GENTEL-Lab/Fold2Reason-Qwen3.5-9B
Updated
arguments listlengths 0 4 | cache_id stringclasses 1k
values | candidate_labels listlengths 2 32 | canonical_answer stringclasses 32
values | eval_prompt_ids listlengths 71 2.17k | evidence unknown | generator_version stringclasses 1
value | matched_shuffle_donor_id stringclasses 656
values | matched_shuffle_donor_sequence stringclasses 656
values | negative_pool_id stringclasses 1k
values | operator stringclasses 12
values | ordinary_answer stringclasses 2
values | ordinary_question stringlengths 61 87 | protein_id stringclasses 1k
values | question stringlengths 53 2.5k | sample_id stringlengths 33 43 | sequence stringclasses 1k
values | shuffled_answer stringclasses 32
values | split stringclasses 1
value |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
[
13,
24
] | fold_pilot_v1:seq:MGYP001038767075 | [
"A",
"B"
] | B | [
248045,
8678,
198,
15666,
279,
12465,
3296,
13,
3301,
1132,
279,
2904,
2306,
13,
248046,
198,
248045,
846,
198,
1289,
36972,
8240,
25,
198,
42673,
9455,
22336,
2926,
74264,
1825,
53,
29696,
54,
5318,
2926,
42,
48,
42,
5948,
42,
54093,
... | {
"distance": 29.5394649506,
"source_structure_id": "MGYP001038767075",
"threshold": 8
} | openfold_spatial_bridge_v2.2-independent | fold_pilot_v1:seq_msa:MGYP000907129071 | MKIKIKSLDKFSQNYEKEFELIKVTDLDKKKEYHYSDEYGICKIVDNHDFIEIYRRGEINSKQVFKVSEHTPFIYMTKQFHTKYKIFTKKFEKENDKMTLEYDIMDDDNVINNIKLNIYFMKK | train::fold_pilot_v1:seq:MGYP001038767075 | CONTACT_SHORT | B | Which residue letter is alphabetically earlier? A=position 6 (Y); B=position 83 (K). | MGYP001038767075 | Are residues 14 and 25 within 8 angstroms? A=Yes; B=No. | MGYP001038767075::CONTACT_SHORT::00 | MKNNNYAYANIAGVVLWSDAYKQKNGKYLHKYIVSVQDNVKKHNFHIISFDEKSSKPTYKKNDLIKINGTLKVNSFKKDDEWKNEVYIQAKEIESLDE | B | train |
[
32,
44
] | fold_pilot_v1:seq:MGYP001038767075 | [
"A",
"B"
] | A | [
248045,
8678,
198,
15666,
279,
12465,
3296,
13,
3301,
1132,
279,
2904,
2306,
13,
248046,
198,
248045,
846,
198,
1289,
36972,
8240,
25,
198,
42673,
9455,
22336,
2926,
74264,
1825,
53,
29696,
54,
5318,
2926,
42,
48,
42,
5948,
42,
54093,
... | {
"distance": 5.6648035049,
"source_structure_id": "MGYP001038767075",
"threshold": 8
} | openfold_spatial_bridge_v2.2-independent | fold_pilot_v1:seq_msa:MGYP000907129071 | MKIKIKSLDKFSQNYEKEFELIKVTDLDKKKEYHYSDEYGICKIVDNHDFIEIYRRGEINSKQVFKVSEHTPFIYMTKQFHTKYKIFTKKFEKENDKMTLEYDIMDDDNVINNIKLNIYFMKK | train::fold_pilot_v1:seq:MGYP001038767075 | CONTACT_MEDIUM | B | Does amino acid A occur an even number of times? A=Yes; B=No. | MGYP001038767075 | Are residues 33 and 45 within 8 angstroms? A=Yes; B=No. | MGYP001038767075::CONTACT_MEDIUM::01 | MKNNNYAYANIAGVVLWSDAYKQKNGKYLHKYIVSVQDNVKKHNFHIISFDEKSSKPTYKKNDLIKINGTLKVNSFKKDDEWKNEVYIQAKEIESLDE | B | train |
[
19,
54
] | fold_pilot_v1:seq:MGYP001038767075 | [
"A",
"B"
] | A | [
248045,
8678,
198,
15666,
279,
12465,
3296,
13,
3301,
1132,
279,
2904,
2306,
13,
248046,
198,
248045,
846,
198,
1289,
36972,
8240,
25,
198,
42673,
9455,
22336,
2926,
74264,
1825,
53,
29696,
54,
5318,
2926,
42,
48,
42,
5948,
42,
54093,
... | {
"distance": 5.8111963272,
"source_structure_id": "MGYP001038767075",
"threshold": 8
} | openfold_spatial_bridge_v2.2-independent | fold_pilot_v1:seq_msa:MGYP000907129071 | MKIKIKSLDKFSQNYEKEFELIKVTDLDKKKEYHYSDEYGICKIVDNHDFIEIYRRGEINSKQVFKVSEHTPFIYMTKQFHTKYKIFTKKFEKENDKMTLEYDIMDDDNVINNIKLNIYFMKK | train::fold_pilot_v1:seq:MGYP001038767075 | CONTACT_LONG | B | Is the residue at position 51 in the set AILMFWVY? A=Yes; B=No. | MGYP001038767075 | Are residues 20 and 55 within 8 angstroms? A=Yes; B=No. | MGYP001038767075::CONTACT_LONG::02 | MKNNNYAYANIAGVVLWSDAYKQKNGKYLHKYIVSVQDNVKKHNFHIISFDEKSSKPTYKKNDLIKINGTLKVNSFKKDDEWKNEVYIQAKEIESLDE | A | train |
[
25,
41,
33,
43
] | fold_pilot_v1:seq:MGYP001038767075 | [
"A",
"B"
] | B | [
248045,
8678,
198,
15666,
279,
12465,
3296,
13,
3301,
1132,
279,
2904,
2306,
13,
248046,
198,
248045,
846,
198,
1289,
36972,
8240,
25,
198,
42673,
9455,
22336,
2926,
74264,
1825,
53,
29696,
54,
5318,
2926,
42,
48,
42,
5948,
42,
54093,
... | {
"distance_a": 34.909740448,
"distance_b": 5.4083266258,
"source_structure_id": "MGYP001038767075"
} | openfold_spatial_bridge_v2.2-independent | fold_pilot_v1:seq_msa:MGYP000907129071 | MKIKIKSLDKFSQNYEKEFELIKVTDLDKKKEYHYSDEYGICKIVDNHDFIEIYRRGEINSKQVFKVSEHTPFIYMTKQFHTKYKIFTKKFEKENDKMTLEYDIMDDDNVINNIKLNIYFMKK | train::fold_pilot_v1:seq:MGYP001038767075 | DISTANCE_ORDER_1 | B | Which residue letter is alphabetically earlier? A=position 1 (M); B=position 47 (I). | MGYP001038767075 | Which pair is closer in the target fold? A=(26,42); B=(34,44). | MGYP001038767075::DISTANCE_ORDER_1::03 | MKNNNYAYANIAGVVLWSDAYKQKNGKYLHKYIVSVQDNVKKHNFHIISFDEKSSKPTYKKNDLIKINGTLKVNSFKKDDEWKNEVYIQAKEIESLDE | A | train |
[
7,
78,
66,
91
] | fold_pilot_v1:seq:MGYP001038767075 | [
"A",
"B"
] | B | [
248045,
8678,
198,
15666,
279,
12465,
3296,
13,
3301,
1132,
279,
2904,
2306,
13,
248046,
198,
248045,
846,
198,
1289,
36972,
8240,
25,
198,
42673,
9455,
22336,
2926,
74264,
1825,
53,
29696,
54,
5318,
2926,
42,
48,
42,
5948,
42,
54093,
... | {
"distance_a": 30.9312133789,
"distance_b": 5.8591814041,
"source_structure_id": "MGYP001038767075"
} | openfold_spatial_bridge_v2.2-independent | fold_pilot_v1:seq_msa:MGYP000907129071 | MKIKIKSLDKFSQNYEKEFELIKVTDLDKKKEYHYSDEYGICKIVDNHDFIEIYRRGEINSKQVFKVSEHTPFIYMTKQFHTKYKIFTKKFEKENDKMTLEYDIMDDDNVINNIKLNIYFMKK | train::fold_pilot_v1:seq:MGYP001038767075 | DISTANCE_ORDER_2 | B | Does amino acid L occur an even number of times? A=Yes; B=No. | MGYP001038767075 | Which pair is closer in the target fold? A=(8,79); B=(67,92). | MGYP001038767075::DISTANCE_ORDER_2::04 | MKNNNYAYANIAGVVLWSDAYKQKNGKYLHKYIVSVQDNVKKHNFHIISFDEKSSKPTYKKNDLIKINGTLKVNSFKKDDEWKNEVYIQAKEIESLDE | A | train |
[
53,
56,
44,
47
] | fold_pilot_v1:seq:MGYP001038767075 | [
"A",
"B",
"C"
] | B | [
248045,
8678,
198,
15666,
279,
12465,
3296,
13,
3301,
1132,
279,
2904,
2306,
13,
248046,
198,
248045,
846,
198,
1289,
36972,
8240,
25,
198,
42673,
9455,
22336,
2926,
74264,
1825,
53,
29696,
54,
5318,
2926,
42,
48,
42,
5948,
42,
54093,
... | {
"cosine": -0.9982600212,
"source_structure_id": "MGYP001038767075"
} | openfold_spatial_bridge_v2.2-independent | fold_pilot_v1:seq_msa:MGYP000907129071 | MKIKIKSLDKFSQNYEKEFELIKVTDLDKKKEYHYSDEYGICKIVDNHDFIEIYRRGEINSKQVFKVSEHTPFIYMTKQFHTKYKIFTKKFEKENDKMTLEYDIMDDDNVINNIKLNIYFMKK | train::fold_pilot_v1:seq:MGYP001038767075 | SEGMENT_ORIENTATION | B | Is the residue at position 18 in the set AILMFWVY? A=Yes; B=No. | MGYP001038767075 | How are segments 54-57 and 45-48 oriented? A=parallel; B=antiparallel; C=orthogonal-like. | MGYP001038767075::SEGMENT_ORIENTATION::05 | MKNNNYAYANIAGVVLWSDAYKQKNGKYLHKYIVSVQDNVKKHNFHIISFDEKSSKPTYKKNDLIKINGTLKVNSFKKDDEWKNEVYIQAKEIESLDE | C | train |
[
79,
46
] | fold_pilot_v1:seq:MGYP001038767075 | [
"A",
"B"
] | B | [
248045,
8678,
198,
15666,
279,
12465,
3296,
13,
3301,
1132,
279,
2904,
2306,
13,
248046,
198,
248045,
846,
198,
1289,
36972,
8240,
25,
198,
42673,
9455,
22336,
2926,
74264,
1825,
53,
29696,
54,
5318,
2926,
42,
48,
42,
5948,
42,
54093,
... | {
"radius_a": 25.9266090393,
"radius_b": 0.4957676828,
"source_structure_id": "MGYP001038767075"
} | openfold_spatial_bridge_v2.2-independent | fold_pilot_v1:seq_msa:MGYP000907129071 | MKIKIKSLDKFSQNYEKEFELIKVTDLDKKKEYHYSDEYGICKIVDNHDFIEIYRRGEINSKQVFKVSEHTPFIYMTKQFHTKYKIFTKKFEKENDKMTLEYDIMDDDNVINNIKLNIYFMKK | train::fold_pilot_v1:seq:MGYP001038767075 | NEARER_CENTER | A | Which residue letter is alphabetically earlier? A=position 31 (K); B=position 29 (L). | MGYP001038767075 | Which residue is nearer the fold center? A=residue 80; B=residue 47. | MGYP001038767075::NEARER_CENTER::06 | MKNNNYAYANIAGVVLWSDAYKQKNGKYLHKYIVSVQDNVKKHNFHIISFDEKSSKPTYKKNDLIKINGTLKVNSFKKDDEWKNEVYIQAKEIESLDE | A | train |
[
3,
94
] | fold_pilot_v1:seq:MGYP001038767075 | [
"A",
"B"
] | A | [
248045,
8678,
198,
15666,
279,
12465,
3296,
13,
3301,
1132,
279,
2904,
2306,
13,
248046,
198,
248045,
846,
198,
1289,
36972,
8240,
25,
198,
42673,
9455,
22336,
2926,
74264,
1825,
53,
29696,
54,
5318,
2926,
42,
48,
42,
5948,
42,
54093,
... | {
"signed_projection": 17.4037952423,
"source_structure_id": "MGYP001038767075"
} | openfold_spatial_bridge_v2.2-independent | fold_pilot_v1:seq_msa:MGYP000907129071 | MKIKIKSLDKFSQNYEKEFELIKVTDLDKKKEYHYSDEYGICKIVDNHDFIEIYRRGEINSKQVFKVSEHTPFIYMTKQFHTKYKIFTKKFEKENDKMTLEYDIMDDDNVINNIKLNIYFMKK | train::fold_pilot_v1:seq:MGYP001038767075 | LOCAL_FRAME_DIRECTION | B | Does amino acid P occur an even number of times? A=Yes; B=No. | MGYP001038767075 | In residue 4's CA-to-C local axis, is residue 95 on the positive side? A=positive; B=negative. | MGYP001038767075::LOCAL_FRAME_DIRECTION::07 | MKNNNYAYANIAGVVLWSDAYKQKNGKYLHKYIVSVQDNVKKHNFHIISFDEKSSKPTYKKNDLIKINGTLKVNSFKKDDEWKNEVYIQAKEIESLDE | A | train |
[
52,
53,
54,
55
] | fold_pilot_v1:seq:MGYP001038767075 | [
"A",
"B"
] | B | [
248045,
8678,
198,
15666,
279,
12465,
3296,
13,
3301,
1132,
279,
2904,
2306,
13,
248046,
198,
248045,
846,
198,
1289,
36972,
8240,
25,
198,
42673,
9455,
22336,
2926,
74264,
1825,
53,
29696,
54,
5318,
2926,
42,
48,
42,
5948,
42,
54093,
... | {
"signed_volume": -24.7740135193,
"source_structure_id": "MGYP001038767075"
} | openfold_spatial_bridge_v2.2-independent | fold_pilot_v1:seq_msa:MGYP000907129071 | MKIKIKSLDKFSQNYEKEFELIKVTDLDKKKEYHYSDEYGICKIVDNHDFIEIYRRGEINSKQVFKVSEHTPFIYMTKQFHTKYKIFTKKFEKENDKMTLEYDIMDDDNVINNIKLNIYFMKK | train::fold_pilot_v1:seq:MGYP001038767075 | CA_CHIRALITY | B | Is the residue at position 27 in the set AILMFWVY? A=Yes; B=No. | MGYP001038767075 | What is the signed CA chirality of residues 53-56? A=positive; B=negative. | MGYP001038767075::CA_CHIRALITY::08 | MKNNNYAYANIAGVVLWSDAYKQKNGKYLHKYIVSVQDNVKKHNFHIISFDEKSSKPTYKKNDLIKINGTLKVNSFKKDDEWKNEVYIQAKEIESLDE | B | train |
[] | fold_pilot_v1:seq:MGYP001038767075 | [
"A",
"B",
"C",
"D",
"E",
"F",
"G",
"H",
"I",
"J",
"K",
"L",
"M",
"N",
"O",
"P",
"Q",
"R",
"S",
"T",
"U",
"V",
"W",
"X",
"Y",
"Z",
"a",
"b",
"c",
"d",
"e",
"f"
] | Y | [
248045,
8678,
198,
15666,
279,
12465,
3296,
13,
3301,
1132,
279,
2904,
2306,
13,
248046,
198,
248045,
846,
198,
1289,
36972,
8240,
25,
198,
42673,
9455,
22336,
2926,
74264,
1825,
53,
29696,
54,
5318,
2926,
42,
48,
42,
5948,
42,
54093,
... | {
"candidate_ids": [
"fold_pilot_v1:seq:MGYP001150538235",
"fold_pilot_v1:seq_msa:MGYP001253612869",
"fold_pilot_v1:seq_msa:MGYP001265569385",
"fold_pilot_v1:seq:MGYP001179803580",
"fold_pilot_v1:seq_msa_tpl:MGYP000922635028",
"fold_pilot_v1:seq_msa_tpl:MGYP001353946771",
"fold_pilot_v1:se... | openfold_spatial_bridge_v2.2-independent | fold_pilot_v1:seq_msa:MGYP000907129071 | MKIKIKSLDKFSQNYEKEFELIKVTDLDKKKEYHYSDEYGICKIVDNHDFIEIYRRGEINSKQVFKVSEHTPFIYMTKQFHTKYKIFTKKFEKENDKMTLEYDIMDDDNVINNIKLNIYFMKK | train::fold_pilot_v1:seq:MGYP001038767075 | RETRIEVAL_32 | B | Which residue letter is alphabetically earlier? A=position 53 (K); B=position 50 (F). | MGYP001038767075 | Which candidate contact fingerprint matches the sequence?
