sequence": "TTACCATGGTGATGCGGTTT"}]} | None | None | true |
33a5186a-693b-4973-9082-47e01da8168e | ca26452b436b7fc2a626333b0c157c876a27b1cd | protein_hydrophobicity | protein_hydrophobicity | {"analysis_type": "region", "region_end": 30, "region_start": 24, "sequence": "WPAWHYAQYMTLWDFPTWQYIYVLVIAITM", "window_size": null} | 2.8571 | 2.857142857 | true |
7e9b4608-26d3-4ec2-bac3-dc66f68cd7cd | ca26452b436b7fc2a626333b0c157c876a27b1cd | protein_hydrophobicity | protein_hydrophobicity | {"analysis_type": "window_max", "region_end": null, "region_start": null, "sequence": "AAATGNRISRARYVGGATEFLKWWPNYGYTRRTVFGICAL", "window_size": 15} | 0.1533 | 0.1666666667 | false |
a4d3f3dd-e550-4d2c-b5cd-5d55679ba32c | ca26452b436b7fc2a626333b0c157c876a27b1cd | restriction_cloning | restriction_clone_primer_design | {"binding_len": 20, "enzyme_3p": "NheI", "enzyme_5p": "HindIII", "insert_sequence": "ATGGTGTCAAAAGGAGAAGAACTGTTCACCGGAGTGGTCCCAATCCTGGTGGAGCTGGACGGAGATGTCAATGGCCACAAGTTCAGCGTGAGCGGAGAGGGAGAAGGAGACGCTACATACGGCAAGCTGACTCTGAAATTCATTTGCACCACAGGGAAGCTGCCCGTGCCTTGGCCAACCCTGGTCACTACCCTGACATACGGCGTCCAGTGTTTTAGCAGATATCCAGACCACA... | GGGGAAGCTTATGGTGTCAAAAGGAGAAGA, GGGGGCTAGCTTACTTGTACAGCTCATCCA | GGGGAAGCTTATGGTGTCAAAAGGAGAAGA,GGGGGCTAGCTTACTTGTACAGCTCATCCA | true |
0e1db8fb-89dd-497d-ace7-82f6d4add315 | ca26452b436b7fc2a626333b0c157c876a27b1cd | restriction_cloning | restriction_clone_primer_design | {"binding_len": 20, "enzyme_3p": "NdeI", "enzyme_5p": "AgeI", "insert_sequence": "ATGGCCACAACCATGGTGAGCAAGGGCGAGGAGCTGTTCACCGGGGTGGTGCCCATCCTGGTCGAGCTGGACGGCGACGTAAACGGCCACAAGTTCAGCGTGTCCGGCGAGGGCGAGGGCGATGCCACCTACGGCAAGCTGACCCTGAAGCTGATCTGCACCACCGGCAAGCTGCCCGTGCCCTGGCCCACCCTCGTGACCACCCTGGGCTACGGCCTGCAGTGCTTCGCCCGCTACC... | GGGGACCGGTATGGCCACAACCATGGTGAG, GGGGCATATGTTACTTGTACAGCTCGTCCA | GGGGACCGGTATGGCCACAACCATGGTGAGC,GGGGCATATGTTACTTGTACAGCTCGTCCA | false |
7e36c68a-3f8d-49fd-b8e2-465c4058b7aa | ca26452b436b7fc2a626333b0c157c876a27b1cd | restriction_counts | restriction_counts | {"enzyme": "HincII", "gene_end": 2544, "gene_start": 0, "sequence": "AAGAGCGAGGAAACCATCACCCCCTGGAACTTCGAGGAAGTGGTGGACAAGGGCGCTTCCGCCCAGAGCTTCATCGAGCGGATGACCAACTTCGATAAGAACCTGCCCAACGAGAAGGTGCTGCCCAAGCACAGCCTGCTGTACGAGTACTTCACCGTGTATAACGAGCTGACCAAAGTGAAATACGTGACCGAGGGAATGAGAAAGCCCGCCTTCCTGAGCGGCGAGCAGAAAAAGGCCATCGTGGACCT... | 2 | 0 | false |
fa02d67c-9548-4a08-9331-b2bd64d1a5fc | ca26452b436b7fc2a626333b0c157c876a27b1cd | restriction_counts | restriction_counts | {"enzyme": "SalI", "gene_end": 682, "gene_start": 1, "sequence": "TTTGAAGACAAAAAGGCCTGTAATCAGCTGTAATATCTGCCAAATCAGATTTAACAGCCAGAGCCAGGCAGAAGCCCATTATAAAGGAAACAGACATGCGAGGAGAGTAAAAGGAATTGAGGCTGCAAAAACAAGAGGAAGAGAGCCTGGTGTCAGAGAACCTGGTGACCCAGCGCCGCCTGGCAGTACGCCAACAAATGGTGATGGTGTAGCACCAAGACCTGTATCAATGGAAAATGGCCTAGGACCTGCCC... | 0 | 0 | true |
