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gsm
string
gse
string
published_gse
string
source_pipeline
string
source_release
string
platform
string
technology
string
organism
string
tissue
string
observation_unit
string
n_obs
int64
n_vars
int64
expression_state
string
verification
string
expression_sha256
string
coordinate_units
string
um_basis
string
um_per_unit
float64
has_spatial_um
bool
has_image
bool
image_stain
string
image_stain_basis
string
image_um_per_px
float64
image_registration
string
image_sha256
string
segmentation
string
molecules
string
molecules_use
string
flags
string
qc_flags
string
drop_features
string
review_decision
string
review_category
string
review_notes
string
content_group
string
group_kind
string
aliases
string
split
string
sample_dir
string
GSM3036911
GSE111672
GSE111672
sda-all
sda-all-gap-20261009
ST (legacy)
spatial transcriptomics
Homo sapiens
pancreatic adenocarcinoma
spot
956
25,753
counts
VERIFIED
6a085d7c8141fe5a6e3f1d441371840a969c1a3c70cf5bc202369f2a76671994
native_grid
unresolved
null
false
false
null
GSM3036911
val
samples/GSE111672/GSM3036911
GSM3405534
GSE111672
GSE111672
sda-all
sda-all-gap-20261009
ST (legacy)
spatial transcriptomics
Homo sapiens
pancreatic adenocarcinoma
spot
996
16,528
counts
VERIFIED
7443e9dd3ab4f87ac7c05a2eed77e680e4bc0f33ee9dc0c406e3eef73f4b5fcf
native_grid
unresolved
null
false
false
null
GSM3405534
val
samples/GSE111672/GSM3405534
GSM4100721
GSE111672
GSE111672
sda-all
sda-all-gap-20261009
ST (legacy)
spatial transcriptomics
Homo sapiens
pancreatic adenocarcinoma
spot
316
19,738
counts
VERIFIED
71b1fc876098635073658ec8df3e80f834321f92521686a6ddd3798c69f04d3e
native_grid
unresolved
null
false
false
null
GSM4100721
val
samples/GSE111672/GSM4100721
GSM4100722
GSE111672
GSE111672
sda-all
sda-all-gap-20261009
ST (legacy)
spatial transcriptomics
Homo sapiens
pancreatic adenocarcinoma
spot
288
19,738
counts
VERIFIED
014a9714a8fa1a3b0d32933233390f1da58a1157f4500c2a1d6fe5d0a6334f3f
native_grid
unresolved
null
false
false
null
GSM4100722
val
samples/GSE111672/GSM4100722
GSM4100723
GSE111672
GSE111672
sda-all
sda-all-gap-20261009
ST (legacy)
spatial transcriptomics
Homo sapiens
pancreatic adenocarcinoma
spot
321
19,738
counts
VERIFIED
3d8401d1d7592d59cfea4f7f0cedfb41dcc8c104355537b6bb8d06b5e87de240
native_grid
unresolved
null
false
false
null
GSM4100723
val
samples/GSE111672/GSM4100723
GSM4100724
GSE111672
GSE111672
sda-all
sda-all-gap-20261009
ST (legacy)
spatial transcriptomics
Homo sapiens
pancreatic adenocarcinoma
spot
242
19,738
counts
VERIFIED
078b3719170e08f157bf8c97358bb89afd1dd136b74f10964d06173b356909ff
native_grid
unresolved
null
false
false
null
GSM4100724
val
samples/GSE111672/GSM4100724
GSM4100726
GSE111672
GSE111672
sda-all
sda-all-gap-20261009
ST (legacy)
spatial transcriptomics
Homo sapiens
pancreatic adenocarcinoma
spot
359
19,738
counts
VERIFIED
f8588bf0da196249b5aa7bf92eb760918e946a0db71a9343262b98858444286a
native_grid
unresolved
null
false
false
null
GSM4100726
val
samples/GSE111672/GSM4100726
GSM4100728
GSE111672
GSE111672
sda-all
sda-all-gap-20261009
ST (legacy)
spatial transcriptomics
Homo sapiens
pancreatic adenocarcinoma
spot
288
19,738
counts
VERIFIED
d6c34cea7282ac25340d2096a0e005dd4eebab21f6fae836f5b8c467fcd3b1ca
native_grid
unresolved
null
false
false
null
GSM4100728
val
samples/GSE111672/GSM4100728
GSM3399129
GSE120374
GSE120374
sda-all
sda-all-v1.4.0
ST (legacy)
Spatial Transcriptomics
Mus musculus
spinal cord
spot
52
11,353
counts
VERIFIED
146928dfdb0571a9e0092000cd2a191dfa1fc2102224d26afefb817044889aa6
native_grid