A: n=97 rg=13.0 ss=1 contacts=23-28,10-15,2-7,16-20,3-7,15-22,13-17,26-31
B: n=94 rg=13.1 ss=1 contacts=8-12,14-19,7-29,2-6,7-13,25-31,7-28,8-13
C: n=119 rg=13.7 ss=1 contacts=1-28,3-11,5-9,1-28,5-8,1-5,9-14,1-6
D: n=106 rg=12.9 ss=1 contacts=2-30,22-26,3-18,13-... | MGYP001038767075::RETRIEVAL_32::09 | MKNNNYAYANIAGVVLWSDAYKQKNGKYLHKYIVSVQDNVKKHNFHIISFDEKSSKPTYKKNDLIKINGTLKVNSFKKDDEWKNEVYIQAKEIESLDE | T | train |
[
9,
68,
33
] | fold_pilot_v1:seq:MGYP001038767075 | [
"A",
"B",
"C"
] | A | [
248045,
8678,
198,
15666,
279,
12465,
3296,
13,
3301,
1132,
279,
2904,
2306,
13,
248046,
198,
248045,
846,
198,
1289,
36972,
8240,
25,
198,
42673,
9455,
22336,
2926,
74264,
1825,
53,
29696,
54,
5318,
2926,
42,
48,
42,
5948,
42,
54093,
... | {
"distance_a": 6.5314621925,
"distance_b": 12.1889286041,
"source_structure_id": "MGYP001038767075"
} | openfold_spatial_bridge_v2.2-independent | fold_pilot_v1:seq_msa:MGYP000907129071 | MKIKIKSLDKFSQNYEKEFELIKVTDLDKKKEYHYSDEYGICKIVDNHDFIEIYRRGEINSKQVFKVSEHTPFIYMTKQFHTKYKIFTKKFEKENDKMTLEYDIMDDDNVINNIKLNIYFMKK | train::fold_pilot_v1:seq:MGYP001038767075 | MULTI_CONSTRAINT | B | Does amino acid K occur an even number of times? A=Yes; B=No. | MGYP001038767075 | Which option is both closer to residue 10 and within 8 angstroms? A=residue 69; B=residue 34; C=neither. | MGYP001038767075::MULTI_CONSTRAINT::10 | MKNNNYAYANIAGVVLWSDAYKQKNGKYLHKYIVSVQDNVKKHNFHIISFDEKSSKPTYKKNDLIKINGTLKVNSFKKDDEWKNEVYIQAKEIESLDE | A | train |
[
30,
46
] | fold_pilot_v1:seq:MGYP001038767075 | [
"A",
"B"
] | A | [
248045,
8678,
198,
15666,
279,
12465,
3296,
13,
3301,
1132,
279,
2904,
2306,
13,
248046,
198,
248045,
846,
198,
1289,
36972,
8240,
25,
198,
42673,
9455,
22336,
2926,
74264,
1825,
53,
29696,
54,
5318,
2926,
42,
48,
42,
5948,
42,
54093,
... | {
"distance": 5.6648035049,
"source_structure_id": "MGYP001038767075",
"threshold": 8
} | openfold_spatial_bridge_v2.2-independent | fold_pilot_v1:seq_msa:MGYP000907129071 | MKIKIKSLDKFSQNYEKEFELIKVTDLDKKKEYHYSDEYGICKIVDNHDFIEIYRRGEINSKQVFKVSEHTPFIYMTKQFHTKYKIFTKKFEKENDKMTLEYDIMDDDNVINNIKLNIYFMKK | train::fold_pilot_v1:seq:MGYP001038767075 | CONTACT_ANY | B | Is the residue at position 56 in the set AILMFWVY? A=Yes; B=No. | MGYP001038767075 | Are residues 31 and 47 within 8 angstroms? A=Yes; B=No. | MGYP001038767075::CONTACT_ANY::11 | MKNNNYAYANIAGVVLWSDAYKQKNGKYLHKYIVSVQDNVKKHNFHIISFDEKSSKPTYKKNDLIKINGTLKVNSFKKDDEWKNEVYIQAKEIESLDE | A | train |
[
49,
60
] | fold_pilot_v1:seq:MGYP001229854048 | [
"A",
"B"
] | A | [
248045,
8678,
198,
15666,
279,
12465,
3296,
13,
3301,
1132,
279,
2904,
2306,
13,
248046,
198,
248045,
846,
198,
1289,
36972,
8240,
25,
198,
53327,
42,
1425,
43,
3281,
39,
22336,
45,
18579,
26132,
1178,
54,
62811,
11662,
37,
3950,
56,
... | {
"distance": 7.8911352158,
"source_structure_id": "MGYP001229854048",
"threshold": 8
} | openfold_spatial_bridge_v2.2-independent | fold_pilot_v1:seq:MGYP001044118038 | MLDDRSINEFLTKAVEESIEEILKPVVDRSVTIALITTKELVLKDFAYDSDCDRISEASQHIIQSLAGSLALVTCREPLRLQMNNFVLKALS | train::fold_pilot_v1:seq:MGYP001229854048 | CONTACT_SHORT | A | Which residue letter is alphabetically earlier? A=position 43 (I); B=position 6 (L). | MGYP001229854048 | Are residues 50 and 61 within 8 angstroms? A=Yes; B=No. | MGYP001229854048::CONTACT_SHORT::00 | MNKEDLKEHNYNMYFKSSWKFANNFLLYENILNEYNTLKNNIINEYYTENKHYGYNNLDAYRYAIKRLRFSFRLKNKKKELDDAYINKNNSLINYDKYFNIYNN | B | train |
[
78,
99
] | fold_pilot_v1:seq:MGYP001229854048 | [
"A",
"B"
] | B | [
248045,
8678,
198,
15666,
279,
12465,
3296,
13,
3301,
1132,
279,
2904,
2306,
13,
248046,
198,
248045,
846,
198,
1289,
36972,
8240,
25,
198,
53327,
42,
1425,
43,
3281,
39,
22336,
45,
18579,
26132,
1178,
54,
62811,
11662,
37,
3950,
56,
... | {
"distance": 31.8455657959,
"source_structure_id": "MGYP001229854048",
"threshold": 8
} | openfold_spatial_bridge_v2.2-independent | fold_pilot_v1:seq:MGYP001044118038 | MLDDRSINEFLTKAVEESIEEILKPVVDRSVTIALITTKELVLKDFAYDSDCDRISEASQHIIQSLAGSLALVTCREPLRLQMNNFVLKALS | train::fold_pilot_v1:seq:MGYP001229854048 | CONTACT_MEDIUM | A | Does amino acid N occur an even number of times? A=Yes; B=No. | MGYP001229854048 | Are residues 79 and 100 within 8 angstroms? A=Yes; B=No. | MGYP001229854048::CONTACT_MEDIUM::01 | MNKEDLKEHNYNMYFKSSWKFANNFLLYENILNEYNTLKNNIINEYYTENKHYGYNNLDAYRYAIKRLRFSFRLKNKKKELDDAYINKNNSLINYDKYFNIYNN | B | train |
[
23,
83
] | fold_pilot_v1:seq:MGYP001229854048 | [
"A",
"B"
] | A | [
248045,
8678,
198,
15666,
279,
12465,
3296,
13,
3301,
1132,
279,
2904,
2306,
13,
248046,
198,
248045,
846,
198,
1289,
36972,
8240,
25,
198,
53327,
42,
1425,
43,
3281,
39,
22336,
45,
18579,
26132,
1178,
54,
62811,
11662,
37,
3950,
56,
... | {
"distance": 6.8476271629,
"source_structure_id": "MGYP001229854048",
"threshold": 8
} | openfold_spatial_bridge_v2.2-independent | fold_pilot_v1:seq:MGYP001044118038 | MLDDRSINEFLTKAVEESIEEILKPVVDRSVTIALITTKELVLKDFAYDSDCDRISEASQHIIQSLAGSLALVTCREPLRLQMNNFVLKALS | train::fold_pilot_v1:seq:MGYP001229854048 | CONTACT_LONG | B | Is the residue at position 49 in the set AILMFWVY? A=Yes; B=No. | MGYP001229854048 | Are residues 24 and 84 within 8 angstroms? A=Yes; B=No. | MGYP001229854048::CONTACT_LONG::02 | MNKEDLKEHNYNMYFKSSWKFANNFLLYENILNEYNTLKNNIINEYYTENKHYGYNNLDAYRYAIKRLRFSFRLKNKKKELDDAYINKNNSLINYDKYFNIYNN | B | train |
[
27,
49,
48,
63
] | fold_pilot_v1:seq:MGYP001229854048 | [
"A",
"B"
] | B | [
248045,
8678,
198,
15666,
279,
12465,
3296,
13,
3301,
1132,
279,
2904,
2306,
13,
248046,
198,
248045,
846,
198,
1289,
36972,
8240,
25,
198,
53327,
42,
1425,
43,
3281,
39,
22336,
45,
18579,
26132,
1178,
54,
62811,
11662,
37,
3950,
56,
... | {
"distance_a": 32.4632110596,
"distance_b": 8.672369957,
"source_structure_id": "MGYP001229854048"
} | openfold_spatial_bridge_v2.2-independent | fold_pilot_v1:seq:MGYP001044118038 | MLDDRSINEFLTKAVEESIEEILKPVVDRSVTIALITTKELVLKDFAYDSDCDRISEASQHIIQSLAGSLALVTCREPLRLQMNNFVLKALS | train::fold_pilot_v1:seq:MGYP001229854048 | DISTANCE_ORDER_1 | A | Which residue letter is alphabetically earlier? A=position 24 (N); B=position 67 (R). | MGYP001229854048 | Which pair is closer in the target fold? A=(28,50); B=(49,64). | MGYP001229854048::DISTANCE_ORDER_1::03 | MNKEDLKEHNYNMYFKSSWKFANNFLLYENILNEYNTLKNNIINEYYTENKHYGYNNLDAYRYAIKRLRFSFRLKNKKKELDDAYINKNNSLINYDKYFNIYNN | A | train |
[
20,
83,
5,
43
] | fold_pilot_v1:seq:MGYP001229854048 | [
"A",
"B"
] | A | [
248045,
8678,
198,
15666,
279,
12465,
3296,
13,
3301,
1132,
279,
2904,
2306,
13,
248046,
198,
248045,
846,
198,
1289,
36972,
8240,
25,
198,
53327,
42,
1425,
43,
3281,
39,
22336,
45,
18579,
26132,
1178,
54,
62811,
11662,
37,
3950,
56,
... | {
"distance_a": 11.1216001511,
"distance_b": 56.6000900269,
"source_structure_id": "MGYP001229854048"
} | openfold_spatial_bridge_v2.2-independent | fold_pilot_v1:seq:MGYP001044118038 | MLDDRSINEFLTKAVEESIEEILKPVVDRSVTIALITTKELVLKDFAYDSDCDRISEASQHIIQSLAGSLALVTCREPLRLQMNNFVLKALS | train::fold_pilot_v1:seq:MGYP001229854048 | DISTANCE_ORDER_2 | A | Does amino acid M occur an even number of times? A=Yes; B=No. | MGYP001229854048 | Which pair is closer in the target fold? A=(21,84); B=(6,44). | MGYP001229854048::DISTANCE_ORDER_2::04 | MNKEDLKEHNYNMYFKSSWKFANNFLLYENILNEYNTLKNNIINEYYTENKHYGYNNLDAYRYAIKRLRFSFRLKNKKKELDDAYINKNNSLINYDKYFNIYNN | B | train |
[
24,
27,
89,
92
] | fold_pilot_v1:seq:MGYP001229854048 | [
"A",
"B",
"C"
] | B | [
248045,
8678,
198,
15666,
279,
12465,
3296,
13,
3301,
1132,
279,
2904,
2306,
13,
248046,
198,
248045,
846,
198,
1289,
36972,
8240,
25,
198,
53327,
42,
1425,
43,
3281,
39,
22336,
45,
18579,
26132,
1178,
54,
62811,
11662,
37,
3950,
56,
... | {
"cosine": -0.8693082333000001,
"source_structure_id": "MGYP001229854048"
} | openfold_spatial_bridge_v2.2-independent | fold_pilot_v1:seq:MGYP001044118038 | MLDDRSINEFLTKAVEESIEEILKPVVDRSVTIALITTKELVLKDFAYDSDCDRISEASQHIIQSLAGSLALVTCREPLRLQMNNFVLKALS | train::fold_pilot_v1:seq:MGYP001229854048 | SEGMENT_ORIENTATION | B | Is the residue at position 23 in the set AILMFWVY? A=Yes; B=No. | MGYP001229854048 | How are segments 25-28 and 90-93 oriented? A=parallel; B=antiparallel; C=orthogonal-like. | MGYP001229854048::SEGMENT_ORIENTATION::05 | MNKEDLKEHNYNMYFKSSWKFANNFLLYENILNEYNTLKNNIINEYYTENKHYGYNNLDAYRYAIKRLRFSFRLKNKKKELDDAYINKNNSLINYDKYFNIYNN | A | train |
[
1,
27
] | fold_pilot_v1:seq:MGYP001229854048 | [
"A",
"B"
] | B | [
248045,
8678,
198,
15666,
279,
12465,
3296,
13,
3301,
1132,
279,
2904,
2306,
13,
248046,
198,
248045,
846,
198,
1289,
36972,
8240,
25,
198,
53327,
42,
1425,
43,
3281,
39,
22336,
45,
18579,
26132,
1178,
54,
62811,
11662,
37,
3950,
56,
... | {
"radius_a": 40.7031021118,
"radius_b": 3.2584512234,
"source_structure_id": "MGYP001229854048"
} | openfold_spatial_bridge_v2.2-independent | fold_pilot_v1:seq:MGYP001044118038 | MLDDRSINEFLTKAVEESIEEILKPVVDRSVTIALITTKELVLKDFAYDSDCDRISEASQHIIQSLAGSLALVTCREPLRLQMNNFVLKALS | train::fold_pilot_v1:seq:MGYP001229854048 | NEARER_CENTER | B | Which residue letter is alphabetically earlier? A=position 55 (Y); B=position 57 (N). | MGYP001229854048 | Which residue is nearer the fold center? A=residue 2; B=residue 28. | MGYP001229854048::NEARER_CENTER::06 | MNKEDLKEHNYNMYFKSSWKFANNFLLYENILNEYNTLKNNIINEYYTENKHYGYNNLDAYRYAIKRLRFSFRLKNKKKELDDAYINKNNSLINYDKYFNIYNN | B | train |
[
13,
101
] | fold_pilot_v1:seq:MGYP001229854048 | [
"A",
"B"
] | B | [
248045,
8678,
198,
15666,
279,
12465,
3296,
13,
3301,
1132,
279,
2904,
2306,
13,
248046,
198,
248045,
846,
198,
1289,
36972,
8240,
25,
198,
53327,
42,
1425,
43,
3281,
39,
22336,
45,
18579,
26132,
1178,
54,
62811,
11662,
37,
3950,
56,
... | {
"signed_projection": -5.5442676544000005,
"source_structure_id": "MGYP001229854048"
} | openfold_spatial_bridge_v2.2-independent | fold_pilot_v1:seq:MGYP001044118038 | MLDDRSINEFLTKAVEESIEEILKPVVDRSVTIALITTKELVLKDFAYDSDCDRISEASQHIIQSLAGSLALVTCREPLRLQMNNFVLKALS | train::fold_pilot_v1:seq:MGYP001229854048 | LOCAL_FRAME_DIRECTION | A | Does amino acid T occur an even number of times? A=Yes; B=No. | MGYP001229854048 | In residue 14's CA-to-C local axis, is residue 102 on the positive side? A=positive; B=negative. | MGYP001229854048::LOCAL_FRAME_DIRECTION::07 | MNKEDLKEHNYNMYFKSSWKFANNFLLYENILNEYNTLKNNIINEYYTENKHYGYNNLDAYRYAIKRLRFSFRLKNKKKELDDAYINKNNSLINYDKYFNIYNN | A | train |
[
34,
35,
36,
37
] | fold_pilot_v1:seq:MGYP001229854048 | [
"A",
"B"
] | A | [
248045,
8678,
198,
15666,
279,
12465,
3296,
13,
3301,
1132,
279,
2904,
2306,
13,
248046,
198,
248045,
846,
198,
1289,
36972,
8240,
25,
198,
53327,
42,
1425,
43,
3281,
39,
22336,
45,
18579,
26132,
1178,
54,
62811,
11662,
37,
3950,
56,
... | {
"signed_volume": 42.9360084534,
"source_structure_id": "MGYP001229854048"
} | openfold_spatial_bridge_v2.2-independent | fold_pilot_v1:seq:MGYP001044118038 | MLDDRSINEFLTKAVEESIEEILKPVVDRSVTIALITTKELVLKDFAYDSDCDRISEASQHIIQSLAGSLALVTCREPLRLQMNNFVLKALS | train::fold_pilot_v1:seq:MGYP001229854048 | CA_CHIRALITY | A | Is the residue at position 99 in the set AILMFWVY? A=Yes; B=No. | MGYP001229854048 | What is the signed CA chirality of residues 35-38? A=positive; B=negative. | MGYP001229854048::CA_CHIRALITY::08 | MNKEDLKEHNYNMYFKSSWKFANNFLLYENILNEYNTLKNNIINEYYTENKHYGYNNLDAYRYAIKRLRFSFRLKNKKKELDDAYINKNNSLINYDKYFNIYNN | B | train |
[] | fold_pilot_v1:seq:MGYP001229854048 | [
"A",
"B",
"C",
"D",
"E",
"F",
"G",
"H",
"I",
"J",
"K",
"L",
"M",
"N",
"O",
"P",
"Q",
"R",
"S",
"T",
"U",
"V",
"W",
"X",
"Y",
"Z",
"a",
"b",
"c",
"d",
"e",
"f"
] | C | [
248045,
8678,
198,
15666,
279,
12465,
3296,
13,
3301,
1132,
279,
2904,
2306,
13,
248046,
198,
248045,
846,
198,
1289,
36972,
8240,
25,
198,
53327,
42,
1425,
43,
3281,
39,
22336,
45,
18579,
26132,
1178,
54,
62811,
11662,
37,
3950,
56,
... | {
"candidate_ids": [
"fold_pilot_v1:seq_msa:MGYP000989448351",
"fold_pilot_v1:seq_msa_tpl:MGYP000974231573",
"fold_pilot_v1:seq:MGYP001229854048",
"fold_pilot_v1:seq_msa_tpl:MGYP000079000705",
"fold_pilot_v1:seq:MGYP000996047101",
"fold_pilot_v1:seq_msa:MGYP001433029800",
"fold_pilot_v1:se... | openfold_spatial_bridge_v2.2-independent | fold_pilot_v1:seq:MGYP001044118038 | MLDDRSINEFLTKAVEESIEEILKPVVDRSVTIALITTKELVLKDFAYDSDCDRISEASQHIIQSLAGSLALVTCREPLRLQMNNFVLKALS | train::fold_pilot_v1:seq:MGYP001229854048 | RETRIEVAL_32 | B | Which residue letter is alphabetically earlier? A=position 52 (H); B=position 4 (E). | MGYP001229854048 | Which candidate contact fingerprint matches the sequence?