9a4f318d-c837-4633-92e6-cc21cf0cc53a | ca26452b436b7fc2a626333b0c157c876a27b1cd | restriction_digest | restriction_fragment_lengths | {"enzymes": ["PstI", "BamHI"], "ordering": "sorted_ascending", "sequence": "GAAACTGAAGAGTGTGAAAGAGCTGCTGGGGATCACCATCATGGAAAGAAGCAGCTTCGAGAAGAATCCCATCGACTTTCTGGAAGCCAAGGGCTACAAAGAAGTGAAAAAGGACCTGATCATCAAGCTGCCTAAGTACTCCCTGTTCGAGCTGGAAAACGGCCGGAAGAGAATGCTGGCCTCTGCCGGCGAACTGCAGAAGGGAAACGAACTGGCCCTGCCCTCCAAATATGTGAACTTCCTG... | 77, 133, 198, 672 | 81,134,197,673 | false |
7df92b5d-9dae-4bb0-822e-09538993e8dd | ca26452b436b7fc2a626333b0c157c876a27b1cd | restriction_digest | restriction_fragment_lengths | {"enzymes": ["PstI", "NcoI"], "ordering": "sorted_ascending", "sequence": "TCTGCCTAGAGAGCACATTGAGGGAGGCGGCGGACCTAGCGACCCCTCAGAGTTCGGCACAAAGTTCAGAGCCCCTCCCAGAAGCGCTGCCGCCAGCGAGGACGCCAGACAGCCTGCCAAGCCTCCCTACAGCTACATCGCCCTGATCACCATGGCCATCCTGCAGAACCCCCACAAGAGACTGACCCTGAGCGGAATCTGCGCCTTCATCAGCGGAAGATTCCCCTACTACAGGAGAAAGTTCC... | 15, 93, 150 | 15,93,150 | true |
ffd2c89d-4e0f-4352-90ef-035f0a95f0bf | ca26452b436b7fc2a626333b0c157c876a27b1cd | sequence_complexity | sequence_complexity | {"metric": "repeat_density", "sequence": "CAGATTTATCAGCAATAA", "window_size": 4} | 0.0000 | 0 | true |
2a6fe0e5-4a31-489d-b0c7-f2404124ca9d | ca26452b436b7fc2a626333b0c157c876a27b1cd | sequence_complexity | sequence_complexity | {"metric": "repeat_density", "sequence": "TAAAGGGAGCCCCCGATTT", "window_size": 4} | 21.0526 | 0 | false |
10fc5381-9381-4bb3-961e-6825feeb2e12 | ca26452b436b7fc2a626333b0c157c876a27b1cd | tm_calculations | tm_calculations | {"method": "wallace", "salt_concentration_mm": 100.0, "sequence": "TGCTGGTTATTGTGCTGTCTCATCATTTTGGCAAAG"} | 85.40 | 85.4 | true |
4e81c9d7-61bb-4826-90b2-06165a8688cc | ca26452b436b7fc2a626333b0c157c876a27b1cd | tm_calculations | tm_calculations | {"method": "salt_adjusted", "salt_concentration_mm": 50.0, "sequence": "TTCAGGCTGCGCAACT"} | 28.40 | 45.47 | false |
SEQQA reward reference
Regression fixture for trl.internal.seqqa.reward, used by tests/internal/test_seqqa_rewards.py.
39 hand-checked answers across 20 SEQQA validator types: for each the
answer string, the ideal reference answer, and whether seqqa_accuracy_reward is expected to score it
1.0 (expected = true) or 0.0. validator_params_json is the serialised validator payload, and
source_id / source_revision point at the generated question this row was pinned from.
Values are pinned to real generated questions, so regenerating them is not equivalent to editing this set; change a row only alongside the reward change that motivates it.
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