unresolved
null
false
false
null
GSM3399129
train
samples/GSE120374/GSM3399129
GSM3399130
GSE120374
GSE120374
sda-all
sda-all-v1.4.0
ST (legacy)
Spatial Transcriptomics
Mus musculus
spinal cord
spot
62
11,633
counts
VERIFIED
0ef01e3bf4b16f000161fd329347ce64011dd05869ef8018bb50db7271f67a1e
native_grid
unresolved
null
false
false
null
GSM3399130
train
samples/GSE120374/GSM3399130
GSM3399131
GSE120374
GSE120374
sda-all
sda-all-v1.4.0
ST (legacy)
Spatial Transcriptomics
Mus musculus
spinal cord
spot
57
10,784
counts
VERIFIED
35f9c7ece2502112528b098bdc7e6f5c025885d26db742839d64b12c6ab4733e
native_grid
unresolved
null
false
false
null
GSM3399131
train
samples/GSE120374/GSM3399131
GSM3399132
GSE120374
GSE120374
sda-all
sda-all-v1.4.0
ST (legacy)
Spatial Transcriptomics
Mus musculus
spinal cord
spot
54
11,245
counts
VERIFIED
c8e8c762e1ede98526a3e513f606d8d193a654b6fd2db25d468bd2ebee53b34e
native_grid
unresolved
null
false
false
null
GSM3399132
train
samples/GSE120374/GSM3399132
GSM3399133
GSE120374
GSE120374
sda-all
sda-all-v1.4.0
ST (legacy)
Spatial Transcriptomics
Mus musculus
spinal cord
spot
99
13,176
counts
VERIFIED
f699bba36641c5295390b6797514ecfd398323d96b4ab19b4c54fdd993f836fb
native_grid
unresolved
null
false
false
null
GSM3399133
train
samples/GSE120374/GSM3399133
GSM3399134
GSE120374
GSE120374
sda-all
sda-all-v1.4.0
ST (legacy)
Spatial Transcriptomics
Mus musculus
spinal cord
spot
59
11,099
counts
VERIFIED
4e07ba8955965441569572f8ea37f00435bbbe8f72df1ee7487e5a2d446cb49a
native_grid
unresolved
null
false
false
null
GSM3399134
train
samples/GSE120374/GSM3399134
GSM3399135
GSE120374
GSE120374
sda-all
sda-all-v1.4.0
ST (legacy)
Spatial Transcriptomics
Mus musculus
spinal cord
spot
62
11,652
counts
VERIFIED
3b29fd5d36c02d19daba4f00e12b3a78094ee715b01b2ec5ed967800fb55326a
native_grid
unresolved
null
false
false
null
GSM3399135
train
samples/GSE120374/GSM3399135
GSM3399136
GSE120374
GSE120374
sda-all
sda-all-v1.4.0
ST (legacy)
Spatial Transcriptomics
Mus musculus
spinal cord
spot
91
12,391
counts
VERIFIED
6d42d565c997d7cd012866a61833337eb199d63cfeaef442da2e6827606f131d
native_grid
unresolved
null
false
false
null
GSM3399136
train
samples/GSE120374/GSM3399136
GSM3399137
GSE120374
GSE120374
sda-all
sda-all-v1.4.0
ST (legacy)
Spatial Transcriptomics
Mus musculus
spinal cord
spot
97
11,607
counts
VERIFIED
7b17bcd17a2a2e2f0e5e7388f026bebf18fd2cbc3b60cb56db6fe4cf80cded19
native_grid
unresolved
null
false
false
null
GSM3399137
train
samples/GSE120374/GSM3399137
GSM3399138
GSE120374
GSE120374
sda-all
sda-all-v1.4.0
ST (legacy)
Spatial Transcriptomics
Mus musculus
spinal cord
spot
99
13,046
counts
VERIFIED
f2880bff0dd0025bfc3295b413cd30b3ec0d95c38255b57a2c8208bd17d6fb67
native_grid
unresolved
null
false
false
null
GSM3399138
train
samples/GSE120374/GSM3399138
GSM3399139
GSE120374
GSE120374
sda-all
sda-all-v1.4.0
ST (legacy)
Spatial Transcriptomics
Mus musculus
spinal cord
spot
78
12,955
counts
VERIFIED
2b3abd5edb814e56493158a999cd8fb54856685daa397d1cbc69eb78b1869ff0
native_grid
unresolved
null
false
false
null
GSM3399139
train
samples/GSE120374/GSM3399139
GSM3399140
GSE120374
GSE120374
sda-all
sda-all-v1.4.0
ST (legacy)
Spatial Transcriptomics
Mus musculus
spinal cord
spot
81
12,381
counts
VERIFIED
9067d7c66df0e4f1c02590c7656b95ae84683ca61d55984f73e7068b11ead075
native_grid
unresolved
null
false
false
null
GSM3399140
train
samples/GSE120374/GSM3399140
GSM3399141
GSE120374
GSE120374
sda-all
sda-all-v1.4.0
ST (legacy)
Spatial Transcriptomics
Mus musculus
spinal cord
spot
82
11,596
counts
VERIFIED
cc7aab018ac7688532f3f60b398ba0468aa8511a174e7846f2087c560dcd233b