A: n=156 rg=16.1 ss=0 contacts=4-21,1-27,5-31,5-31,4-31,5-31,5-19,3-22
B: n=120 rg=25.8 ss=0 contacts=2-29,4-28,3-29,1-30,3-28,1-30,5-27,4-28
C: n=104 rg=22.2 ss=0 contacts=6-27,7-26,4-29,5-28,14-19,14-19,8-25,14-18
D: n=129 rg=19.3 ss=0 contacts=7-13,7-12,7-13,... | MGYP001229854048::RETRIEVAL_32::09 | MNKEDLKEHNYNMYFKSSWKFANNFLLYENILNEYNTLKNNIINEYYTENKHYGYNNLDAYRYAIKRLRFSFRLKNKKKELDDAYINKNNSLINYDKYFNIYNN | Z | train |
[
13,
74,
97
] | fold_pilot_v1:seq:MGYP001229854048 | [
"A",
"B",
"C"
] | B | [
248045,
8678,
198,
15666,
279,
12465,
3296,
13,
3301,
1132,
279,
2904,
2306,
13,
248046,
198,
248045,
846,
198,
1289,
36972,
8240,
25,
198,
53327,
42,
1425,
43,
3281,
39,
22336,
45,
18579,
26132,
1178,
54,
62811,
11662,
37,
3950,
56,
... | {
"distance_a": 35.186504364,
"distance_b": 4.72757864,
"source_structure_id": "MGYP001229854048"
} | openfold_spatial_bridge_v2.2-independent | fold_pilot_v1:seq:MGYP001044118038 | MLDDRSINEFLTKAVEESIEEILKPVVDRSVTIALITTKELVLKDFAYDSDCDRISEASQHIIQSLAGSLALVTCREPLRLQMNNFVLKALS | train::fold_pilot_v1:seq:MGYP001229854048 | MULTI_CONSTRAINT | A | Does amino acid Y occur an even number of times? A=Yes; B=No. | MGYP001229854048 | Which option is both closer to residue 14 and within 8 angstroms? A=residue 75; B=residue 98; C=neither. | MGYP001229854048::MULTI_CONSTRAINT::10 | MNKEDLKEHNYNMYFKSSWKFANNFLLYENILNEYNTLKNNIINEYYTENKHYGYNNLDAYRYAIKRLRFSFRLKNKKKELDDAYINKNNSLINYDKYFNIYNN | B | train |
[
5,
38
] | fold_pilot_v1:seq:MGYP001229854048 | [
"A",
"B"
] | B | [
248045,
8678,
198,
15666,
279,
12465,
3296,
13,
3301,
1132,
279,
2904,
2306,
13,
248046,
198,
248045,
846,
198,
1289,
36972,
8240,
25,
198,
53327,
42,
1425,
43,
3281,
39,
22336,
45,
18579,
26132,
1178,
54,
62811,
11662,
37,
3950,
56,
... | {
"distance": 48.3114891052,
"source_structure_id": "MGYP001229854048",
"threshold": 8
} | openfold_spatial_bridge_v2.2-independent | fold_pilot_v1:seq:MGYP001044118038 | MLDDRSINEFLTKAVEESIEEILKPVVDRSVTIALITTKELVLKDFAYDSDCDRISEASQHIIQSLAGSLALVTCREPLRLQMNNFVLKALS | train::fold_pilot_v1:seq:MGYP001229854048 | CONTACT_ANY | A | Is the residue at position 22 in the set AILMFWVY? A=Yes; B=No. | MGYP001229854048 | Are residues 6 and 39 within 8 angstroms? A=Yes; B=No. | MGYP001229854048::CONTACT_ANY::11 | MNKEDLKEHNYNMYFKSSWKFANNFLLYENILNEYNTLKNNIINEYYTENKHYGYNNLDAYRYAIKRLRFSFRLKNKKKELDDAYINKNNSLINYDKYFNIYNN | A | train |
[
97,
107
] | fold_pilot_v1:seq_msa_tpl:MGYP000421524611 | [
"A",
"B"
] | A | [
248045,
8678,
198,
15666,
279,
12465,
3296,
13,
3301,
1132,
279,
2904,
2306,
13,
248046,
198,
248045,
846,
198,
1289,
36972,
8240,
25,
198,
42673,
56,
922,
1113,
11755,
78179,
905,
1828,
54,
16651,
53327,
4780,
236161,
887,
56,
9097,
82... | {
"distance": 5.948949337,
"source_structure_id": "MGYP000421524611",
"threshold": 8
} | openfold_spatial_bridge_v2.2-independent | fold_pilot_v1:seq:MGYP000005761700 | MVQYLFRKPKYPILIETDGRVMGARSAERIDRLCKQSSFTAKQTYIVIDSIGEGWSFSPDHNVISPLAMHKRWTKAKIIELFNASLDQTQSDAHYKSGSLSSKRLEKIVREIVEHESKL | train::fold_pilot_v1:seq_msa_tpl:MGYP000421524611 | CONTACT_SHORT | A | Which residue letter is alphabetically earlier? A=position 41 (K); B=position 88 (S). | MGYP000421524611 | Are residues 98 and 108 within 8 angstroms? A=Yes; B=No. | MGYP000421524611::CONTACT_SHORT::00 | MKYITDEEIFKIARPIWKNMNASSNQIDYEGFSRDFSNELKKIITKDRFEAQCKKHKILTSLIADAEPIACIRRKEGIGVIFRQLSSSQEGEFMGNLIISLENGKAEVLDATIY | A | train |
[
45,
65
] | fold_pilot_v1:seq_msa_tpl:MGYP000421524611 | [
"A",
"B"
] | B | [
248045,
8678,
198,
15666,
279,
12465,
3296,
13,
3301,
1132,
279,
2904,
2306,
13,
248046,
198,
248045,
846,
198,
1289,
36972,
8240,
25,
198,
42673,
56,
922,
1113,
11755,
78179,
905,
1828,
54,
16651,
53327,
4780,
236161,
887,
56,
9097,
82... | {
"distance": 24.0335178375,
"source_structure_id": "MGYP000421524611",
"threshold": 8
} | openfold_spatial_bridge_v2.2-independent | fold_pilot_v1:seq:MGYP000005761700 | MVQYLFRKPKYPILIETDGRVMGARSAERIDRLCKQSSFTAKQTYIVIDSIGEGWSFSPDHNVISPLAMHKRWTKAKIIELFNASLDQTQSDAHYKSGSLSSKRLEKIVREIVEHESKL | train::fold_pilot_v1:seq_msa_tpl:MGYP000421524611 | CONTACT_MEDIUM | A | Does amino acid N occur an even number of times? A=Yes; B=No. | MGYP000421524611 | Are residues 46 and 66 within 8 angstroms? A=Yes; B=No. | MGYP000421524611::CONTACT_MEDIUM::01 | MKYITDEEIFKIARPIWKNMNASSNQIDYEGFSRDFSNELKKIITKDRFEAQCKKHKILTSLIADAEPIACIRRKEGIGVIFRQLSSSQEGEFMGNLIISLENGKAEVLDATIY | B | train |
[
12,
96
] | fold_pilot_v1:seq_msa_tpl:MGYP000421524611 | [
"A",
"B"
] | A | [
248045,
8678,
198,
15666,
279,
12465,
3296,
13,
3301,
1132,
279,
2904,
2306,
13,
248046,
198,
248045,
846,
198,
1289,
36972,
8240,
25,
198,
42673,
56,
922,
1113,
11755,
78179,
905,
1828,
54,
16651,
53327,
4780,
236161,
887,
56,
9097,
82... | {
"distance": 7.6642026901,
"source_structure_id": "MGYP000421524611",
"threshold": 8
} | openfold_spatial_bridge_v2.2-independent | fold_pilot_v1:seq:MGYP000005761700 | MVQYLFRKPKYPILIETDGRVMGARSAERIDRLCKQSSFTAKQTYIVIDSIGEGWSFSPDHNVISPLAMHKRWTKAKIIELFNASLDQTQSDAHYKSGSLSSKRLEKIVREIVEHESKL | train::fold_pilot_v1:seq_msa_tpl:MGYP000421524611 | CONTACT_LONG | A | Is the residue at position 36 in the set AILMFWVY? A=Yes; B=No. | MGYP000421524611 | Are residues 13 and 97 within 8 angstroms? A=Yes; B=No. | MGYP000421524611::CONTACT_LONG::02 | MKYITDEEIFKIARPIWKNMNASSNQIDYEGFSRDFSNELKKIITKDRFEAQCKKHKILTSLIADAEPIACIRRKEGIGVIFRQLSSSQEGEFMGNLIISLENGKAEVLDATIY | B | train |
[
84,
92,
59,
72
] | fold_pilot_v1:seq_msa_tpl:MGYP000421524611 | [
"A",
"B"
] | A | [
248045,
8678,
198,
15666,
279,
12465,
3296,
13,
3301,
1132,
279,
2904,
2306,
13,
248046,
198,
248045,
846,
198,
1289,
36972,
8240,
25,
198,
42673,
56,
922,
1113,
11755,
78179,
905,
1828,
54,
16651,
53327,
4780,
236161,
887,
56,
9097,
82... | {
"distance_a": 6.1073722839,
"distance_b": 28.7043552399,
"source_structure_id": "MGYP000421524611"
} | openfold_spatial_bridge_v2.2-independent | fold_pilot_v1:seq:MGYP000005761700 | MVQYLFRKPKYPILIETDGRVMGARSAERIDRLCKQSSFTAKQTYIVIDSIGEGWSFSPDHNVISPLAMHKRWTKAKIIELFNASLDQTQSDAHYKSGSLSSKRLEKIVREIVEHESKL | train::fold_pilot_v1:seq_msa_tpl:MGYP000421524611 | DISTANCE_ORDER_1 | A | Which residue letter is alphabetically earlier? A=position 56 (H); B=position 1 (M). | MGYP000421524611 | Which pair is closer in the target fold? A=(85,93); B=(60,73). | MGYP000421524611::DISTANCE_ORDER_1::03 | MKYITDEEIFKIARPIWKNMNASSNQIDYEGFSRDFSNELKKIITKDRFEAQCKKHKILTSLIADAEPIACIRRKEGIGVIFRQLSSSQEGEFMGNLIISLENGKAEVLDATIY | B | train |
[
37,
108,
41,
66
] | fold_pilot_v1:seq_msa_tpl:MGYP000421524611 | [
"A",
"B"
] | A | [
248045,
8678,
198,
15666,
279,
12465,
3296,
13,
3301,
1132,
279,
2904,
2306,
13,
248046,
198,
248045,
846,
198,
1289,
36972,
8240,
25,
198,
42673,
56,
922,
1113,
11755,
78179,
905,
1828,
54,
16651,
53327,
4780,
236161,
887,
56,
9097,
82... | {
"distance_a": 8.7504291534,
"distance_b": 28.4966678619,
"source_structure_id": "MGYP000421524611"
} | openfold_spatial_bridge_v2.2-independent | fold_pilot_v1:seq:MGYP000005761700 | MVQYLFRKPKYPILIETDGRVMGARSAERIDRLCKQSSFTAKQTYIVIDSIGEGWSFSPDHNVISPLAMHKRWTKAKIIELFNASLDQTQSDAHYKSGSLSSKRLEKIVREIVEHESKL | train::fold_pilot_v1:seq_msa_tpl:MGYP000421524611 | DISTANCE_ORDER_2 | B | Does amino acid K occur an even number of times? A=Yes; B=No. | MGYP000421524611 | Which pair is closer in the target fold? A=(38,109); B=(42,67). | MGYP000421524611::DISTANCE_ORDER_2::04 | MKYITDEEIFKIARPIWKNMNASSNQIDYEGFSRDFSNELKKIITKDRFEAQCKKHKILTSLIADAEPIACIRRKEGIGVIFRQLSSSQEGEFMGNLIISLENGKAEVLDATIY | A | train |
[
18,
21,
67,
70
] | fold_pilot_v1:seq_msa_tpl:MGYP000421524611 | [
"A",
"B",
"C"
] | B | [
248045,
8678,
198,
15666,
279,
12465,
3296,
13,
3301,
1132,
279,
2904,
2306,
13,
248046,
198,
248045,
846,
198,
1289,
36972,
8240,
25,
198,
42673,
56,
922,
1113,
11755,
78179,
905,
1828,
54,
16651,
53327,
4780,
236161,
887,
56,
9097,
82... | {
"cosine": -0.7694442272,
"source_structure_id": "MGYP000421524611"
} | openfold_spatial_bridge_v2.2-independent | fold_pilot_v1:seq:MGYP000005761700 | MVQYLFRKPKYPILIETDGRVMGARSAERIDRLCKQSSFTAKQTYIVIDSIGEGWSFSPDHNVISPLAMHKRWTKAKIIELFNASLDQTQSDAHYKSGSLSSKRLEKIVREIVEHESKL | train::fold_pilot_v1:seq_msa_tpl:MGYP000421524611 | SEGMENT_ORIENTATION | B | Is the residue at position 90 in the set AILMFWVY? A=Yes; B=No. | MGYP000421524611 | How are segments 19-22 and 68-71 oriented? A=parallel; B=antiparallel; C=orthogonal-like. | MGYP000421524611::SEGMENT_ORIENTATION::05 | MKYITDEEIFKIARPIWKNMNASSNQIDYEGFSRDFSNELKKIITKDRFEAQCKKHKILTSLIADAEPIACIRRKEGIGVIFRQLSSSQEGEFMGNLIISLENGKAEVLDATIY | A | train |
[
16,
2
] | fold_pilot_v1:seq_msa_tpl:MGYP000421524611 | [
"A",
"B"
] | A | [
248045,
8678,
198,
15666,
279,
12465,
3296,
13,
3301,
1132,
279,
2904,
2306,
13,
248046,
198,
248045,
846,
198,
1289,
36972,
8240,
25,
198,
42673,
56,
922,
1113,
11755,
78179,
905,
1828,
54,
16651,
53327,
4780,
236161,
887,
56,
9097,
82... | {
"radius_a": 4.3298783302,
"radius_b": 22.2917404175,
"source_structure_id": "MGYP000421524611"
} | openfold_spatial_bridge_v2.2-independent | fold_pilot_v1:seq:MGYP000005761700 | MVQYLFRKPKYPILIETDGRVMGARSAERIDRLCKQSSFTAKQTYIVIDSIGEGWSFSPDHNVISPLAMHKRWTKAKIIELFNASLDQTQSDAHYKSGSLSSKRLEKIVREIVEHESKL | train::fold_pilot_v1:seq_msa_tpl:MGYP000421524611 | NEARER_CENTER | B | Which residue letter is alphabetically earlier? A=position 68 (P); B=position 82 (F). | MGYP000421524611 | Which residue is nearer the fold center? A=residue 17; B=residue 3. | MGYP000421524611::NEARER_CENTER::06 | MKYITDEEIFKIARPIWKNMNASSNQIDYEGFSRDFSNELKKIITKDRFEAQCKKHKILTSLIADAEPIACIRRKEGIGVIFRQLSSSQEGEFMGNLIISLENGKAEVLDATIY | A | train |
