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"/9j/4AAQSkZJRgABAQAAAQABAAD/2wBDAAgGBgcGBQgHBwcJCQgKDBQNDAsLDBkSEw8UHRofHh0aHBwgJC4nICIsIxwcKDcpLDA(...TRUNCATED)
PubTables-1M-test
pubtables1m
41
12
"<fcel>Genbank Accession<fcel>Gene Symbol<fcel>P-value<fcel>FDR<fcel>Fold Change<fcel>Regulation<fce(...TRUNCATED)
"<table><tr><td>Genbank Accession</td><td>Gene Symbol</td><td>P-value</td><td>FDR</td><td>Fold Chang(...TRUNCATED)
737x748
737
748
false
"<fcel>Genbank Accession<fcel>Gene Symbol<fcel>P-value<fcel>FDR<fcel>Fold Change<fcel>Regulation<fce(...TRUNCATED)
false
"/9j/4AAQSkZJRgABAQAAAQABAAD/2wBDAAgGBgcGBQgHBwcJCQgKDBQNDAsLDBkSEw8UHRofHh0aHBwgJC4nICIsIxwcKDcpLDA(...TRUNCATED)
PubTables-1M-test
pubtables1m
22
6
"<fcel>Gene symbol<fcel>Gene name<fcel>Entrez ID<fcel>log2FC<fcel>p-value<fcel>Gene function<nl><fce(...TRUNCATED)
"<table><tr><td>Gene symbol</td><td>Gene name</td><td>Entrez ID</td><td>log2FC</td><td>p-value</td><(...TRUNCATED)
618x722
618
722
false
"<fcel>Gene symbol<fcel>Gene name<fcel>Entrez ID<fcel>log2FC<fcel>p-value<fcel>Gene function<nl><fce(...TRUNCATED)
false
"/9j/4AAQSkZJRgABAQAAAQABAAD/2wBDAAgGBgcGBQgHBwcJCQgKDBQNDAsLDBkSEw8UHRofHh0aHBwgJC4nICIsIxwcKDcpLDA(...TRUNCATED)
PubTables-1M-test
pubtables1m
42
4
"<fcel>Kinetic rate constants<lcel><lcel><lcel><lcel><nl><ecel><fcel>Parameter<fcel>Description of r(...TRUNCATED)
"<table><tr><td colspan=\"5\">Kinetic rate constants</td></tr><tr><td></td><td>Parameter</td><td>Des(...TRUNCATED)
677x743
677
743
false
"<fcel><lcel><lcel><lcel><lcel>Kinetic rate constants<nl><ecel><fcel>Parameter<fcel>Description of r(...TRUNCATED)
true
"/9j/4AAQSkZJRgABAQAAAQABAAD/2wBDAAgGBgcGBQgHBwcJCQgKDBQNDAsLDBkSEw8UHRofHh0aHBwgJC4nICIsIxwcKDcpLDA(...TRUNCATED)
PubTables-1M-test
pubtables1m
35
9
"<fcel>Gene_id<fcel>Annotation<fcel>LF vs. LF5<fcel>LF vs. LF10<fcel>LF vs. LF20<fcel>LF vs. LF30<fc(...TRUNCATED)
"<table><tr><td>Gene_id</td><td>Annotation</td><td>LF vs. LF5</td><td>LF vs. LF10</td><td>LF vs. LF2(...TRUNCATED)
829x533
829
533
false
"<fcel>Gene_id<fcel>Annotation<fcel>LF vs. LF5<fcel>LF vs. LF10<fcel>LF vs. LF20<fcel>LF vs. LF30<fc(...TRUNCATED)
false
"/9j/4AAQSkZJRgABAQAAAQABAAD/2wBDAAgGBgcGBQgHBwcJCQgKDBQNDAsLDBkSEw8UHRofHh0aHBwgJC4nICIsIxwcKDcpLDA(...TRUNCATED)
PubTables-1M-test
pubtables1m
43
7
"<ecel><fcel>U11<fcel>U22<fcel>U33<fcel>U12<fcel>U13<fcel>U23<nl><fcel>S1<fcel>0.0310 (2)<fcel>0.035(...TRUNCATED)
"<table><tr><td></td><td>U11</td><td>U22</td><td>U33</td><td>U12</td><td>U13</td><td>U23</td></tr><t(...TRUNCATED)
588x714
588
714
false
"<ecel><fcel>U11<fcel>U22<fcel>U33<fcel>U12<fcel>U13<fcel>U23<nl><fcel>S1<fcel>0.0310 (2)<fcel>0.035(...TRUNCATED)