native_grid
unresolved
null
false
false
null
GSM3399141
train
samples/GSE120374/GSM3399141
GSM3399142
GSE120374
GSE120374
sda-all
sda-all-v1.4.0
ST (legacy)
Spatial Transcriptomics
Mus musculus
spinal cord
spot
89
12,460
counts
VERIFIED
17eafdcff5a951eb6981dfd63125fc7c675977a5615c1e224fbd7f7b3889f8bb
native_grid
unresolved
null
false
false
null
GSM3399142
train
samples/GSE120374/GSM3399142
GSM3399143
GSE120374
GSE120374
sda-all
sda-all-v1.4.0
ST (legacy)
Spatial Transcriptomics
Mus musculus
spinal cord
spot
88
12,385
counts
VERIFIED
6289bda88ff83e5422d1e276ec5dac18a8a35aec8a8d377c62c4bf8e70a15cf7
native_grid
unresolved
null
false
false
null
GSM3399143
train
samples/GSE120374/GSM3399143
GSM3399144
GSE120374
GSE120374
sda-all
sda-all-v1.4.0
ST (legacy)
Spatial Transcriptomics
Mus musculus
spinal cord
spot
72
12,038
counts
VERIFIED
a2b4002ef70cfae8ea23345ef0d8a7b48be5f8f282f46344637bf8e7627ff1d8
native_grid
unresolved
null
false
false
null
GSM3399144
train
samples/GSE120374/GSM3399144
GSM3399145
GSE120374
GSE120374
sda-all
sda-all-v1.4.0
ST (legacy)
Spatial Transcriptomics
Mus musculus
spinal cord
spot
86
13,040
counts
VERIFIED
317c4b78ba28d7330badc24643a65bf744c375dca55f105f28377e81bcd16f0f
native_grid
unresolved
null
false
false
null
GSM3399145
train
samples/GSE120374/GSM3399145
GSM3399146
GSE120374
GSE120374
sda-all
sda-all-v1.4.0
ST (legacy)
Spatial Transcriptomics
Mus musculus
spinal cord
spot
87
11,807
counts
VERIFIED
0f0705cde31ecc7db1b412d6982e10d63778ba3e6d4721acb8ed3b0b76685fd9
native_grid
unresolved
null
false
false
null
GSM3399146
train
samples/GSE120374/GSM3399146
GSM3399147
GSE120374
GSE120374
sda-all
sda-all-v1.4.0
ST (legacy)
Spatial Transcriptomics
Mus musculus
spinal cord
spot
82
11,193
counts
VERIFIED
381bb74e1b14f026f39430b4643a3fc674daa58377156cee14ea4b855fb1e58f
native_grid
unresolved
null
false
false
null
GSM3399147
train
samples/GSE120374/GSM3399147
GSM3399148
GSE120374
GSE120374
sda-all
sda-all-v1.4.0
ST (legacy)
Spatial Transcriptomics
Mus musculus
spinal cord
spot
99
12,765
counts
VERIFIED
2dfb3d8758dd5fd72b1eb4d276016d2d667233162b7a3a60a864d55bd908006f
native_grid
unresolved
null
false
false
null
GSM3399148
train
samples/GSE120374/GSM3399148
GSM3399149
GSE120374
GSE120374
sda-all
sda-all-v1.4.0
ST (legacy)
Spatial Transcriptomics
Mus musculus
spinal cord
spot
101
12,631
counts
VERIFIED
aaabcd94e1612c39b9111bdd901ba43c6f9b6fae63f27233d8564209ea91bceb
native_grid
unresolved
null
false
false
null
GSM3399149
train
samples/GSE120374/GSM3399149
GSM3399150
GSE120374
GSE120374
sda-all
sda-all-v1.4.0
ST (legacy)
Spatial Transcriptomics
Mus musculus
spinal cord
spot
138
14,215
counts
VERIFIED
2cb8ca8746f4e633db97be3fdfdb7f4222e232717ab59798e0cdcc8598245579
native_grid
unresolved
null
false
false
null
GSM3399150
train
samples/GSE120374/GSM3399150
GSM3399151
GSE120374
GSE120374
sda-all
sda-all-v1.4.0
ST (legacy)
Spatial Transcriptomics
Mus musculus
spinal cord
spot
112
13,113
counts
VERIFIED
7362bd240fee3a5ee3777d1090b23573ba5f541d8c4ad71cd5f56b99637dc3a9
native_grid
unresolved
null
false
false
null
GSM3399151
train
samples/GSE120374/GSM3399151
GSM3399152
GSE120374
GSE120374
sda-all
sda-all-v1.4.0
ST (legacy)
Spatial Transcriptomics
Mus musculus
spinal cord
spot
123
13,237
counts
VERIFIED
90749118a945d15b60c9c7a8caf57ea6df12776519d43a7b0262b6c11618a975
native_grid
unresolved
null
false
false
null
GSM3399152
train
samples/GSE120374/GSM3399152
GSM3399153
GSE120374
GSE120374
sda-all
sda-all-v1.4.0
ST (legacy)
Spatial Transcriptomics
Mus musculus
spinal cord
spot
121
13,591
counts