[
68,
48
] | fold_pilot_v1:seq_msa_tpl:MGYP000421524611 | [
"A",
"B"
] | B | [
248045,
8678,
198,
15666,
279,
12465,
3296,
13,
3301,
1132,
279,
2904,
2306,
13,
248046,
198,
248045,
846,
198,
1289,
36972,
8240,
25,
198,
42673,
56,
922,
1113,
11755,
78179,
905,
1828,
54,
16651,
53327,
4780,
236161,
887,
56,
9097,
82... | {
"signed_projection": -10.4313964844,
"source_structure_id": "MGYP000421524611"
} | openfold_spatial_bridge_v2.2-independent | fold_pilot_v1:seq:MGYP000005761700 | MVQYLFRKPKYPILIETDGRVMGARSAERIDRLCKQSSFTAKQTYIVIDSIGEGWSFSPDHNVISPLAMHKRWTKAKIIELFNASLDQTQSDAHYKSGSLSSKRLEKIVREIVEHESKL | train::fold_pilot_v1:seq_msa_tpl:MGYP000421524611 | LOCAL_FRAME_DIRECTION | A | Does amino acid I occur an even number of times? A=Yes; B=No. | MGYP000421524611 | In residue 69's CA-to-C local axis, is residue 49 on the positive side? A=positive; B=negative. | MGYP000421524611::LOCAL_FRAME_DIRECTION::07 | MKYITDEEIFKIARPIWKNMNASSNQIDYEGFSRDFSNELKKIITKDRFEAQCKKHKILTSLIADAEPIACIRRKEGIGVIFRQLSSSQEGEFMGNLIISLENGKAEVLDATIY | A | train |
[
5,
6,
7,
8
] | fold_pilot_v1:seq_msa_tpl:MGYP000421524611 | [
"A",
"B"
] | A | [
248045,
8678,
198,
15666,
279,
12465,
3296,
13,
3301,
1132,
279,
2904,
2306,
13,
248046,
198,
248045,
846,
198,
1289,
36972,
8240,
25,
198,
42673,
56,
922,
1113,
11755,
78179,
905,
1828,
54,
16651,
53327,
4780,
236161,
887,
56,
9097,
82... | {
"signed_volume": 41.1930084229,
"source_structure_id": "MGYP000421524611"
} | openfold_spatial_bridge_v2.2-independent | fold_pilot_v1:seq:MGYP000005761700 | MVQYLFRKPKYPILIETDGRVMGARSAERIDRLCKQSSFTAKQTYIVIDSIGEGWSFSPDHNVISPLAMHKRWTKAKIIELFNASLDQTQSDAHYKSGSLSSKRLEKIVREIVEHESKL | train::fold_pilot_v1:seq_msa_tpl:MGYP000421524611 | CA_CHIRALITY | A | Is the residue at position 44 in the set AILMFWVY? A=Yes; B=No. | MGYP000421524611 | What is the signed CA chirality of residues 6-9? A=positive; B=negative. | MGYP000421524611::CA_CHIRALITY::08 | MKYITDEEIFKIARPIWKNMNASSNQIDYEGFSRDFSNELKKIITKDRFEAQCKKHKILTSLIADAEPIACIRRKEGIGVIFRQLSSSQEGEFMGNLIISLENGKAEVLDATIY | B | train |
[] | fold_pilot_v1:seq_msa_tpl:MGYP000421524611 | [
"A",
"B",
"C",
"D",
"E",
"F",
"G",
"H",
"I",
"J",
"K",
"L",
"M",
"N",
"O",
"P",
"Q",
"R",
"S",
"T",
"U",
"V",
"W",
"X",
"Y",
"Z",
"a",
"b",
"c",
"d",
"e",
"f"
] | P | [
248045,
8678,
198,
15666,
279,
12465,
3296,
13,
3301,
1132,
279,
2904,
2306,
13,
248046,
198,
248045,
846,
198,
1289,
36972,
8240,
25,
198,
42673,
56,
922,
1113,
11755,
78179,
905,
1828,
54,
16651,
53327,
4780,
236161,
887,
56,
9097,
82... | {
"candidate_ids": [
"fold_pilot_v1:seq_msa_tpl:MGYP000032175010",
"fold_pilot_v1:seq_msa_tpl:MGYP001303387446",
"fold_pilot_v1:seq_msa_tpl:MGYP000031073165",
"fold_pilot_v1:seq:MGYP000005761700",
"fold_pilot_v1:seq_msa:MGYP000666652511",
"fold_pilot_v1:seq_msa:MGYP000397712803",
"fold_pil... | openfold_spatial_bridge_v2.2-independent | fold_pilot_v1:seq:MGYP000005761700 | MVQYLFRKPKYPILIETDGRVMGARSAERIDRLCKQSSFTAKQTYIVIDSIGEGWSFSPDHNVISPLAMHKRWTKAKIIELFNASLDQTQSDAHYKSGSLSSKRLEKIVREIVEHESKL | train::fold_pilot_v1:seq_msa_tpl:MGYP000421524611 | RETRIEVAL_32 | A | Which residue letter is alphabetically earlier? A=position 27 (I); B=position 54 (K). | MGYP000421524611 | Which candidate contact fingerprint matches the sequence?
A: n=124 rg=15.4 ss=0 contacts=11-25,11-18,12-24,24-27,3-13,12-18,14-24,12-18
B: n=131 rg=14.9 ss=0 contacts=7-14,19-25,15-20,1-7,20-26,7-14,8-15,2-8
C: n=110 rg=13.4 ss=0 contacts=9-14,12-18,17-22,13-17,13-17,16-22,20-26,9-13
D: n=119 rg=13.4 ss=0 contacts=3-6,... | MGYP000421524611::RETRIEVAL_32::09 | MKYITDEEIFKIARPIWKNMNASSNQIDYEGFSRDFSNELKKIITKDRFEAQCKKHKILTSLIADAEPIACIRRKEGIGVIFRQLSSSQEGEFMGNLIISLENGKAEVLDATIY | G | train |
[
52,
85,
77
] | fold_pilot_v1:seq_msa_tpl:MGYP000421524611 | [
"A",
"B",
"C"
] | C | [
248045,
8678,
198,
15666,
279,
12465,
3296,
13,
3301,
1132,
279,
2904,
2306,
13,
248046,
198,
248045,
846,
198,
1289,
36972,
8240,
25,
198,
42673,
56,
922,
1113,
11755,
78179,
905,
1828,
54,
16651,
53327,
4780,
236161,
887,
56,
9097,
82... | {
"distance_a": 13.8195514679,
"distance_b": 25.3023738861,
"source_structure_id": "MGYP000421524611"
} | openfold_spatial_bridge_v2.2-independent | fold_pilot_v1:seq:MGYP000005761700 | MVQYLFRKPKYPILIETDGRVMGARSAERIDRLCKQSSFTAKQTYIVIDSIGEGWSFSPDHNVISPLAMHKRWTKAKIIELFNASLDQTQSDAHYKSGSLSSKRLEKIVREIVEHESKL | train::fold_pilot_v1:seq_msa_tpl:MGYP000421524611 | MULTI_CONSTRAINT | A | Does amino acid A occur an even number of times? A=Yes; B=No. | MGYP000421524611 | Which option is both closer to residue 53 and within 8 angstroms? A=residue 86; B=residue 78; C=neither. | MGYP000421524611::MULTI_CONSTRAINT::10 | MKYITDEEIFKIARPIWKNMNASSNQIDYEGFSRDFSNELKKIITKDRFEAQCKKHKILTSLIADAEPIACIRRKEGIGVIFRQLSSSQEGEFMGNLIISLENGKAEVLDATIY | C | train |
[
58,
67
] | fold_pilot_v1:seq_msa_tpl:MGYP000421524611 | [
"A",
"B"
] | B | [
248045,
8678,
198,
15666,
279,
12465,
3296,
13,
3301,
1132,
279,
2904,
2306,
13,
248046,
198,
248045,
846,
198,
1289,
36972,
8240,
25,
198,
42673,
56,
922,
1113,
11755,
78179,
905,
1828,
54,
16651,
53327,
4780,
236161,
887,
56,
9097,
82... | {
"distance": 17.8493690491,
"source_structure_id": "MGYP000421524611",
"threshold": 8
} | openfold_spatial_bridge_v2.2-independent | fold_pilot_v1:seq:MGYP000005761700 | MVQYLFRKPKYPILIETDGRVMGARSAERIDRLCKQSSFTAKQTYIVIDSIGEGWSFSPDHNVISPLAMHKRWTKAKIIELFNASLDQTQSDAHYKSGSLSSKRLEKIVREIVEHESKL | train::fold_pilot_v1:seq_msa_tpl:MGYP000421524611 | CONTACT_ANY | A | Is the residue at position 64 in the set AILMFWVY? A=Yes; B=No. | MGYP000421524611 | Are residues 59 and 68 within 8 angstroms? A=Yes; B=No. | MGYP000421524611::CONTACT_ANY::11 | MKYITDEEIFKIARPIWKNMNASSNQIDYEGFSRDFSNELKKIITKDRFEAQCKKHKILTSLIADAEPIACIRRKEGIGVIFRQLSSSQEGEFMGNLIISLENGKAEVLDATIY | B | train |
[
47,
53
] | fold_pilot_v1:seq_msa:MGYP001321722315 | [
"A",
"B"
] | A | [
248045,
8678,
198,
15666,
279,
12465,
3296,
13,
3301,
1132,
279,
2904,
2306,
13,
248046,
198,
248045,
846,
198,
1289,
36972,
8240,
25,
198,
42673,
21414,
17756,
7839,
35474,
4164,
1679,
9481,
4180,
38,
42,
7503,
53,
2366,
53,
12207,
167... | {
"distance": 7.8472929001,
"source_structure_id": "MGYP001321722315",
"threshold": 8
} | openfold_spatial_bridge_v2.2-independent | fold_pilot_v1:seq_msa_tpl:MGYP000986645274 | MVKKYGKNWKTIATHMGTKTGKQIRERYINTLDDMIKKEPWSQAEDFKLIELYARLGSKWTEIGKELPGRPENRIKNRFHSYIVKNYNVFVKGEKINEVEFTL | train::fold_pilot_v1:seq_msa:MGYP001321722315 | CONTACT_SHORT | B | Which residue letter is alphabetically earlier? A=position 53 (S); B=position 5 (D). | MGYP001321722315 | Are residues 48 and 54 within 8 angstroms? A=Yes; B=No. | MGYP001321722315::CONTACT_SHORT::00 | MKTYDKAVRDRIPEMIERSGKTCVTEVLPPEELERKRNEKLREEVEEYLESRSIEELADLVEVVYGILEMRNISLEQFEELRLAKKKERGGFSQRICLRSVSD | B | train |
[
40,
62
] | fold_pilot_v1:seq_msa:MGYP001321722315 | [
"A",
"B"
] | A | [
248045,
8678,
198,
15666,
279,
12465,
3296,
13,
3301,
1132,
279,
2904,
2306,
13,
248046,
198,
248045,
846,
198,
1289,
36972,
8240,
25,
198,
42673,
21414,
17756,
7839,
35474,
4164,
1679,
9481,
4180,
38,
42,
7503,
53,
2366,
53,
12207,
167... | {
"distance": 6.0999999046,
"source_structure_id": "MGYP001321722315",
"threshold": 8
} | openfold_spatial_bridge_v2.2-independent | fold_pilot_v1:seq_msa_tpl:MGYP000986645274 | MVKKYGKNWKTIATHMGTKTGKQIRERYINTLDDMIKKEPWSQAEDFKLIELYARLGSKWTEIGKELPGRPENRIKNRFHSYIVKNYNVFVKGEKINEVEFTL | train::fold_pilot_v1:seq_msa:MGYP001321722315 | CONTACT_MEDIUM | A | Does amino acid E occur an even number of times? A=Yes; B=No. | MGYP001321722315 | Are residues 41 and 63 within 8 angstroms? A=Yes; B=No. | MGYP001321722315::CONTACT_MEDIUM::01 | MKTYDKAVRDRIPEMIERSGKTCVTEVLPPEELERKRNEKLREEVEEYLESRSIEELADLVEVVYGILEMRNISLEQFEELRLAKKKERGGFSQRICLRSVSD | A | train |
[
33,
69
] | fold_pilot_v1:seq_msa:MGYP001321722315 | [
"A",
"B"
] | A | [
248045,
8678,
198,
15666,
279,
12465,
3296,
13,
3301,
1132,
279,
2904,
2306,
13,
248046,
198,
248045,
846,
198,
1289,
36972,
8240,
25,
198,
42673,
21414,
17756,
7839,
35474,
4164,
1679,
9481,
4180,
38,
42,
7503,
53,
2366,
53,
12207,
167... | {
"distance": 7.6459140778,
"source_structure_id": "MGYP001321722315",
"threshold": 8
} | openfold_spatial_bridge_v2.2-independent | fold_pilot_v1:seq_msa_tpl:MGYP000986645274 | MVKKYGKNWKTIATHMGTKTGKQIRERYINTLDDMIKKEPWSQAEDFKLIELYARLGSKWTEIGKELPGRPENRIKNRFHSYIVKNYNVFVKGEKINEVEFTL | train::fold_pilot_v1:seq_msa:MGYP001321722315 | CONTACT_LONG | B | Is the residue at position 29 in the set AILMFWVY? A=Yes; B=No. | MGYP001321722315 | Are residues 34 and 70 within 8 angstroms? A=Yes; B=No. | MGYP001321722315::CONTACT_LONG::02 | MKTYDKAVRDRIPEMIERSGKTCVTEVLPPEELERKRNEKLREEVEEYLESRSIEELADLVEVVYGILEMRNISLEQFEELRLAKKKERGGFSQRICLRSVSD | B | train |
[
6,
25,
79,
98
] | fold_pilot_v1:seq_msa:MGYP001321722315 | [
"A",
"B"
] | A | [
248045,
8678,
198,
15666,
279,
12465,
3296,
13,
3301,
1132,
279,
2904,
2306,
13,
248046,
198,
248045,
846,
198,
1289,
36972,
8240,
25,
198,
42673,
21414,
17756,
7839,
35474,
4164,
1679,
9481,
4180,
38,
42,
7503,
53,
2366,
53,
12207,
167... | {
"distance_a": 9.7103042603,
"distance_b": 29.8687133789,
"source_structure_id": "MGYP001321722315"
} | openfold_spatial_bridge_v2.2-independent | fold_pilot_v1:seq_msa_tpl:MGYP000986645274 | MVKKYGKNWKTIATHMGTKTGKQIRERYINTLDDMIKKEPWSQAEDFKLIELYARLGSKWTEIGKELPGRPENRIKNRFHSYIVKNYNVFVKGEKINEVEFTL | train::fold_pilot_v1:seq_msa:MGYP001321722315 | DISTANCE_ORDER_1 | A | Which residue letter is alphabetically earlier? A=position 17 (E); B=position 68 (L). | MGYP001321722315 | Which pair is closer in the target fold? A=(7,26); B=(80,99). | MGYP001321722315::DISTANCE_ORDER_1::03 | MKTYDKAVRDRIPEMIERSGKTCVTEVLPPEELERKRNEKLREEVEEYLESRSIEELADLVEVVYGILEMRNISLEQFEELRLAKKKERGGFSQRICLRSVSD | B | train |
