Emulated-Inc/cell-seg-overlap

Cell segmentation with overlapping cells

Synthetic phase-contrast images of rod-shaped bacteria at the pixel scale of a real recording, rendered with an in-house generator in which cells cross and overlap heavily: cells are allowed to cross others, to run in parallel bundles, and to occlude up to about a third of a crossing cell. Every mask is a single 16-bit label image in which the cell on top wins where two cells overlap.

data/train/images/   20 images, 2056 x 2056, 16-bit
data/train/masks/    their label masks, same filenames
data/test/images/    5 held-out images
data/manifest.json   name, split, size and cell count per sample

The held-out masks and the generator are not published.

Licence

CC BY 4.0. Attribute as "Cell segmentation with overlapping cells, Emulated".