VERIFIED
8bc3dbb447f87b2cc1f4f2a9564bcac8cefda202cb4e82bb9b47699284c354e8
native_grid
unresolved
null
false
false
null
GSM3399153
train
samples/GSE120374/GSM3399153
GSM3399154
GSE120374
GSE120374
sda-all
sda-all-v1.4.0
ST (legacy)
Spatial Transcriptomics
Mus musculus
spinal cord
spot
146
13,700
counts
VERIFIED
4717613108c85aa84742964830835ed0d4099731502370819a5a8af2b6f80b31
native_grid
unresolved
null
false
false
null
GSM3399154
train
samples/GSE120374/GSM3399154
GSM3399155
GSE120374
GSE120374
sda-all
sda-all-v1.4.0
ST (legacy)
Spatial Transcriptomics
Mus musculus
spinal cord
spot
137
13,678
counts
VERIFIED
d9d4101b478d1cb0991dfa5a395ee1f83ee7987c878e1f0701ee4dfddce579e9
native_grid
unresolved
null
false
false
null
GSM3399155
train
samples/GSE120374/GSM3399155
GSM3399156
GSE120374
GSE120374
sda-all
sda-all-v1.4.0
ST (legacy)
Spatial Transcriptomics
Mus musculus
spinal cord
spot
157
13,426
counts
VERIFIED
4f181eafa9aca72e4faa7709ae4df8b1c0a1f930d72866d382082683441be47c
native_grid
unresolved
null
false
false
null
GSM3399156
train
samples/GSE120374/GSM3399156
GSM3399157
GSE120374
GSE120374
sda-all
sda-all-v1.4.0
ST (legacy)
Spatial Transcriptomics
Mus musculus
spinal cord
spot
158
12,957
counts
VERIFIED
8e4c83c0db4840db704ac6f6b115cc1ada6ce5bcc0fa2e49ae00be565f0687d1
native_grid
unresolved
null
false
false
null
GSM3399157
train
samples/GSE120374/GSM3399157
GSM3399158
GSE120374
GSE120374
sda-all
sda-all-v1.4.0
ST (legacy)
Spatial Transcriptomics
Mus musculus
spinal cord
spot
158
12,902
counts
VERIFIED
decce7773ddcdd911ca2ed627fab73ae24bacd9972222979db0b1e50f4586317
native_grid
unresolved
null
false
false
null
GSM3399158
train
samples/GSE120374/GSM3399158
GSM3399159
GSE120374
GSE120374
sda-all
sda-all-v1.4.0
ST (legacy)
Spatial Transcriptomics
Mus musculus
spinal cord
spot
165
13,467
counts
VERIFIED
7427f1939f84a5836c93d3fdfa521322d3037bc62d9764216f250087ffb3f649
native_grid
unresolved
null
false
false
null
GSM3399159
train
samples/GSE120374/GSM3399159
GSM3399160
GSE120374
GSE120374
sda-all
sda-all-v1.4.0
ST (legacy)
Spatial Transcriptomics
Mus musculus
spinal cord
spot
182
13,250
counts
VERIFIED
b3703a5fedf719d3b8134de36d59fafddec6d94abe38ddf9d925db0e80120f5f
native_grid
unresolved
null
false
false
null
GSM3399160
train
samples/GSE120374/GSM3399160
GSM3399161
GSE120374
GSE120374
sda-all
sda-all-v1.4.0
ST (legacy)
Spatial Transcriptomics
Mus musculus
spinal cord
spot
161
13,208
counts
VERIFIED
2f4344b3463196c85c62cda6051b06ae1c8f51bfc5da23624a13a25321391a4c
native_grid
unresolved
null
false
false
null
GSM3399161
train
samples/GSE120374/GSM3399161
GSM3399162
GSE120374
GSE120374
sda-all
sda-all-v1.4.0
ST (legacy)
Spatial Transcriptomics
Mus musculus
spinal cord
spot
107
12,777
counts
VERIFIED
154153fa8749b9a56f3bd546c43929d03e61a2d9db477bbb77a086c518853dd9
native_grid
unresolved
null
false
false
null
GSM3399162
train
samples/GSE120374/GSM3399162
GSM3399163
GSE120374
GSE120374
sda-all
sda-all-v1.4.0
ST (legacy)
Spatial Transcriptomics
Mus musculus
spinal cord
spot
258
13,707
counts
VERIFIED
7c49d031eca788b33fc7f5eba7d8d9e973cb61ba6183b310831b4404bc40cc39
native_grid
unresolved
null
false
false
null
GSM3399163
train
samples/GSE120374/GSM3399163
GSM3399164
GSE120374
GSE120374
sda-all
sda-all-v1.4.0
ST (legacy)
Spatial Transcriptomics
Mus musculus
spinal cord
spot
270
13,822
counts
VERIFIED
4a1a7dbb845d407202ccddac5d8a3f1493881e3c0d01ca8854709a9262640486
native_grid
unresolved
null
false
false
null
GSM3399164
train
samples/GSE120374/GSM3399164
GSM3399165
GSE120374
GSE120374
sda-all
sda-all-v1.4.0
ST (legacy)
Spatial Transcriptomics