[
23,
89,
5,
59
] | fold_pilot_v1:seq_msa:MGYP001321722315 | [
"A",
"B"
] | B | [
248045,
8678,
198,
15666,
279,
12465,
3296,
13,
3301,
1132,
279,
2904,
2306,
13,
248046,
198,
248045,
846,
198,
1289,
36972,
8240,
25,
198,
42673,
21414,
17756,
7839,
35474,
4164,
1679,
9481,
4180,
38,
42,
7503,
53,
2366,
53,
12207,
167... | {
"distance_a": 46.3976287842,
"distance_b": 14.4270572662,
"source_structure_id": "MGYP001321722315"
} | openfold_spatial_bridge_v2.2-independent | fold_pilot_v1:seq_msa_tpl:MGYP000986645274 | MVKKYGKNWKTIATHMGTKTGKQIRERYINTLDDMIKKEPWSQAEDFKLIELYARLGSKWTEIGKELPGRPENRIKNRFHSYIVKNYNVFVKGEKINEVEFTL | train::fold_pilot_v1:seq_msa:MGYP001321722315 | DISTANCE_ORDER_2 | B | Does amino acid Y occur an even number of times? A=Yes; B=No. | MGYP001321722315 | Which pair is closer in the target fold? A=(24,90); B=(6,60). | MGYP001321722315::DISTANCE_ORDER_2::04 | MKTYDKAVRDRIPEMIERSGKTCVTEVLPPEELERKRNEKLREEVEEYLESRSIEELADLVEVVYGILEMRNISLEQFEELRLAKKKERGGFSQRICLRSVSD | A | train |
[
48,
51,
64,
67
] | fold_pilot_v1:seq_msa:MGYP001321722315 | [
"A",
"B",
"C"
] | B | [
248045,
8678,
198,
15666,
279,
12465,
3296,
13,
3301,
1132,
279,
2904,
2306,
13,
248046,
198,
248045,
846,
198,
1289,
36972,
8240,
25,
198,
42673,
21414,
17756,
7839,
35474,
4164,
1679,
9481,
4180,
38,
42,
7503,
53,
2366,
53,
12207,
167... | {
"cosine": -0.7986620665,
"source_structure_id": "MGYP001321722315"
} | openfold_spatial_bridge_v2.2-independent | fold_pilot_v1:seq_msa_tpl:MGYP000986645274 | MVKKYGKNWKTIATHMGTKTGKQIRERYINTLDDMIKKEPWSQAEDFKLIELYARLGSKWTEIGKELPGRPENRIKNRFHSYIVKNYNVFVKGEKINEVEFTL | train::fold_pilot_v1:seq_msa:MGYP001321722315 | SEGMENT_ORIENTATION | B | Is the residue at position 25 in the set AILMFWVY? A=Yes; B=No. | MGYP001321722315 | How are segments 49-52 and 65-68 oriented? A=parallel; B=antiparallel; C=orthogonal-like. | MGYP001321722315::SEGMENT_ORIENTATION::05 | MKTYDKAVRDRIPEMIERSGKTCVTEVLPPEELERKRNEKLREEVEEYLESRSIEELADLVEVVYGILEMRNISLEQFEELRLAKKKERGGFSQRICLRSVSD | A | train |
[
102,
62
] | fold_pilot_v1:seq_msa:MGYP001321722315 | [
"A",
"B"
] | B | [
248045,
8678,
198,
15666,
279,
12465,
3296,
13,
3301,
1132,
279,
2904,
2306,
13,
248046,
198,
248045,
846,
198,
1289,
36972,
8240,
25,
198,
42673,
21414,
17756,
7839,
35474,
4164,
1679,
9481,
4180,
38,
42,
7503,
53,
2366,
53,
12207,
167... | {
"radius_a": 36.7788314819,
"radius_b": 2.7285654545,
"source_structure_id": "MGYP001321722315"
} | openfold_spatial_bridge_v2.2-independent | fold_pilot_v1:seq_msa_tpl:MGYP000986645274 | MVKKYGKNWKTIATHMGTKTGKQIRERYINTLDDMIKKEPWSQAEDFKLIELYARLGSKWTEIGKELPGRPENRIKNRFHSYIVKNYNVFVKGEKINEVEFTL | train::fold_pilot_v1:seq_msa:MGYP001321722315 | NEARER_CENTER | B | Which residue letter is alphabetically earlier? A=position 49 (L); B=position 86 (K). | MGYP001321722315 | Which residue is nearer the fold center? A=residue 103; B=residue 63. | MGYP001321722315::NEARER_CENTER::06 | MKTYDKAVRDRIPEMIERSGKTCVTEVLPPEELERKRNEKLREEVEEYLESRSIEELADLVEVVYGILEMRNISLEQFEELRLAKKKERGGFSQRICLRSVSD | B | train |
[
81,
16
] | fold_pilot_v1:seq_msa:MGYP001321722315 | [
"A",
"B"
] | B | [
248045,
8678,
198,
15666,
279,
12465,
3296,
13,
3301,
1132,
279,
2904,
2306,
13,
248046,
198,
248045,
846,
198,
1289,
36972,
8240,
25,
198,
42673,
21414,
17756,
7839,
35474,
4164,
1679,
9481,
4180,
38,
42,
7503,
53,
2366,
53,
12207,
167... | {
"signed_projection": -28.8493041992,
"source_structure_id": "MGYP001321722315"
} | openfold_spatial_bridge_v2.2-independent | fold_pilot_v1:seq_msa_tpl:MGYP000986645274 | MVKKYGKNWKTIATHMGTKTGKQIRERYINTLDDMIKKEPWSQAEDFKLIELYARLGSKWTEIGKELPGRPENRIKNRFHSYIVKNYNVFVKGEKINEVEFTL | train::fold_pilot_v1:seq_msa:MGYP001321722315 | LOCAL_FRAME_DIRECTION | B | Does amino acid L occur an even number of times? A=Yes; B=No. | MGYP001321722315 | In residue 82's CA-to-C local axis, is residue 17 on the positive side? A=positive; B=negative. | MGYP001321722315::LOCAL_FRAME_DIRECTION::07 | MKTYDKAVRDRIPEMIERSGKTCVTEVLPPEELERKRNEKLREEVEEYLESRSIEELADLVEVVYGILEMRNISLEQFEELRLAKKKERGGFSQRICLRSVSD | A | train |
[
78,
79,
80,
81
] | fold_pilot_v1:seq_msa:MGYP001321722315 | [
"A",
"B"
] | A | [
248045,
8678,
198,
15666,
279,
12465,
3296,
13,
3301,
1132,
279,
2904,
2306,
13,
248046,
198,
248045,
846,
198,
1289,
36972,
8240,
25,
198,
42673,
21414,
17756,
7839,
35474,
4164,
1679,
9481,
4180,
38,
42,
7503,
53,
2366,
53,
12207,
167... | {
"signed_volume": 40.1560058594,
"source_structure_id": "MGYP001321722315"
} | openfold_spatial_bridge_v2.2-independent | fold_pilot_v1:seq_msa_tpl:MGYP000986645274 | MVKKYGKNWKTIATHMGTKTGKQIRERYINTLDDMIKKEPWSQAEDFKLIELYARLGSKWTEIGKELPGRPENRIKNRFHSYIVKNYNVFVKGEKINEVEFTL | train::fold_pilot_v1:seq_msa:MGYP001321722315 | CA_CHIRALITY | A | Is the residue at position 28 in the set AILMFWVY? A=Yes; B=No. | MGYP001321722315 | What is the signed CA chirality of residues 79-82? A=positive; B=negative. | MGYP001321722315::CA_CHIRALITY::08 | MKTYDKAVRDRIPEMIERSGKTCVTEVLPPEELERKRNEKLREEVEEYLESRSIEELADLVEVVYGILEMRNISLEQFEELRLAKKKERGGFSQRICLRSVSD | B | train |
[] | fold_pilot_v1:seq_msa:MGYP001321722315 | [
"A",
"B",
"C",
"D",
"E",
"F",
"G",
"H",
"I",
"J",
"K",
"L",
"M",
"N",
"O",
"P",
"Q",
"R",
"S",
"T",
"U",
"V",
"W",
"X",
"Y",
"Z",
"a",
"b",
"c",
"d",
"e",
"f"
] | e | [
248045,
8678,
198,
15666,
279,
12465,
3296,
13,
3301,
1132,
279,
2904,
2306,
13,
248046,
198,
248045,
846,
198,
1289,
36972,
8240,
25,
198,
42673,
21414,
17756,
7839,
35474,
4164,
1679,
9481,
4180,
38,
42,
7503,
53,
2366,
53,
12207,
167... | {
"candidate_ids": [
"fold_pilot_v1:seq_msa:MGYP000954265963",
"fold_pilot_v1:seq_msa_tpl:MGYP000937999938",
"fold_pilot_v1:seq:MGYP000623756273",
"fold_pilot_v1:seq_msa_tpl:MGYP000995746223",
"fold_pilot_v1:seq_msa_tpl:MGYP001494481065",
"fold_pilot_v1:seq_msa:MGYP001196479270",
"fold_pil... | openfold_spatial_bridge_v2.2-independent | fold_pilot_v1:seq_msa_tpl:MGYP000986645274 | MVKKYGKNWKTIATHMGTKTGKQIRERYINTLDDMIKKEPWSQAEDFKLIELYARLGSKWTEIGKELPGRPENRIKNRFHSYIVKNYNVFVKGEKINEVEFTL | train::fold_pilot_v1:seq_msa:MGYP001321722315 | RETRIEVAL_32 | B | Which residue letter is alphabetically earlier? A=position 38 (N); B=position 70 (M). | MGYP001321722315 | Which candidate contact fingerprint matches the sequence?
A: n=118 rg=15.7 ss=0 contacts=11-23,19-24,20-23,7-16,11-23,11-23,19-23,19-23
B: n=101 rg=21.0 ss=0 contacts=8-20,9-20,9-20,8-21,8-20,9-20,9-20,8-20
C: n=136 rg=18.6 ss=0 contacts=13-17,21-24,13-17,14-17,14-17,14-17,21-24,12-27
D: n=151 rg=22.8 ss=0 contacts=6-1... | MGYP001321722315::RETRIEVAL_32::09 | MKTYDKAVRDRIPEMIERSGKTCVTEVLPPEELERKRNEKLREEVEEYLESRSIEELADLVEVVYGILEMRNISLEQFEELRLAKKKERGGFSQRICLRSVSD | Q | train |
[
24,
12,
76
] | fold_pilot_v1:seq_msa:MGYP001321722315 | [
"A",
"B",
"C"
] | A | [
248045,
8678,
198,
15666,
279,
12465,
3296,
13,
3301,
1132,
279,
2904,
2306,
13,
248046,
198,
248045,
846,
198,
1289,
36972,
8240,
25,
198,
42673,
21414,
17756,
7839,
35474,
4164,
1679,
9481,
4180,
38,
42,
7503,
53,
2366,
53,
12207,
167... | {
"distance_a": 7.40675354,
"distance_b": 32.5851211548,
"source_structure_id": "MGYP001321722315"
} | openfold_spatial_bridge_v2.2-independent | fold_pilot_v1:seq_msa_tpl:MGYP000986645274 | MVKKYGKNWKTIATHMGTKTGKQIRERYINTLDDMIKKEPWSQAEDFKLIELYARLGSKWTEIGKELPGRPENRIKNRFHSYIVKNYNVFVKGEKINEVEFTL | train::fold_pilot_v1:seq_msa:MGYP001321722315 | MULTI_CONSTRAINT | A | Does amino acid N occur an even number of times? A=Yes; B=No. | MGYP001321722315 | Which option is both closer to residue 25 and within 8 angstroms? A=residue 13; B=residue 77; C=neither. | MGYP001321722315::MULTI_CONSTRAINT::10 | MKTYDKAVRDRIPEMIERSGKTCVTEVLPPEELERKRNEKLREEVEEYLESRSIEELADLVEVVYGILEMRNISLEQFEELRLAKKKERGGFSQRICLRSVSD | C | train |
[
36,
66
] | fold_pilot_v1:seq_msa:MGYP001321722315 | [
"A",
"B"
] | A | [
248045,
8678,
198,
15666,
279,
12465,
3296,
13,
3301,
1132,
279,
2904,
2306,
13,
248046,
198,
248045,
846,
198,
1289,
36972,
8240,
25,
198,
42673,
21414,
17756,
7839,
35474,
4164,
1679,
9481,
4180,
38,
42,
7503,
53,
2366,
53,
12207,
167... | {
"distance": 6.6241979599,
"source_structure_id": "MGYP001321722315",
"threshold": 8
} | openfold_spatial_bridge_v2.2-independent | fold_pilot_v1:seq_msa_tpl:MGYP000986645274 | MVKKYGKNWKTIATHMGTKTGKQIRERYINTLDDMIKKEPWSQAEDFKLIELYARLGSKWTEIGKELPGRPENRIKNRFHSYIVKNYNVFVKGEKINEVEFTL | train::fold_pilot_v1:seq_msa:MGYP001321722315 | CONTACT_ANY | A | Is the residue at position 24 in the set AILMFWVY? A=Yes; B=No. | MGYP001321722315 | Are residues 37 and 67 within 8 angstroms? A=Yes; B=No. | MGYP001321722315::CONTACT_ANY::11 | MKTYDKAVRDRIPEMIERSGKTCVTEVLPPEELERKRNEKLREEVEEYLESRSIEELADLVEVVYGILEMRNISLEQFEELRLAKKKERGGFSQRICLRSVSD | B | train |
[
14,
20
] | fold_pilot_v1:seq_msa:MGYP001335254943 | [
"A",
"B"
] | A | [
248045,
8678,
198,
15666,
279,
12465,
3296,
13,
3301,
1132,
279,
2904,
2306,
13,
248046,
198,
248045,
846,
198,
1289,
36972,
8240,
25,
198,
44,
2366,
3281,
42,
2581,
1825,
47555,
52396,
39500,
1679,
43,
7227,
40,
17904,
7537,
16651,
106... | {
"distance": 7.2000002861,
"source_structure_id": "MGYP001335254943",
"threshold": 8
} | openfold_spatial_bridge_v2.2-independent | fold_pilot_v1:seq_msa:MGYP000067247790 | MKLMTPLLYMGYHLYADNFYTSVTLFKDLFAQGVPATGTVLESRRDFRTNLKNSKRWAERKVRGTMRWERDPFCLVLQWLDNRIVSLLATIDNANVKKQVTRKVKNGELDLQPV | train::fold_pilot_v1:seq_msa:MGYP001335254943 | CONTACT_SHORT | A | Which residue letter is alphabetically earlier? A=position 28 (K); B=position 7 (M). | MGYP001335254943 | Are residues 15 and 21 within 8 angstroms? A=Yes; B=No. | MGYP001335254943::CONTACT_SHORT::00 | MTEKEKMLAGELYDWGDPELMEIWTSGKNLMQRFNSLSYSQREQQMEILDELLGERGENTQITAPFYIDYGKFIGNNVTIGAGSVVTKSIPDNVLAYGSPCRVVREI | B | train |