false
"/9j/4AAQSkZJRgABAQAAAQABAAD/2wBDAAgGBgcGBQgHBwcJCQgKDBQNDAsLDBkSEw8UHRofHh0aHBwgJC4nICIsIxwcKDcpLDA(...TRUNCATED)
PubTables-1M-test
pubtables1m
37
5
"<fcel>Factors and items<fcel>Mean score [SD]<fcel>Factor loadings on primary factor<fcel>Internal c(...TRUNCATED)
"<table><tr><td>Factors and items</td><td>Mean score [SD]</td><td>Factor loadings on primary factor<(...TRUNCATED)
602x747
602
747
false
"<fcel>Factors and items<fcel>Mean score [SD]<fcel>Factor loadings on primary factor<fcel>Internal c(...TRUNCATED)
false
"/9j/4AAQSkZJRgABAQAAAQABAAD/2wBDAAgGBgcGBQgHBwcJCQgKDBQNDAsLDBkSEw8UHRofHh0aHBwgJC4nICIsIxwcKDcpLDA(...TRUNCATED)
PubTables-1M-test
pubtables1m
42
9
"<ecel><fcel>Before propensity score match<lcel><lcel><lcel><fcel>p value<fcel>After propensity scor(...TRUNCATED)
"<table><tr><td></td><td colspan=\"4\">Before propensity score match</td><td rowspan=\"3\">p value</(...TRUNCATED)
668x672
668
672
false
"<ecel><fcel><lcel><lcel><lcel>Before propensity score match<fcel><ulcel><ulcel>p value<fcel><lcel><(...TRUNCATED)
true
"/9j/4AAQSkZJRgABAQAAAQABAAD/2wBDAAgGBgcGBQgHBwcJCQgKDBQNDAsLDBkSEw8UHRofHh0aHBwgJC4nICIsIxwcKDcpLDA(...TRUNCATED)
PubTables-1M-test
pubtables1m
16
7
"<fcel>Ferret no.<fcel>Clinical outcome<fcel>Respa<fcel>Neurob<fcel>Hemc<fcel>Fever<fcel>Clinical di(...TRUNCATED)
"<table><tr><td>Ferret no.</td><td>Clinical outcome</td><td>Respa</td><td>Neurob</td><td>Hemc</td><t(...TRUNCATED)
640x561
640
561
false
"<fcel>Ferret no.<fcel>Clinical outcome<fcel>Respa<fcel>Neurob<fcel>Hemc<fcel>Fever<fcel>Clinical di(...TRUNCATED)
false
"/9j/4AAQSkZJRgABAQAAAQABAAD/2wBDAAgGBgcGBQgHBwcJCQgKDBQNDAsLDBkSEw8UHRofHh0aHBwgJC4nICIsIxwcKDcpLDA(...TRUNCATED)
PubTables-1M-test
pubtables1m
29
7
"<ecel><fcel>Control Arm, % (n) N = 90<fcel>Intervention Arms<lcel><lcel><lcel><lcel><lcel><fcel>Tot(...TRUNCATED)
"<table><tr><td></td><td rowspan=\"3\">Control Arm, % (n) N = 90</td><td colspan=\"6\">Intervention (...TRUNCATED)
680x492
680
492
false
"<ecel><fcel><ulcel><ulcel>Control Arm, % (n) N = 90<fcel><lcel><lcel><lcel><lcel><lcel>Intervention(...TRUNCATED)
true
"/9j/4AAQSkZJRgABAQAAAQABAAD/2wBDAAgGBgcGBQgHBwcJCQgKDBQNDAsLDBkSEw8UHRofHh0aHBwgJC4nICIsIxwcKDcpLDA(...TRUNCATED)
PubTables-1M-test
pubtables1m
45
5
"<fcel>Gene ID<fcel>GenBank accession No.<fcel>Scaffold GenBank accession No.<fcel>Loc<fcel>EST acce(...TRUNCATED)
"<table><tr><td>Gene ID</td><td>GenBank accession No.</td><td>Scaffold GenBank accession No.</td><td(...TRUNCATED)
590x644
590
644
false
"<fcel>Gene ID<fcel>GenBank accession No.<fcel>Scaffold GenBank accession No.<fcel>Loc<fcel>EST acce(...TRUNCATED)
false
End of preview. Expand in Data Studio