Mus musculus
spinal cord
spot
151
14,217
counts
VERIFIED
9aac6034da09d89d8f45226fadee66b85811bddfe214422776c684ae9eeca4ac
native_grid
unresolved
null
false
false
null
GSM3399165
train
samples/GSE120374/GSM3399165
GSM3399166
GSE120374
GSE120374
sda-all
sda-all-v1.4.0
ST (legacy)
Spatial Transcriptomics
Mus musculus
spinal cord
spot
161
15,064
counts
VERIFIED
821def1c59f7b4b604a3b0f68643f96b36931b1fabd0bf7f6666396c8a5952db
native_grid
unresolved
null
false
false
null
GSM3399166
train
samples/GSE120374/GSM3399166
GSM3399167
GSE120374
GSE120374
sda-all
sda-all-v1.4.0
ST (legacy)
Spatial Transcriptomics
Mus musculus
spinal cord
spot
179
14,970
counts
VERIFIED
04e54014dd3e3cdfab59e45d3a0b5ef7a96eaa1c74a3f8a7a5693669ec897fa6
native_grid
unresolved
null
false
false
null
GSM3399167
train
samples/GSE120374/GSM3399167
GSM3399168
GSE120374
GSE120374
sda-all
sda-all-v1.4.0
ST (legacy)
Spatial Transcriptomics
Mus musculus
spinal cord
spot
268
15,313
counts
VERIFIED
78d362f2f9905fe4164287994d05c4fb2ae09efb6e35587363398de247d5502b
native_grid
unresolved
null
false
false
null
GSM3399168
train
samples/GSE120374/GSM3399168
GSM3399169
GSE120374
GSE120374
sda-all
sda-all-v1.4.0
ST (legacy)
Spatial Transcriptomics
Mus musculus
spinal cord
spot
243
14,577
counts
VERIFIED
15ec69f0166bc667020bfb9714322eab918030b26b9f08cce705564fdbe36d9c
native_grid
unresolved
null
false
false
null
GSM3399169
train
samples/GSE120374/GSM3399169
GSM3399170
GSE120374
GSE120374
sda-all
sda-all-v1.4.0
ST (legacy)
Spatial Transcriptomics
Mus musculus
spinal cord
spot
186
14,632
counts
VERIFIED
6af05d594346325ca0a5c1c8635bbdd5c8bf7486a8e952042917d7c699674197
native_grid
unresolved
null
false
false
null
GSM3399170
train
samples/GSE120374/GSM3399170
GSM3399171
GSE120374
GSE120374
sda-all
sda-all-v1.4.0
ST (legacy)
Spatial Transcriptomics
Mus musculus
spinal cord
spot
198
14,227
counts
VERIFIED
d462f4932e1df2b0199c0ad277747de142a371b0ee1c33c2dbd69e5983b06621
native_grid
unresolved
null
false
false
null
GSM3399171
train
samples/GSE120374/GSM3399171
GSM3399172
GSE120374
GSE120374
sda-all
sda-all-v1.4.0
ST (legacy)
Spatial Transcriptomics
Mus musculus
spinal cord
spot
301
14,047
counts
VERIFIED
c7cb0d62bba6d8b972f6141995d2b57d4415d9d744c68cbb6cd88af20bc6c1a8
native_grid
unresolved
null
false
false
null
GSM3399172
train
samples/GSE120374/GSM3399172
GSM3399173
GSE120374
GSE120374
sda-all
sda-all-v1.4.0
ST (legacy)
Spatial Transcriptomics
Mus musculus
spinal cord
spot
220
13,528
counts
VERIFIED
3890064cc7af14b06d6a75db54b481a71f04568f9bc734a6b11185744b91ea4c
native_grid
unresolved
null
false
false
null
GSM3399173
train
samples/GSE120374/GSM3399173
GSM3399174
GSE120374
GSE120374
sda-all
sda-all-v1.4.0
ST (legacy)
Spatial Transcriptomics
Mus musculus
spinal cord
spot
272
14,618
counts
VERIFIED
533797b57d1d7fdba7459d864d4023bf7aaccddbf0697eaa1a02867a3a631994
native_grid
unresolved
null
false
false
null
GSM3399174
train
samples/GSE120374/GSM3399174
GSM3399175
GSE120374
GSE120374
sda-all
sda-all-v1.4.0
ST (legacy)
Spatial Transcriptomics
Mus musculus
spinal cord
spot
273
14,023
counts
VERIFIED
841933ed5df5fcbb3906ba92a1b51f9b2d4ed44ecd0325856289d41badf7a995
native_grid
unresolved
null
false
false
null
GSM3399175
train
samples/GSE120374/GSM3399175
GSM3399176
GSE120374
GSE120374
sda-all
sda-all-v1.4.0
ST (legacy)
Spatial Transcriptomics
Mus musculus
spinal cord
spot
157
15,349
counts
VERIFIED
de2351fe9f8525afe74b76d30228b1a47eee0e4ce2bbe74dc2a656a912eaafdc
native_grid
unresolved
null
false
false
null
GSM3399176
train
samples/GSE120374/GSM3399176
GSM3399177
GSE120374
GSE120374