[
68,
84
] | fold_pilot_v1:seq_msa:MGYP001335254943 | [
"A",
"B"
] | A | [
248045,
8678,
198,
15666,
279,
12465,
3296,
13,
3301,
1132,
279,
2904,
2306,
13,
248046,
198,
248045,
846,
198,
1289,
36972,
8240,
25,
198,
44,
2366,
3281,
42,
2581,
1825,
47555,
52396,
39500,
1679,
43,
7227,
40,
17904,
7537,
16651,
106... | {
"distance": 7.9113845825,
"source_structure_id": "MGYP001335254943",
"threshold": 8
} | openfold_spatial_bridge_v2.2-independent | fold_pilot_v1:seq_msa:MGYP000067247790 | MKLMTPLLYMGYHLYADNFYTSVTLFKDLFAQGVPATGTVLESRRDFRTNLKNSKRWAERKVRGTMRWERDPFCLVLQWLDNRIVSLLATIDNANVKKQVTRKVKNGELDLQPV | train::fold_pilot_v1:seq_msa:MGYP001335254943 | CONTACT_MEDIUM | A | Does amino acid I occur an even number of times? A=Yes; B=No. | MGYP001335254943 | Are residues 69 and 85 within 8 angstroms? A=Yes; B=No. | MGYP001335254943::CONTACT_MEDIUM::01 | MTEKEKMLAGELYDWGDPELMEIWTSGKNLMQRFNSLSYSQREQQMEILDELLGERGENTQITAPFYIDYGKFIGNNVTIGAGSVVTKSIPDNVLAYGSPCRVVREI | B | train |
[
34,
64
] | fold_pilot_v1:seq_msa:MGYP001335254943 | [
"A",
"B"
] | A | [
248045,
8678,
198,
15666,
279,
12465,
3296,
13,
3301,
1132,
279,
2904,
2306,
13,
248046,
198,
248045,
846,
198,
1289,
36972,
8240,
25,
198,
44,
2366,
3281,
42,
2581,
1825,
47555,
52396,
39500,
1679,
43,
7227,
40,
17904,
7537,
16651,
106... | {
"distance": 5.0089917183,
"source_structure_id": "MGYP001335254943",
"threshold": 8
} | openfold_spatial_bridge_v2.2-independent | fold_pilot_v1:seq_msa:MGYP000067247790 | MKLMTPLLYMGYHLYADNFYTSVTLFKDLFAQGVPATGTVLESRRDFRTNLKNSKRWAERKVRGTMRWERDPFCLVLQWLDNRIVSLLATIDNANVKKQVTRKVKNGELDLQPV | train::fold_pilot_v1:seq_msa:MGYP001335254943 | CONTACT_LONG | A | Is the residue at position 34 in the set AILMFWVY? A=Yes; B=No. | MGYP001335254943 | Are residues 35 and 65 within 8 angstroms? A=Yes; B=No. | MGYP001335254943::CONTACT_LONG::02 | MTEKEKMLAGELYDWGDPELMEIWTSGKNLMQRFNSLSYSQREQQMEILDELLGERGENTQITAPFYIDYGKFIGNNVTIGAGSVVTKSIPDNVLAYGSPCRVVREI | B | train |
[
14,
35,
59,
75
] | fold_pilot_v1:seq_msa:MGYP001335254943 | [
"A",
"B"
] | B | [
248045,
8678,
198,
15666,
279,
12465,
3296,
13,
3301,
1132,
279,
2904,
2306,
13,
248046,
198,
248045,
846,
198,
1289,
36972,
8240,
25,
198,
44,
2366,
3281,
42,
2581,
1825,
47555,
52396,
39500,
1679,
43,
7227,
40,
17904,
7537,
16651,
106... | {
"distance_a": 26.9820308685,
"distance_b": 6.1846585274,
"source_structure_id": "MGYP001335254943"
} | openfold_spatial_bridge_v2.2-independent | fold_pilot_v1:seq_msa:MGYP000067247790 | MKLMTPLLYMGYHLYADNFYTSVTLFKDLFAQGVPATGTVLESRRDFRTNLKNSKRWAERKVRGTMRWERDPFCLVLQWLDNRIVSLLATIDNANVKKQVTRKVKNGELDLQPV | train::fold_pilot_v1:seq_msa:MGYP001335254943 | DISTANCE_ORDER_1 | B | Which residue letter is alphabetically earlier? A=position 100 (P); B=position 17 (D). | MGYP001335254943 | Which pair is closer in the target fold? A=(15,36); B=(60,76). | MGYP001335254943::DISTANCE_ORDER_1::03 | MTEKEKMLAGELYDWGDPELMEIWTSGKNLMQRFNSLSYSQREQQMEILDELLGERGENTQITAPFYIDYGKFIGNNVTIGAGSVVTKSIPDNVLAYGSPCRVVREI | B | train |
[
10,
104,
26,
68
] | fold_pilot_v1:seq_msa:MGYP001335254943 | [
"A",
"B"
] | B | [
248045,
8678,
198,
15666,
279,
12465,
3296,
13,
3301,
1132,
279,
2904,
2306,
13,
248046,
198,
248045,
846,
198,
1289,
36972,
8240,
25,
198,
44,
2366,
3281,
42,
2581,
1825,
47555,
52396,
39500,
1679,
43,
7227,
40,
17904,
7537,
16651,
106... | {
"distance_a": 33.8255805969,
"distance_b": 8.2437858582,
"source_structure_id": "MGYP001335254943"
} | openfold_spatial_bridge_v2.2-independent | fold_pilot_v1:seq_msa:MGYP000067247790 | MKLMTPLLYMGYHLYADNFYTSVTLFKDLFAQGVPATGTVLESRRDFRTNLKNSKRWAERKVRGTMRWERDPFCLVLQWLDNRIVSLLATIDNANVKKQVTRKVKNGELDLQPV | train::fold_pilot_v1:seq_msa:MGYP001335254943 | DISTANCE_ORDER_2 | B | Does amino acid M occur an even number of times? A=Yes; B=No. | MGYP001335254943 | Which pair is closer in the target fold? A=(11,105); B=(27,69). | MGYP001335254943::DISTANCE_ORDER_2::04 | MTEKEKMLAGELYDWGDPELMEIWTSGKNLMQRFNSLSYSQREQQMEILDELLGERGENTQITAPFYIDYGKFIGNNVTIGAGSVVTKSIPDNVLAYGSPCRVVREI | A | train |
[
7,
10,
44,
47
] | fold_pilot_v1:seq_msa:MGYP001335254943 | [
"A",
"B",
"C"
] | A | [
248045,
8678,
198,
15666,
279,
12465,
3296,
13,
3301,
1132,
279,
2904,
2306,
13,
248046,
198,
248045,
846,
198,
1289,
36972,
8240,
25,
198,
44,
2366,
3281,
42,
2581,
1825,
47555,
52396,
39500,
1679,
43,
7227,
40,
17904,
7537,
16651,
106... | {
"cosine": 0.5507696867,
"source_structure_id": "MGYP001335254943"
} | openfold_spatial_bridge_v2.2-independent | fold_pilot_v1:seq_msa:MGYP000067247790 | MKLMTPLLYMGYHLYADNFYTSVTLFKDLFAQGVPATGTVLESRRDFRTNLKNSKRWAERKVRGTMRWERDPFCLVLQWLDNRIVSLLATIDNANVKKQVTRKVKNGELDLQPV | train::fold_pilot_v1:seq_msa:MGYP001335254943 | SEGMENT_ORIENTATION | B | Is the residue at position 22 in the set AILMFWVY? A=Yes; B=No. | MGYP001335254943 | How are segments 8-11 and 45-48 oriented? A=parallel; B=antiparallel; C=orthogonal-like. | MGYP001335254943::SEGMENT_ORIENTATION::05 | MTEKEKMLAGELYDWGDPELMEIWTSGKNLMQRFNSLSYSQREQQMEILDELLGERGENTQITAPFYIDYGKFIGNNVTIGAGSVVTKSIPDNVLAYGSPCRVVREI | B | train |
[
0,
67
] | fold_pilot_v1:seq_msa:MGYP001335254943 | [
"A",
"B"
] | B | [
248045,
8678,
198,
15666,
279,
12465,
3296,
13,
3301,
1132,
279,
2904,
2306,
13,
248046,
198,
248045,
846,
198,
1289,
36972,
8240,
25,
198,
44,
2366,
3281,
42,
2581,
1825,
47555,
52396,
39500,
1679,
43,
7227,
40,
17904,
7537,
16651,
106... | {
"radius_a": 25.2812538147,
"radius_b": 3.4555859566000002,
"source_structure_id": "MGYP001335254943"
} | openfold_spatial_bridge_v2.2-independent | fold_pilot_v1:seq_msa:MGYP000067247790 | MKLMTPLLYMGYHLYADNFYTSVTLFKDLFAQGVPATGTVLESRRDFRTNLKNSKRWAERKVRGTMRWERDPFCLVLQWLDNRIVSLLATIDNANVKKQVTRKVKNGELDLQPV | train::fold_pilot_v1:seq_msa:MGYP001335254943 | NEARER_CENTER | B | Which residue letter is alphabetically earlier? A=position 61 (Q); B=position 29 (N). | MGYP001335254943 | Which residue is nearer the fold center? A=residue 1; B=residue 68. | MGYP001335254943::NEARER_CENTER::06 | MTEKEKMLAGELYDWGDPELMEIWTSGKNLMQRFNSLSYSQREQQMEILDELLGERGENTQITAPFYIDYGKFIGNNVTIGAGSVVTKSIPDNVLAYGSPCRVVREI | A | train |
[
28,
93
] | fold_pilot_v1:seq_msa:MGYP001335254943 | [
"A",
"B"
] | A | [
248045,
8678,
198,
15666,
279,
12465,
3296,
13,
3301,
1132,
279,
2904,
2306,
13,
248046,
198,
248045,
846,
198,
1289,
36972,
8240,
25,
198,
44,
2366,
3281,
42,
2581,
1825,
47555,
52396,
39500,
1679,
43,
7227,
40,
17904,
7537,
16651,
106... | {
"signed_projection": 19.5931148529,
"source_structure_id": "MGYP001335254943"
} | openfold_spatial_bridge_v2.2-independent | fold_pilot_v1:seq_msa:MGYP000067247790 | MKLMTPLLYMGYHLYADNFYTSVTLFKDLFAQGVPATGTVLESRRDFRTNLKNSKRWAERKVRGTMRWERDPFCLVLQWLDNRIVSLLATIDNANVKKQVTRKVKNGELDLQPV | train::fold_pilot_v1:seq_msa:MGYP001335254943 | LOCAL_FRAME_DIRECTION | A | Does amino acid N occur an even number of times? A=Yes; B=No. | MGYP001335254943 | In residue 29's CA-to-C local axis, is residue 94 on the positive side? A=positive; B=negative. | MGYP001335254943::LOCAL_FRAME_DIRECTION::07 | MTEKEKMLAGELYDWGDPELMEIWTSGKNLMQRFNSLSYSQREQQMEILDELLGERGENTQITAPFYIDYGKFIGNNVTIGAGSVVTKSIPDNVLAYGSPCRVVREI | B | train |
[
9,
10,
11,
12
] | fold_pilot_v1:seq_msa:MGYP001335254943 | [
"A",
"B"
] | B | [
248045,
8678,
198,
15666,
279,
12465,
3296,
13,
3301,
1132,
279,
2904,
2306,
13,
248046,
198,
248045,
846,
198,
1289,
36972,
8240,
25,
198,
44,
2366,
3281,
42,
2581,
1825,
47555,
52396,
39500,
1679,
43,
7227,
40,
17904,
7537,
16651,
106... | {
"signed_volume": -44.9809875488,
"source_structure_id": "MGYP001335254943"
} | openfold_spatial_bridge_v2.2-independent | fold_pilot_v1:seq_msa:MGYP000067247790 | MKLMTPLLYMGYHLYADNFYTSVTLFKDLFAQGVPATGTVLESRRDFRTNLKNSKRWAERKVRGTMRWERDPFCLVLQWLDNRIVSLLATIDNANVKKQVTRKVKNGELDLQPV | train::fold_pilot_v1:seq_msa:MGYP001335254943 | CA_CHIRALITY | B | Is the residue at position 57 in the set AILMFWVY? A=Yes; B=No. | MGYP001335254943 | What is the signed CA chirality of residues 10-13? A=positive; B=negative. | MGYP001335254943::CA_CHIRALITY::08 | MTEKEKMLAGELYDWGDPELMEIWTSGKNLMQRFNSLSYSQREQQMEILDELLGERGENTQITAPFYIDYGKFIGNNVTIGAGSVVTKSIPDNVLAYGSPCRVVREI | B | train |
[] | fold_pilot_v1:seq_msa:MGYP001335254943 | [
"A",
"B",
"C",
"D",
"E",
"F",
"G",
"H",
"I",
"J",
"K",
"L",
"M",
"N",
"O",
"P",
"Q",
"R",
"S",
"T",
"U",
"V",
"W",
"X",
"Y",
"Z",
"a",
"b",
"c",
"d",
"e",
"f"
] | I | [
248045,
8678,
198,
15666,
279,
12465,
3296,
13,
3301,
1132,
279,
2904,
2306,
13,
248046,
198,
248045,
846,
198,
1289,
36972,
8240,
25,
198,
44,
2366,
3281,
42,
2581,
1825,
47555,
52396,
39500,
1679,
43,
7227,
40,
17904,
7537,
16651,
106... | {
"candidate_ids": [
"fold_pilot_v1:seq_msa_tpl:MGYP001421944265",
"fold_pilot_v1:seq_msa:MGYP000434099726",
"fold_pilot_v1:seq:MGYP001258314359",
"fold_pilot_v1:seq_msa_tpl:MGYP001370730481",
"fold_pilot_v1:seq_msa:MGYP000501092859",
"fold_pilot_v1:seq_msa:MGYP001265569385",
"fold_pilot_v... | openfold_spatial_bridge_v2.2-independent | fold_pilot_v1:seq_msa:MGYP000067247790 | MKLMTPLLYMGYHLYADNFYTSVTLFKDLFAQGVPATGTVLESRRDFRTNLKNSKRWAERKVRGTMRWERDPFCLVLQWLDNRIVSLLATIDNANVKKQVTRKVKNGELDLQPV | train::fold_pilot_v1:seq_msa:MGYP001335254943 | RETRIEVAL_32 | A | Which residue letter is alphabetically earlier? A=position 81 (G); B=position 6 (K). | MGYP001335254943 | Which candidate contact fingerprint matches the sequence?