Table Recognition Benchmark — canonical PaddleOCR-VL 1.6 OTSL

17 public and self-built table sources merged into 64 uniformly sized shards (184,074 tables, ~8.6 GB of images). Every row carries an OTSL ground truth in PaddleOCR-VL 1.6's own OTSL convention, the HTML ground truth, and a flag marking the tables that carry no cell text at all.

This is a corrected release. The previous release (CheneyWong/table_recognition_eval) shipped an OTSL column whose rowspan structure did not follow PaddleOCR-VL's own parser, and whose documentation listed a token that does not exist in the 1.6 vocabulary. See What changed — in short, 42.6% of the rows have a different ground truth here.

Layout

shard_0000.parquet ... shard_0063.parquet   # 64 evenly-sized shards
scores_reference_base.parquet                # reference run: PaddleOCR-VL 1.6 (base), per-sample scores
scores_reference_sft_ckpt2800.parquet        # reference run: our SFT ckpt-2800, per-sample scores
README.md                                   # you are here
scripts/otsl_norm.py                        # the canonicaliser (HTML -> 1.6 OTSL)
scripts/canonical_teds.py                   # the scorer used for the reference runs
scripts/README.md                           # how to rebuild / verify

Shards are balanced by total image bytes, not row count — each holds ~169 MB of images, and every shard mixes 15–17 different sources, so a single shard already gives broad coverage.

Schema

column type meaning
bytes binary the table image, as stored (PNG/JPEG)
source string fine-grained original dataset name
benchmark string which of the 17 sources this row came from
sample_id string original sample identifier (may be empty)
rows / cols int64 table grid dimensions
otsl string canonical OTSL ground truth (PaddleOCR-VL 1.6 convention)
html string HTML ground truth
resolution string WIDTHxHEIGHT
width / height int64 image dimensions
structure_only bool true when the table has no cell text at all
otsl_prev string the ground truth of the previous release (kept for reference)
otsl_changed bool true when otsl differs from otsl_prev

What is OTSL

OTSL = Optimized Table Structure Language, the compact token language PaddleOCR uses to represent table structure. A table is a flat token stream — no nesting, no closing tags. The vocabulary is exactly six tokens (this is PaddleOCR-VL 1.6's own tokenizer, PaddleOCR-VL-1.6/tokenizer.json):

token id meaning
<fcel> 101309 a new (filled) cell starts here
<ecel> 101308 an empty cell
<lcel> 101311 continuation to the left (horizontal merge)
<ucel> 101312 continuation above (vertical merge)
<xcel> 101310 continuation both left and above
<nl> 101313 end of row

Cell text is inlined directly after its <fcel>, so the stream alternates structure and content:

<fcel>Year<fcel>Division<ecel><nl>
<fcel>2023<fcel>A<ecel><nl>

A rowspan is a continuation row, not a marker inside the cell:

<fcel>A<fcel>B<lcel><nl>     A spans two rows, B spans two columns
<ucel><fcel>C<fcel>D<nl>     <- the continuation row, <ucel> holds A's column

What changed, and why

The previous release's otsl column was produced by an HTML→OTSL converter that (a) put a rowspan's continuation marker inside the same row using a token <ulcel>, and (b) padded every row with <ecel> up to a fixed column count.

<ulcel> is not a PaddleOCR-VL 1.6 token. It is not in the model's vocabulary, so the model can never emit it; and the usual scorer (canonical_teds.py, used by OmniDocBench-style table evaluation) does not list it among the tokens it recognises either, so it silently ends up inside the cell text:

<fcel><ulcel><ulcel>characteristic   ->   cell text = "<ulcel><ulcel>characteristic"

Rows containing <ulcel> in the previous release:

source rows with <ulcel>
pubtables1m 37%
ccocr 33%
omnidocbench16 25%
pubtabnet_icdar21 23%
tablet 22%
omnidocbench15 20%
ocrbenchv2 17%
scitsr 16%
fintabnet 14%

This release rebuilds the ground truth from the original HTML following PaddleOCR-VL 1.6's own parser (paddlex/inference/pipelines/paddleocr_vl/uilts.py::otsl_parse_texts):

  • a cell starts at <fcel> (with text) or <ecel> (empty);
  • a colspan puts <lcel> in the same row, to the right;
  • a rowspan puts <ucel> in the row(s) below, in the same column;
  • a cell merged both ways is <xcel>;
  • rows are not padded — the row width is the row width.

Where a source's HTML in the previous release was only a shell (all cells empty, the text living in the source annotation), the source annotation is kept instead of the HTML-derived one, so no text is ever lost.

Verification. The canonical OTSL was parsed back with PaddleOCR-VL 1.6's own parser and compared cell by cell (text, rowspan, colspan) against the grid rebuilt from the HTML: 99.77% identical (2,993 / 3,000 samples; the 7 differences are extra empty cells produced by the official parser's internal "pad every row to max_cols" step, not structural errors).

Reference runs

scores_reference_*.parquet hold the per-sample scores of two reference runs against this ground truth, so the numbers below are reproducible:

run model pooled TEDS-S
base PaddleOCR-VL 1.6 (no fine-tuning) see scores_reference_base.parquet
sft_ckpt2800 our SFT (checkpoint-2800) see scores_reference_sft_ckpt2800.parquet

The scorer is scripts/canonical_teds.py (primary metric TEDS-S; note that for pure-structure tables, whose cells are all empty, only TEDS-S is meaningful).

Intended use

Training and evaluating table-structure recognition models on 17 public and self-built table sources. The images are cropped table images; the labels are structure + cell text.

If you use this dataset, please also cite the original sources of the individual tables (the source column names them).

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