sda-all
sda-all-v1.4.0
ST (legacy)
Spatial Transcriptomics
Mus musculus
spinal cord
spot
173
15,398
counts
VERIFIED
801ea63ebff4fbba62c0789086732e2172dd2d194522e4293ccb297c7c5a122a
native_grid
unresolved
null
false
false
null
GSM3399177
train
samples/GSE120374/GSM3399177
GSM3399178
GSE120374
GSE120374
sda-all
sda-all-v1.4.0
ST (legacy)
Spatial Transcriptomics
Mus musculus
spinal cord
spot
355
15,627
counts
VERIFIED
fde2e316e84e5248476b1f942ca2d567a73f14d4d9b06596106b8303bfb7c03d
native_grid
unresolved
null
false
false
null
GSM3399178
train
samples/GSE120374/GSM3399178
GSM3399179
GSE120374
GSE120374
sda-all
sda-all-v1.4.0
ST (legacy)
Spatial Transcriptomics
Mus musculus
spinal cord
spot
299
14,635
counts
VERIFIED
8286d1bad78b042f5cc58552d92cbb872f2122dca289c7a4edd3d577a1caf1b6
native_grid
unresolved
null
false
false
null
GSM3399179
train
samples/GSE120374/GSM3399179
GSM3399180
GSE120374
GSE120374
sda-all
sda-all-v1.4.0
ST (legacy)
Spatial Transcriptomics
Mus musculus
spinal cord
spot
301
15,189
counts
VERIFIED
b8af6de61d9c49f993587c5f7d105ee752e331711ca775c1e458b5aaa198e760
native_grid
unresolved
null
false
false
null
GSM3399180
train
samples/GSE120374/GSM3399180
GSM3399181
GSE120374
GSE120374
sda-all
sda-all-v1.4.0
ST (legacy)
Spatial Transcriptomics
Mus musculus
spinal cord
spot
372
14,900
counts
VERIFIED
ea86d9f0a6c9f70b60f24682d3a60d5040073fc40292d5edea64b328b1ee9d6e
native_grid
unresolved
null
false
false
null
GSM3399181
train
samples/GSE120374/GSM3399181
GSM3399182
GSE120374
GSE120374
sda-all
sda-all-v1.4.0
ST (legacy)
Spatial Transcriptomics
Mus musculus
spinal cord
spot
405
14,837
counts
VERIFIED
5ff6ec1e2c3b40d0db4c7f0f16965c71a96f1327a43d9036b17ebc99b83a1b06
native_grid
unresolved
null
false
false
null
GSM3399182
train
samples/GSE120374/GSM3399182
GSM3399183
GSE120374
GSE120374
sda-all
sda-all-v1.4.0
ST (legacy)
Spatial Transcriptomics
Mus musculus
spinal cord
spot
305
14,866
counts
VERIFIED
afef97c0fc39c86fd585d006bb043953d7844d7db0788c477f6f8ce3bd40b013
native_grid
unresolved
null
false
false
null
GSM3399183
train
samples/GSE120374/GSM3399183
GSM3399184
GSE120374
GSE120374
sda-all
sda-all-v1.4.0
ST (legacy)
Spatial Transcriptomics
Mus musculus
spinal cord
spot
322
14,831
counts
VERIFIED
bed38d5dd5cd9d2e6953ca4ede1798027d346aa830bd46b4a95b9354a25e4a68
native_grid
unresolved
null
false
false
null
GSM3399184
train
samples/GSE120374/GSM3399184
GSM3399185
GSE120374
GSE120374
sda-all
sda-all-v1.4.0
ST (legacy)
Spatial Transcriptomics
Mus musculus
spinal cord
spot
231
13,684
counts
VERIFIED
adb5c4a2364c0610f7f2223e8f120e899a329f9a810ef0fcf616c4c6fa8a2981
native_grid
unresolved
null
false
false
null
GSM3399185
train
samples/GSE120374/GSM3399185
GSM3399186
GSE120374
GSE120374
sda-all
sda-all-v1.4.0
ST (legacy)
Spatial Transcriptomics
Mus musculus
spinal cord
spot
240
14,310
counts
VERIFIED
5a7de42082dcee9db71e1860364933f41fcc56e664762f9c763bfca03a68919b
native_grid
unresolved
null
false
false
null
GSM3399186
train
samples/GSE120374/GSM3399186
GSM3399187
GSE120374
GSE120374
sda-all
sda-all-v1.4.0
ST (legacy)
Spatial Transcriptomics
Mus musculus
spinal cord
spot
259
13,840
counts
VERIFIED
b7ca23ea944e29da9aa2e24e073206f1b58e2bb0ceb8ce59d72a2a61c170af65
native_grid
unresolved
null
false
false
null
GSM3399187
train
samples/GSE120374/GSM3399187
GSM3399188
GSE120374
GSE120374
sda-all
sda-all-v1.4.0
ST (legacy)
Spatial Transcriptomics
Mus musculus
spinal cord
spot
262
14,390
counts
VERIFIED
a19ad41d961cd505772666ac39f498f6ce0b92fd803443fb199f505bedbf99da
native_grid
unresolved
null
false
false
null
GSM3399188
train