A: n=123 rg=16.5 ss=1 contacts=5-14,12-22,7-11,14-18,7-11,5-14,18-25,13-19
B: n=106 rg=14.0 ss=0 contacts=9-18,6-12,10-14,15-24,6-11,7-11,14-22,15-23
C: n=134 rg=14.9 ss=1 contacts=20-23,1-20,14-21,15-24,0-6,11-14,23-28,23-27
D: n=107 rg=17.3 ss=0 contacts=9-24,... | MGYP001335254943::RETRIEVAL_32::09 | MTEKEKMLAGELYDWGDPELMEIWTSGKNLMQRFNSLSYSQREQQMEILDELLGERGENTQITAPFYIDYGKFIGNNVTIGAGSVVTKSIPDNVLAYGSPCRVVREI | K | train |
[
76,
57,
53
] | fold_pilot_v1:seq_msa:MGYP001335254943 | [
"A",
"B",
"C"
] | A | [
248045,
8678,
198,
15666,
279,
12465,
3296,
13,
3301,
1132,
279,
2904,
2306,
13,
248046,
198,
248045,
846,
198,
1289,
36972,
8240,
25,
198,
44,
2366,
3281,
42,
2581,
1825,
47555,
52396,
39500,
1679,
43,
7227,
40,
17904,
7537,
16651,
106... | {
"distance_a": 6.2441968918,
"distance_b": 16.7582817078,
"source_structure_id": "MGYP001335254943"
} | openfold_spatial_bridge_v2.2-independent | fold_pilot_v1:seq_msa:MGYP000067247790 | MKLMTPLLYMGYHLYADNFYTSVTLFKDLFAQGVPATGTVLESRRDFRTNLKNSKRWAERKVRGTMRWERDPFCLVLQWLDNRIVSLLATIDNANVKKQVTRKVKNGELDLQPV | train::fold_pilot_v1:seq_msa:MGYP001335254943 | MULTI_CONSTRAINT | A | Does amino acid T occur an even number of times? A=Yes; B=No. | MGYP001335254943 | Which option is both closer to residue 77 and within 8 angstroms? A=residue 58; B=residue 54; C=neither. | MGYP001335254943::MULTI_CONSTRAINT::10 | MTEKEKMLAGELYDWGDPELMEIWTSGKNLMQRFNSLSYSQREQQMEILDELLGERGENTQITAPFYIDYGKFIGNNVTIGAGSVVTKSIPDNVLAYGSPCRVVREI | A | train |
[
84,
98
] | fold_pilot_v1:seq_msa:MGYP001335254943 | [
"A",
"B"
] | A | [
248045,
8678,
198,
15666,
279,
12465,
3296,
13,
3301,
1132,
279,
2904,
2306,
13,
248046,
198,
248045,
846,
198,
1289,
36972,
8240,
25,
198,
44,
2366,
3281,
42,
2581,
1825,
47555,
52396,
39500,
1679,
43,
7227,
40,
17904,
7537,
16651,
106... | {
"distance": 4.9487366676,
"source_structure_id": "MGYP001335254943",
"threshold": 8
} | openfold_spatial_bridge_v2.2-independent | fold_pilot_v1:seq_msa:MGYP000067247790 | MKLMTPLLYMGYHLYADNFYTSVTLFKDLFAQGVPATGTVLESRRDFRTNLKNSKRWAERKVRGTMRWERDPFCLVLQWLDNRIVSLLATIDNANVKKQVTRKVKNGELDLQPV | train::fold_pilot_v1:seq_msa:MGYP001335254943 | CONTACT_ANY | B | Is the residue at position 19 in the set AILMFWVY? A=Yes; B=No. | MGYP001335254943 | Are residues 85 and 99 within 8 angstroms? A=Yes; B=No. | MGYP001335254943::CONTACT_ANY::11 | MTEKEKMLAGELYDWGDPELMEIWTSGKNLMQRFNSLSYSQREQQMEILDELLGERGENTQITAPFYIDYGKFIGNNVTIGAGSVVTKSIPDNVLAYGSPCRVVREI | B | train |
[
14,
22
] | fold_pilot_v1:seq_msa_tpl:MGYP001353946771 | [
"A",
"B"
] | B | [
248045,
8678,
198,
15666,
279,
12465,
3296,
13,
3301,
1132,
279,
2904,
2306,
13,
248046,
198,
248045,
846,
198,
1289,
36972,
8240,
25,
198,
44,
29058,
13097,
42,
24513,
759,
74162,
13082,
37,
2990,
56,
24250,
49,
3950,
42232,
48,
15194,... | {
"distance": 16.6592311859,
"source_structure_id": "MGYP001353946771",
"threshold": 8
} | openfold_spatial_bridge_v2.2-independent | fold_pilot_v1:seq:MGYP001150538235 | MMSLSADNIKLWDVRKPNPVKSYDFAPGFDASALDIDYSATYVAVAGAAVRVLLAKTLEPVTAFEQHKKAVTDVKWTRDSSELASVSLDRNLVIYSA | train::fold_pilot_v1:seq_msa_tpl:MGYP001353946771 | CONTACT_SHORT | A | Which residue letter is alphabetically earlier? A=position 100 (G); B=position 37 (S). | MGYP001353946771 | Are residues 15 and 23 within 8 angstroms? A=Yes; B=No. | MGYP001353946771::CONTACT_SHORT::00 | MNLHLKLENSTTGTLFIVYTINGRLLQTQTVLHRTTSLLILDHEHILHGDENGELTVRDLYDGEIIHSVPLQMPIQGACLVARNTHLLVPLRDGKLIVVGSKIKH | B | train |
[
4,
17
] | fold_pilot_v1:seq_msa_tpl:MGYP001353946771 | [
"A",
"B"
] | A | [
248045,
8678,
198,
15666,
279,
12465,
3296,
13,
3301,
1132,
279,
2904,
2306,
13,
248046,
198,
248045,
846,
198,
1289,
36972,
8240,
25,
198,
44,
29058,
13097,
42,
24513,
759,
74162,
13082,
37,
2990,
56,
24250,
49,
3950,
42232,
48,
15194,... | {
"distance": 4.6368093491,
"source_structure_id": "MGYP001353946771",
"threshold": 8
} | openfold_spatial_bridge_v2.2-independent | fold_pilot_v1:seq:MGYP001150538235 | MMSLSADNIKLWDVRKPNPVKSYDFAPGFDASALDIDYSATYVAVAGAAVRVLLAKTLEPVTAFEQHKKAVTDVKWTRDSSELASVSLDRNLVIYSA | train::fold_pilot_v1:seq_msa_tpl:MGYP001353946771 | CONTACT_MEDIUM | A | Does amino acid Y occur an even number of times? A=Yes; B=No. | MGYP001353946771 | Are residues 5 and 18 within 8 angstroms? A=Yes; B=No. | MGYP001353946771::CONTACT_MEDIUM::01 | MNLHLKLENSTTGTLFIVYTINGRLLQTQTVLHRTTSLLILDHEHILHGDENGELTVRDLYDGEIIHSVPLQMPIQGACLVARNTHLLVPLRDGKLIVVGSKIKH | B | train |
[
16,
48
] | fold_pilot_v1:seq_msa_tpl:MGYP001353946771 | [
"A",
"B"
] | B | [
248045,
8678,
198,
15666,
279,
12465,
3296,
13,
3301,
1132,
279,
2904,
2306,
13,
248046,
198,
248045,
846,
198,
1289,
36972,
8240,
25,
198,
44,
29058,
13097,
42,
24513,
759,
74162,
13082,
37,
2990,
56,
24250,
49,
3950,
42232,
48,
15194,... | {
"distance": 16.0059356689,
"source_structure_id": "MGYP001353946771",
"threshold": 8
} | openfold_spatial_bridge_v2.2-independent | fold_pilot_v1:seq:MGYP001150538235 | MMSLSADNIKLWDVRKPNPVKSYDFAPGFDASALDIDYSATYVAVAGAAVRVLLAKTLEPVTAFEQHKKAVTDVKWTRDSSELASVSLDRNLVIYSA | train::fold_pilot_v1:seq_msa_tpl:MGYP001353946771 | CONTACT_LONG | A | Is the residue at position 88 in the set AILMFWVY? A=Yes; B=No. | MGYP001353946771 | Are residues 17 and 49 within 8 angstroms? A=Yes; B=No. | MGYP001353946771::CONTACT_LONG::02 | MNLHLKLENSTTGTLFIVYTINGRLLQTQTVLHRTTSLLILDHEHILHGDENGELTVRDLYDGEIIHSVPLQMPIQGACLVARNTHLLVPLRDGKLIVVGSKIKH | A | train |
[
88,
95,
23,
36
] | fold_pilot_v1:seq_msa_tpl:MGYP001353946771 | [
"A",
"B"
] | A | [
248045,
8678,
198,
15666,
279,
12465,
3296,
13,
3301,
1132,
279,
2904,
2306,
13,
248046,
198,
248045,
846,
198,
1289,
36972,
8240,
25,
198,
44,
29058,
13097,
42,
24513,
759,
74162,
13082,
37,
2990,
56,
24250,
49,
3950,
42232,
48,
15194,... | {
"distance_a": 5.6089205742,
"distance_b": 24.0952281952,
"source_structure_id": "MGYP001353946771"
} | openfold_spatial_bridge_v2.2-independent | fold_pilot_v1:seq:MGYP001150538235 | MMSLSADNIKLWDVRKPNPVKSYDFAPGFDASALDIDYSATYVAVAGAAVRVLLAKTLEPVTAFEQHKKAVTDVKWTRDSSELASVSLDRNLVIYSA | train::fold_pilot_v1:seq_msa_tpl:MGYP001353946771 | DISTANCE_ORDER_1 | B | Which residue letter is alphabetically earlier? A=position 3 (L); B=position 49 (G). | MGYP001353946771 | Which pair is closer in the target fold? A=(89,96); B=(24,37). | MGYP001353946771::DISTANCE_ORDER_1::03 | MNLHLKLENSTTGTLFIVYTINGRLLQTQTVLHRTTSLLILDHEHILHGDENGELTVRDLYDGEIIHSVPLQMPIQGACLVARNTHLLVPLRDGKLIVVGSKIKH | A | train |
[
24,
88,
27,
60
] | fold_pilot_v1:seq_msa_tpl:MGYP001353946771 | [
"A",
"B"
] | B | [
248045,
8678,
198,
15666,
279,
12465,
3296,
13,
3301,
1132,
279,
2904,
2306,
13,
248046,
198,
248045,
846,
198,
1289,
36972,
8240,
25,
198,
44,
29058,
13097,
42,
24513,
759,
74162,
13082,
37,
2990,
56,
24250,
49,
3950,
42232,
48,
15194,... | {
"distance_a": 30.0418052673,
"distance_b": 9.9649381638,
"source_structure_id": "MGYP001353946771"
} | openfold_spatial_bridge_v2.2-independent | fold_pilot_v1:seq:MGYP001150538235 | MMSLSADNIKLWDVRKPNPVKSYDFAPGFDASALDIDYSATYVAVAGAAVRVLLAKTLEPVTAFEQHKKAVTDVKWTRDSSELASVSLDRNLVIYSA | train::fold_pilot_v1:seq_msa_tpl:MGYP001353946771 | DISTANCE_ORDER_2 | B | Does amino acid L occur an even number of times? A=Yes; B=No. | MGYP001353946771 | Which pair is closer in the target fold? A=(25,89); B=(28,61). | MGYP001353946771::DISTANCE_ORDER_2::04 | MNLHLKLENSTTGTLFIVYTINGRLLQTQTVLHRTTSLLILDHEHILHGDENGELTVRDLYDGEIIHSVPLQMPIQGACLVARNTHLLVPLRDGKLIVVGSKIKH | B | train |
[
92,
95,
50,
53
] | fold_pilot_v1:seq_msa_tpl:MGYP001353946771 | [
"A",
"B",
"C"
] | A | [
248045,
8678,
198,
15666,
279,
12465,
3296,
13,
3301,
1132,
279,
2904,
2306,
13,
248046,
198,
248045,
846,
198,
1289,
36972,
8240,
25,
198,
44,
29058,
13097,
42,
24513,
759,
74162,
13082,
37,
2990,
56,
24250,
49,
3950,
42232,
48,
15194,... | {
"cosine": 0.6187686324,
"source_structure_id": "MGYP001353946771"
} | openfold_spatial_bridge_v2.2-independent | fold_pilot_v1:seq:MGYP001150538235 | MMSLSADNIKLWDVRKPNPVKSYDFAPGFDASALDIDYSATYVAVAGAAVRVLLAKTLEPVTAFEQHKKAVTDVKWTRDSSELASVSLDRNLVIYSA | train::fold_pilot_v1:seq_msa_tpl:MGYP001353946771 | SEGMENT_ORIENTATION | A | Is the residue at position 46 in the set AILMFWVY? A=Yes; B=No. | MGYP001353946771 | How are segments 93-96 and 51-54 oriented? A=parallel; B=antiparallel; C=orthogonal-like. | MGYP001353946771::SEGMENT_ORIENTATION::05 | MNLHLKLENSTTGTLFIVYTINGRLLQTQTVLHRTTSLLILDHEHILHGDENGELTVRDLYDGEIIHSVPLQMPIQGACLVARNTHLLVPLRDGKLIVVGSKIKH | C | train |
[
47,
21
] | fold_pilot_v1:seq_msa_tpl:MGYP001353946771 | [
"A",
"B"
] | A | [
248045,
8678,
198,
15666,
279,
12465,
3296,
13,
3301,
1132,
279,
2904,
2306,
13,
248046,
198,
248045,
846,
198,
1289,
36972,
8240,
25,
198,
44,
29058,
13097,
42,
24513,
759,
74162,
13082,
37,
2990,
56,
24250,
49,
3950,
42232,
48,
15194,... | {
"radius_a": 1.3261076212,
"radius_b": 23.2611179352,
"source_structure_id": "MGYP001353946771"
} | openfold_spatial_bridge_v2.2-independent | fold_pilot_v1:seq:MGYP001150538235 | MMSLSADNIKLWDVRKPNPVKSYDFAPGFDASALDIDYSATYVAVAGAAVRVLLAKTLEPVTAFEQHKKAVTDVKWTRDSSELASVSLDRNLVIYSA | train::fold_pilot_v1:seq_msa_tpl:MGYP001353946771 | NEARER_CENTER | B | Which residue letter is alphabetically earlier? A=position 18 (V); B=position 103 (I). | MGYP001353946771 | Which residue is nearer the fold center? A=residue 48; B=residue 22. | MGYP001353946771::NEARER_CENTER::06 | MNLHLKLENSTTGTLFIVYTINGRLLQTQTVLHRTTSLLILDHEHILHGDENGELTVRDLYDGEIIHSVPLQMPIQGACLVARNTHLLVPLRDGKLIVVGSKIKH | B | train |
[
78,
64
] | fold_pilot_v1:seq_msa_tpl:MGYP001353946771 | [
"A",
"B"
] | A | [
248045,
8678,
198,
15666,
279,
12465,
3296,
13,
3301,
1132,
279,
2904,
2306,
13,
248046,
198,
248045,
846,
198,
1289,
36972,
8240,
25,
198,
44,
29058,
13097,
42,
24513,
759,
74162,
13082,
37,
2990,
56,
24250,
49,
3950,
42232,
48,
15194,... | {
"signed_projection": 3.0984091759,
"source_structure_id": "MGYP001353946771"
} | openfold_spatial_bridge_v2.2-independent | fold_pilot_v1:seq:MGYP001150538235 | MMSLSADNIKLWDVRKPNPVKSYDFAPGFDASALDIDYSATYVAVAGAAVRVLLAKTLEPVTAFEQHKKAVTDVKWTRDSSELASVSLDRNLVIYSA | train::fold_pilot_v1:seq_msa_tpl:MGYP001353946771 | LOCAL_FRAME_DIRECTION | A | Does amino acid T occur an even number of times? A=Yes; B=No. | MGYP001353946771 | In residue 79's CA-to-C local axis, is residue 65 on the positive side? A=positive; B=negative. | MGYP001353946771::LOCAL_FRAME_DIRECTION::07 | MNLHLKLENSTTGTLFIVYTINGRLLQTQTVLHRTTSLLILDHEHILHGDENGELTVRDLYDGEIIHSVPLQMPIQGACLVARNTHLLVPLRDGKLIVVGSKIKH | A | train |
[
90,
91,
92,
93
] | fold_pilot_v1:seq_msa_tpl:MGYP001353946771 | [
"A",
"B"
] | A | [
248045,
8678,
198,
15666,
279,
12465,
3296,
13,
3301,
1132,
279,
2904,
2306,
13,
248046,
198,
248045,
846,
198,
1289,
36972,
8240,
25,
198,
44,
29058,
13097,
42,
24513,
759,
74162,
13082,
37,
2990,
56,
24250,
49,
3950,
42232,
48,
15194,... | {
"signed_volume": 51.8390007019,
"source_structure_id": "MGYP001353946771"
} | openfold_spatial_bridge_v2.2-independent | fold_pilot_v1:seq:MGYP001150538235 | MMSLSADNIKLWDVRKPNPVKSYDFAPGFDASALDIDYSATYVAVAGAAVRVLLAKTLEPVTAFEQHKKAVTDVKWTRDSSELASVSLDRNLVIYSA | train::fold_pilot_v1:seq_msa_tpl:MGYP001353946771 | CA_CHIRALITY | A | Is the residue at position 98 in the set AILMFWVY? A=Yes; B=No. | MGYP001353946771 | What is the signed CA chirality of residues 91-94? A=positive; B=negative. | MGYP001353946771::CA_CHIRALITY::08 | MNLHLKLENSTTGTLFIVYTINGRLLQTQTVLHRTTSLLILDHEHILHGDENGELTVRDLYDGEIIHSVPLQMPIQGACLVARNTHLLVPLRDGKLIVVGSKIKH | A | train |
[] | fold_pilot_v1:seq_msa_tpl:MGYP001353946771 | [
"A",
"B",
"C",
"D",
"E",
"F",
"G",
"H",
"I",
"J",
"K",
"L",
"M",
"N",
"O",
"P",
"Q",
"R",
"S",
"T",
"U",
"V",
"W",
"X",
"Y",
"Z",
"a",
"b",
"c",
"d",
"e",
"f"
] | N | [
248045,
8678,
198,
15666,
279,
12465,
3296,
13,
3301,
1132,
279,
2904,
2306,
13,
248046,
198,
248045,
846,
198,
1289,
36972,
8240,
25,
198,
44,
29058,
13097,
42,
24513,
759,
74162,
13082,
37,
2990,
56,
24250,
49,
3950,
42232,
48,
15194,... | {
"candidate_ids": [
"fold_pilot_v1:seq_msa_tpl:MGYP001257544491",
"fold_pilot_v1:seq_msa_tpl:MGYP000935049386",
"fold_pilot_v1:seq_msa:MGYP000129608607",
"fold_pilot_v1:seq_msa:MGYP001419428306",
"fold_pilot_v1:seq_msa_tpl:MGYP001434400641",
"fold_pilot_v1:seq_msa:MGYP000067247790",
"fold... | openfold_spatial_bridge_v2.2-independent | fold_pilot_v1:seq:MGYP001150538235 | MMSLSADNIKLWDVRKPNPVKSYDFAPGFDASALDIDYSATYVAVAGAAVRVLLAKTLEPVTAFEQHKKAVTDVKWTRDSSELASVSLDRNLVIYSA | train::fold_pilot_v1:seq_msa_tpl:MGYP001353946771 | RETRIEVAL_32 | B | Which residue letter is alphabetically earlier? A=position 5 (L); B=position 13 (G). | MGYP001353946771 | Which candidate contact fingerprint matches the sequence?