samples/GSE120374/GSM3399188
GSM3399189
GSE120374
GSE120374
sda-all
sda-all-v1.4.0
ST (legacy)
Spatial Transcriptomics
Mus musculus
spinal cord
spot
349
13,544
counts
VERIFIED
6d7be32713a671c235babd636c0856659292093e725a84fd6c6993c238ef1ce3
native_grid
unresolved
null
false
false
null
GSM3399189
train
samples/GSE120374/GSM3399189
GSM3399190
GSE120374
GSE120374
sda-all
sda-all-v1.4.0
ST (legacy)
Spatial Transcriptomics
Mus musculus
spinal cord
spot
320
14,282
counts
VERIFIED
8dfd69e55c3ee1e3750738b66c1bda2ece631923fb28d3666df70c170ac0c661
native_grid
unresolved
null
false
false
null
GSM3399190
train
samples/GSE120374/GSM3399190
GSM3399191
GSE120374
GSE120374
sda-all
sda-all-v1.4.0
ST (legacy)
Spatial Transcriptomics
Mus musculus
spinal cord
spot
238
14,169
counts
VERIFIED
8956b2dd0ca18faf0ce8609f2426b3c38fc0e088d8da8f56d523c59ae60e756e
native_grid
unresolved
null
false
false
null
GSM3399191
train
samples/GSE120374/GSM3399191
GSM3399192
GSE120374
GSE120374
sda-all
sda-all-v1.4.0
ST (legacy)
Spatial Transcriptomics
Mus musculus
spinal cord
spot
344
15,413
counts
VERIFIED
10c13c08d753200c1c9502711ca2c600e681aaf468ea3dadb502945ddaebfbaf
native_grid
unresolved
null
false
false
null
GSM3399192
train
samples/GSE120374/GSM3399192
GSM3399193
GSE120374
GSE120374
sda-all
sda-all-v1.4.0
ST (legacy)
Spatial Transcriptomics
Mus musculus
spinal cord
spot
307
15,682
counts
VERIFIED
c9f9ddc871ea92a30dc2a86eef814741665b6db679cf24f02781605dcb8f7e6a
native_grid
unresolved
null
false
false
null
GSM3399193
train
samples/GSE120374/GSM3399193
GSM3399194
GSE120374
GSE120374
sda-all
sda-all-v1.4.0
ST (legacy)
Spatial Transcriptomics
Mus musculus
spinal cord
spot
288
15,368
counts
VERIFIED
9c83e70f91b2762aaed57672616ea4d696048a32f4fde8be3558204047950385
native_grid
unresolved
null
false
false
null
GSM3399194
train
samples/GSE120374/GSM3399194
GSM3399195
GSE120374
GSE120374
sda-all
sda-all-v1.4.0
ST (legacy)
Spatial Transcriptomics
Mus musculus
spinal cord
spot
232
15,033
counts
VERIFIED
92aeb2b913ff1665d1765d28c46167f05c03bdbc0868a3e572ee59fa5c3a8c73
native_grid
unresolved
null
false
false
null
GSM3399195
train
samples/GSE120374/GSM3399195
GSM3399196
GSE120374
GSE120374
sda-all
sda-all-v1.4.0
ST (legacy)
Spatial Transcriptomics
Mus musculus
spinal cord
spot
241
15,268
counts
VERIFIED
7471741be6e7aaea37bab9b03fe2898522d4ac5370fefa08346e3daf15c40d15
native_grid
unresolved
null
false
false
null
GSM3399196
train
samples/GSE120374/GSM3399196
GSM3399197
GSE120374
GSE120374
sda-all
sda-all-v1.4.0
ST (legacy)
Spatial Transcriptomics
Mus musculus
spinal cord
spot
219
14,911
counts
VERIFIED
16b1b79070e24783d435ade67227c93dc308d00c5eb32e325d27322b287204fb
native_grid
unresolved
null
false
false
null
GSM3399197
train
samples/GSE120374/GSM3399197
GSM3399198
GSE120374
GSE120374
sda-all
sda-all-v1.4.0
ST (legacy)
Spatial Transcriptomics
Mus musculus
spinal cord
spot
197
15,408
counts
VERIFIED
aaaa1f79714a16928e8fc923bf66c0f6b329354c573d1a107fd3d5dde9e6b4b0
native_grid
unresolved
null
false
false
null
GSM3399198
train
samples/GSE120374/GSM3399198
GSM3399199
GSE120374
GSE120374
sda-all
sda-all-v1.4.0
ST (legacy)
Spatial Transcriptomics
Mus musculus
spinal cord
spot
219
14,699
counts
VERIFIED
c203c0f008b28249bbecb1fb9a80c633f9616e58a605a4ba22dc2154b4aae450
native_grid
unresolved
null
false
false
null
GSM3399199
train
samples/GSE120374/GSM3399199
GSM3399200
GSE120374
GSE120374
sda-all
sda-all-v1.4.0
ST (legacy)
Spatial Transcriptomics
Mus musculus
spinal cord
spot
108
15,510
counts
VERIFIED
92a37b5d0335e438b8a66f5798826fc3a43c034b53b02adc58f04cbfbbca1f0a
native_grid