A: n=103 rg=13.1 ss=1 contacts=6-14,14-22,16-30,16-29,7-13,8-12,2-7,16-29
B: n=152 rg=15.4 ss=1 contacts=8-11,18-27,8-24,8-23,8-23,19-28,13-26,8-23
C: n=142 rg=14.8 ss=1 contacts=24-28,1-22,4-11,3-12,27-30,3-11,5-23,10-20
D: n=98 rg=14.8 ss=1 contacts=9-25,21-27... | MGYP001353946771::RETRIEVAL_32::09 | MNLHLKLENSTTGTLFIVYTINGRLLQTQTVLHRTTSLLILDHEHILHGDENGELTVRDLYDGEIIHSVPLQMPIQGACLVARNTHLLVPLRDGKLIVVGSKIKH | L | train |
[
34,
47,
59
] | fold_pilot_v1:seq_msa_tpl:MGYP001353946771 | [
"A",
"B",
"C"
] | A | [
248045,
8678,
198,
15666,
279,
12465,
3296,
13,
3301,
1132,
279,
2904,
2306,
13,
248046,
198,
248045,
846,
198,
1289,
36972,
8240,
25,
198,
44,
29058,
13097,
42,
24513,
759,
74162,
13082,
37,
2990,
56,
24250,
49,
3950,
42232,
48,
15194,... | {
"distance_a": 6.6850581169000005,
"distance_b": 15.4547719955,
"source_structure_id": "MGYP001353946771"
} | openfold_spatial_bridge_v2.2-independent | fold_pilot_v1:seq:MGYP001150538235 | MMSLSADNIKLWDVRKPNPVKSYDFAPGFDASALDIDYSATYVAVAGAAVRVLLAKTLEPVTAFEQHKKAVTDVKWTRDSSELASVSLDRNLVIYSA | train::fold_pilot_v1:seq_msa_tpl:MGYP001353946771 | MULTI_CONSTRAINT | A | Does amino acid G occur an even number of times? A=Yes; B=No. | MGYP001353946771 | Which option is both closer to residue 35 and within 8 angstroms? A=residue 48; B=residue 60; C=neither. | MGYP001353946771::MULTI_CONSTRAINT::10 | MNLHLKLENSTTGTLFIVYTINGRLLQTQTVLHRTTSLLILDHEHILHGDENGELTVRDLYDGEIIHSVPLQMPIQGACLVARNTHLLVPLRDGKLIVVGSKIKH | A | train |
[
82,
89
] | fold_pilot_v1:seq_msa_tpl:MGYP001353946771 | [
"A",
"B"
] | B | [
248045,
8678,
198,
15666,
279,
12465,
3296,
13,
3301,
1132,
279,
2904,
2306,
13,
248046,
198,
248045,
846,
198,
1289,
36972,
8240,
25,
198,
44,
29058,
13097,
42,
24513,
759,
74162,
13082,
37,
2990,
56,
24250,
49,
3950,
42232,
48,
15194,... | {
"distance": 19.2927455902,
"source_structure_id": "MGYP001353946771",
"threshold": 8
} | openfold_spatial_bridge_v2.2-independent | fold_pilot_v1:seq:MGYP001150538235 | MMSLSADNIKLWDVRKPNPVKSYDFAPGFDASALDIDYSATYVAVAGAAVRVLLAKTLEPVTAFEQHKKAVTDVKWTRDSSELASVSLDRNLVIYSA | train::fold_pilot_v1:seq_msa_tpl:MGYP001353946771 | CONTACT_ANY | B | Is the residue at position 34 in the set AILMFWVY? A=Yes; B=No. | MGYP001353946771 | Are residues 83 and 90 within 8 angstroms? A=Yes; B=No. | MGYP001353946771::CONTACT_ANY::11 | MNLHLKLENSTTGTLFIVYTINGRLLQTQTVLHRTTSLLILDHEHILHGDENGELTVRDLYDGEIIHSVPLQMPIQGACLVARNTHLLVPLRDGKLIVVGSKIKH | B | train |
[
6,
14
] | fold_pilot_v1:seq_msa_tpl:MGYP000144314505 | [
"A",
"B"
] | B | [
248045,
8678,
198,
15666,
279,
12465,
3296,
13,
3301,
1132,
279,
2904,
2306,
13,
248046,
198,
248045,
846,
198,
1289,
36972,
8240,
25,
198,
4680,
39,
4443,
622,
1679,
8662,
53,
8533,
5449,
48,
2990,
56,
1825,
51,
12452,
44072,
84686,
... | {
"distance": 24.0127029419,
"source_structure_id": "MGYP000144314505",
"threshold": 8
} | openfold_spatial_bridge_v2.2-independent | fold_pilot_v1:seq:MGYP001355040209 | MSERKVMEMKYGRDIIVHLITEGRSRSYKAFLPGGIIYHSEDLEWVLRKIQQFRSA | train::fold_pilot_v1:seq_msa_tpl:MGYP000144314505 | CONTACT_SHORT | A | Which residue letter is alphabetically earlier? A=position 58 (H); B=position 11 (Y). | MGYP000144314505 | Are residues 7 and 15 within 8 angstroms? A=Yes; B=No. | MGYP000144314505::CONTACT_SHORT::00 | MAHSPERPELYVCGDCQIVYAGTVAEHMESGDHVYESPTECEVCGATDFVENSQWPHHHD | A | train |
[
22,
37
] | fold_pilot_v1:seq_msa_tpl:MGYP000144314505 | [
"A",
"B"
] | A | [
248045,
8678,
198,
15666,
279,
12465,
3296,
13,
3301,
1132,
279,
2904,
2306,
13,
248046,
198,
248045,
846,
198,
1289,
36972,
8240,
25,
198,
4680,
39,
4443,
622,
1679,
8662,
53,
8533,
5449,
48,
2990,
56,
1825,
51,
12452,
44072,
84686,
... | {
"distance": 7.2311820984,
"source_structure_id": "MGYP000144314505",
"threshold": 8
} | openfold_spatial_bridge_v2.2-independent | fold_pilot_v1:seq:MGYP001355040209 | MSERKVMEMKYGRDIIVHLITEGRSRSYKAFLPGGIIYHSEDLEWVLRKIQQFRSA | train::fold_pilot_v1:seq_msa_tpl:MGYP000144314505 | CONTACT_MEDIUM | A | Does amino acid S occur an even number of times? A=Yes; B=No. | MGYP000144314505 | Are residues 23 and 38 within 8 angstroms? A=Yes; B=No. | MGYP000144314505::CONTACT_MEDIUM::01 | MAHSPERPELYVCGDCQIVYAGTVAEHMESGDHVYESPTECEVCGATDFVENSQWPHHHD | A | train |
[
3,
45
] | fold_pilot_v1:seq_msa_tpl:MGYP000144314505 | [
"A",
"B"
] | B | [
248045,
8678,
198,
15666,
279,
12465,
3296,
13,
3301,
1132,
279,
2904,
2306,
13,
248046,
198,
248045,
846,
198,
1289,
36972,
8240,
25,
198,
4680,
39,
4443,
622,
1679,
8662,
53,
8533,
5449,
48,
2990,
56,
1825,
51,
12452,
44072,
84686,
... | {
"distance": 32.4913825989,
"source_structure_id": "MGYP000144314505",
"threshold": 8
} | openfold_spatial_bridge_v2.2-independent | fold_pilot_v1:seq:MGYP001355040209 | MSERKVMEMKYGRDIIVHLITEGRSRSYKAFLPGGIIYHSEDLEWVLRKIQQFRSA | train::fold_pilot_v1:seq_msa_tpl:MGYP000144314505 | CONTACT_LONG | B | Is the residue at position 45 in the set AILMFWVY? A=Yes; B=No. | MGYP000144314505 | Are residues 4 and 46 within 8 angstroms? A=Yes; B=No. | MGYP000144314505::CONTACT_LONG::02 | MAHSPERPELYVCGDCQIVYAGTVAEHMESGDHVYESPTECEVCGATDFVENSQWPHHHD | B | train |
[
40,
47,
1,
14
] | fold_pilot_v1:seq_msa_tpl:MGYP000144314505 | [
"A",
"B"
] | A | [
248045,
8678,
198,
15666,
279,
12465,
3296,
13,
3301,
1132,
279,
2904,
2306,
13,
248046,
198,
248045,
846,
198,
1289,
36972,
8240,
25,
198,
4680,
39,
4443,
622,
1679,
8662,
53,
8533,
5449,
48,
2990,
56,
1825,
51,
12452,
44072,
84686,
... | {
"distance_a": 8.2607507706,
"distance_b": 36.9101600647,
"source_structure_id": "MGYP000144314505"
} | openfold_spatial_bridge_v2.2-independent | fold_pilot_v1:seq:MGYP001355040209 | MSERKVMEMKYGRDIIVHLITEGRSRSYKAFLPGGIIYHSEDLEWVLRKIQQFRSA | train::fold_pilot_v1:seq_msa_tpl:MGYP000144314505 | DISTANCE_ORDER_1 | A | Which residue letter is alphabetically earlier? A=position 27 (H); B=position 17 (Q). | MGYP000144314505 | Which pair is closer in the target fold? A=(41,48); B=(2,15). | MGYP000144314505::DISTANCE_ORDER_1::03 | MAHSPERPELYVCGDCQIVYAGTVAEHMESGDHVYESPTECEVCGATDFVENSQWPHHHD | B | train |
[
1,
37,
10,
54
] | fold_pilot_v1:seq_msa_tpl:MGYP000144314505 | [
"A",
"B"
] | B | [
248045,
8678,
198,
15666,
279,
12465,
3296,
13,
3301,
1132,
279,
2904,
2306,
13,
248046,
198,
248045,
846,
198,
1289,
36972,
8240,
25,
198,
4680,
39,
4443,
622,
1679,
8662,
53,
8533,
5449,
48,
2990,
56,
1825,
51,
12452,
44072,
84686,
... | {
"distance_a": 30.4004955292,
"distance_b": 8.5023527145,
"source_structure_id": "MGYP000144314505"
} | openfold_spatial_bridge_v2.2-independent | fold_pilot_v1:seq:MGYP001355040209 | MSERKVMEMKYGRDIIVHLITEGRSRSYKAFLPGGIIYHSEDLEWVLRKIQQFRSA | train::fold_pilot_v1:seq_msa_tpl:MGYP000144314505 | DISTANCE_ORDER_2 | A | Does amino acid Q occur an even number of times? A=Yes; B=No. | MGYP000144314505 | Which pair is closer in the target fold? A=(2,38); B=(11,55). | MGYP000144314505::DISTANCE_ORDER_2::04 | MAHSPERPELYVCGDCQIVYAGTVAEHMESGDHVYESPTECEVCGATDFVENSQWPHHHD | A | train |
[
9,
12,
41,
44
] | fold_pilot_v1:seq_msa_tpl:MGYP000144314505 | [
"A",
"B",
"C"
] | A | [
248045,
8678,
198,
15666,
279,
12465,
3296,
13,
3301,
1132,
279,
2904,
2306,
13,
248046,
198,
248045,
846,
198,
1289,
36972,
8240,
25,
198,
4680,
39,
4443,
622,
1679,
8662,
53,
8533,
5449,
48,
2990,
56,
1825,
51,
12452,
44072,
84686,
... | {
"cosine": 0.7795957923,
"source_structure_id": "MGYP000144314505"
} | openfold_spatial_bridge_v2.2-independent | fold_pilot_v1:seq:MGYP001355040209 | MSERKVMEMKYGRDIIVHLITEGRSRSYKAFLPGGIIYHSEDLEWVLRKIQQFRSA | train::fold_pilot_v1:seq_msa_tpl:MGYP000144314505 | SEGMENT_ORIENTATION | A | Is the residue at position 1 in the set AILMFWVY? A=Yes; B=No. | MGYP000144314505 | How are segments 10-13 and 42-45 oriented? A=parallel; B=antiparallel; C=orthogonal-like. | MGYP000144314505::SEGMENT_ORIENTATION::05 | MAHSPERPELYVCGDCQIVYAGTVAEHMESGDHVYESPTECEVCGATDFVENSQWPHHHD | A | train |
[
10,
1
] | fold_pilot_v1:seq_msa_tpl:MGYP000144314505 | [
"A",
"B"
] | A | [
248045,
8678,
198,
15666,
279,
12465,
3296,
13,
3301,
1132,
279,
2904,
2306,
13,
248046,
198,
248045,
846,
198,
1289,
36972,
8240,
25,
198,
4680,
39,
4443,
622,
1679,
8662,
53,
8533,
5449,
48,
2990,
56,
1825,
51,
12452,
44072,
84686,
... | {
"radius_a": 2.984821558,
"radius_b": 24.601518631,
"source_structure_id": "MGYP000144314505"
} | openfold_spatial_bridge_v2.2-independent | fold_pilot_v1:seq:MGYP001355040209 | MSERKVMEMKYGRDIIVHLITEGRSRSYKAFLPGGIIYHSEDLEWVLRKIQQFRSA | train::fold_pilot_v1:seq_msa_tpl:MGYP000144314505 | NEARER_CENTER | B | Which residue letter is alphabetically earlier? A=position 14 (G); B=position 48 (D). | MGYP000144314505 | Which residue is nearer the fold center? A=residue 11; B=residue 2. | MGYP000144314505::NEARER_CENTER::06 | MAHSPERPELYVCGDCQIVYAGTVAEHMESGDHVYESPTECEVCGATDFVENSQWPHHHD | A | train |
[
14,
33
] | fold_pilot_v1:seq_msa_tpl:MGYP000144314505 | [
"A",
"B"
] | B | [
248045,
8678,
198,
15666,
279,
12465,
3296,
13,
3301,
1132,
279,
2904,
2306,
13,
248046,
198,
248045,
846,
198,
1289,
36972,
8240,
25,
198,
4680,
39,
4443,
622,
1679,
8662,
53,
8533,
5449,
48,
2990,
56,
1825,
51,
12452,
44072,
84686,
... | {
"signed_projection": -5.3719449043,
"source_structure_id": "MGYP000144314505"
} | openfold_spatial_bridge_v2.2-independent | fold_pilot_v1:seq:MGYP001355040209 | MSERKVMEMKYGRDIIVHLITEGRSRSYKAFLPGGIIYHSEDLEWVLRKIQQFRSA | train::fold_pilot_v1:seq_msa_tpl:MGYP000144314505 | LOCAL_FRAME_DIRECTION | A | Does amino acid A occur an even number of times? A=Yes; B=No. | MGYP000144314505 | In residue 15's CA-to-C local axis, is residue 34 on the positive side? A=positive; B=negative. | MGYP000144314505::LOCAL_FRAME_DIRECTION::07 | MAHSPERPELYVCGDCQIVYAGTVAEHMESGDHVYESPTECEVCGATDFVENSQWPHHHD | B | train |
[
13,
14,
15,
16
] | fold_pilot_v1:seq_msa_tpl:MGYP000144314505 | [
"A",
"B"
] | A | [
248045,
8678,
198,
15666,
279,
12465,
3296,
13,
3301,
1132,
279,
2904,
2306,
13,
248046,
198,
248045,
846,
198,
1289,
36972,
8240,
25,
198,
4680,
39,
4443,
622,
1679,
8662,
53,
8533,
5449,
48,
2990,
56,
1825,
51,
12452,
44072,
84686,
... | {
"signed_volume": 18.8000106812,
"source_structure_id": "MGYP000144314505"
} | openfold_spatial_bridge_v2.2-independent | fold_pilot_v1:seq:MGYP001355040209 | MSERKVMEMKYGRDIIVHLITEGRSRSYKAFLPGGIIYHSEDLEWVLRKIQQFRSA | train::fold_pilot_v1:seq_msa_tpl:MGYP000144314505 | CA_CHIRALITY | B | Is the residue at position 52 in the set AILMFWVY? A=Yes; B=No. | MGYP000144314505 | What is the signed CA chirality of residues 14-17? A=positive; B=negative. | MGYP000144314505::CA_CHIRALITY::08 | MAHSPERPELYVCGDCQIVYAGTVAEHMESGDHVYESPTECEVCGATDFVENSQWPHHHD | A | train |
End of preview. Expand in Data Studio
FoldingCorpus
Protein-derived supervised question-answer records for Fold2Reason. The default
configuration contains 12,000 train, 1,200 validation, and 1,200 frozen-test
question records from 1,000 / 100 / 100 proteins. The protein_training
configuration contains the associated BB4Q10 input/target records (1,000 / 100 / 100).
Audit and manifest JSON files are retained under corpus/ but excluded from the
load_dataset split definitions.
from datasets import load_dataset
corpus = load_dataset("GENTEL-Lab/FoldingCorpus")
proteins = load_dataset("GENTEL-Lab/FoldingCorpus", "protein_training")
Paper: https://huggingface.co/papers/2609.38879
Code and reproduction instructions: https://github.com/GENTEL-lab/Fold2Reason
Source: project dataset.zip, SHA-256 97ef38130fec0b7caaa323022d5b7bef620e7b26dfa42a1da4713066806dd90b. The original release files
are unchanged. Exact per-file hashes and source paths are in SOURCE_PROVENANCE.json.
The protein records derive from a selected OpenFold high-confidence distillation
snapshot. The project owner confirmed redistribution for this public release;
the original acquisition record is documented as pending in the project release checklist.
- Downloads last month
- 51
Models trained or fine-tuned on GENTEL-Lab/FoldingCorpus