unresolved
null
false
false
null
GSM3399200
train
samples/GSE120374/GSM3399200
GSM3399201
GSE120374
GSE120374
sda-all
sda-all-v1.4.0
ST (legacy)
Spatial Transcriptomics
Mus musculus
spinal cord
spot
124
15,082
counts
VERIFIED
21ff49ce56a538767f981df4014cb6cbe86c77b866bf086bc8804460e351242c
native_grid
unresolved
null
false
false
null
GSM3399201
train
samples/GSE120374/GSM3399201
GSM3399202
GSE120374
GSE120374
sda-all
sda-all-v1.4.0
ST (legacy)
Spatial Transcriptomics
Mus musculus
spinal cord
spot
147
15,170
counts
VERIFIED
8c44ba866601968616cfa208ff5fd2088e9980c007071a1d39210dd9f9f5c961
native_grid
unresolved
null
false
false
null
GSM3399202
train
samples/GSE120374/GSM3399202
GSM3399203
GSE120374
GSE120374
sda-all
sda-all-v1.4.0
ST (legacy)
Spatial Transcriptomics
Mus musculus
spinal cord
spot
270
15,857
counts
VERIFIED
609ea2deb8c0130fe8931383e1242542367def6a5a3a7d4c4e94447f819ff125
native_grid
unresolved
null
false
false
null
GSM3399203
train
samples/GSE120374/GSM3399203
GSM3399204
GSE120374
GSE120374
sda-all
sda-all-v1.4.0
ST (legacy)
Spatial Transcriptomics
Mus musculus
spinal cord
spot
200
15,800
counts
VERIFIED
bcccde640ac7d600b066e018d2a1d212cd662d0702974d49da2f099850355f25
native_grid
unresolved
null
false
false
null
GSM3399204
train
samples/GSE120374/GSM3399204
GSM3399205
GSE120374
GSE120374
sda-all
sda-all-v1.4.0
ST (legacy)
Spatial Transcriptomics
Mus musculus
spinal cord
spot
236
16,181
counts
VERIFIED
4642b9a88fedfbd067ebabc7ccbb47ebbc37bb4e633716eb5966d3e79f880669
native_grid
unresolved
null
false
false
null
GSM3399205
train
samples/GSE120374/GSM3399205
GSM3399206
GSE120374
GSE120374
sda-all
sda-all-v1.4.0
ST (legacy)
Spatial Transcriptomics
Mus musculus
spinal cord
spot
253
14,949
counts
VERIFIED
1b3d846f52bb4b58d055dfa631e93245c345f202735506bb5af8aaa9f98cb0bf
native_grid
unresolved
null
false
false
null
GSM3399206
train
samples/GSE120374/GSM3399206
GSM3399207
GSE120374
GSE120374
sda-all
sda-all-v1.4.0
ST (legacy)
Spatial Transcriptomics
Mus musculus
spinal cord
spot
316
15,971
counts
VERIFIED
fe790e0b75a257fa1fa8e2d925fb8f330c10f26172a1ec760e79611faad4e285
native_grid
unresolved
null
false
false
null
GSM3399207
train
samples/GSE120374/GSM3399207
GSM3399208
GSE120374
GSE120374
sda-all
sda-all-v1.4.0
ST (legacy)
Spatial Transcriptomics
Mus musculus
spinal cord
spot
211
15,258
counts
VERIFIED
c1abce263e8a586cb0c9020e0c5716a21649af0fbcf36a5f7682330fb1855c17
native_grid
unresolved
null
false
false
null
GSM3399208
train
samples/GSE120374/GSM3399208
GSM3399209
GSE120374
GSE120374
sda-all
sda-all-v1.4.0
ST (legacy)
Spatial Transcriptomics
Mus musculus
spinal cord
spot
221
14,976
counts
VERIFIED
91e6eebbd82b0a4c56f6fbd232cde664f2a4838d0baf0b092e98d097c5792e31
native_grid
unresolved
null
false
false
null
GSM3399209
train
samples/GSE120374/GSM3399209
GSM3399210
GSE120374
GSE120374
sda-all
sda-all-v1.4.0
ST (legacy)
Spatial Transcriptomics
Mus musculus
spinal cord
spot
234
15,647
counts
VERIFIED
9389ff158cc64dc0fe1330feb8a0ca8dd7da9569edfe14a18a040f68e077f9d6
native_grid
unresolved
null
false
false
null
GSM3399210
train
samples/GSE120374/GSM3399210
GSM3399211
GSE120374
GSE120374
sda-all
sda-all-v1.4.0
ST (legacy)
Spatial Transcriptomics
Mus musculus
spinal cord
spot
215
14,788
counts
VERIFIED
ffa71fa3b2fcafe709e8e449a31c0175d87e374a89bbc36e11d2fab30ce9cf3a
native_grid
unresolved
null
false
false
null
GSM3399211
train
samples/GSE120374/GSM3399211
GSM3399212
GSE120374
GSE120374
sda-all
sda-all-v1.4.0
ST (legacy)
Spatial Transcriptomics
Mus musculus
spinal cord
spot
237
15,393
counts
VERIFIED
2f10465150fd909d960cd8ee9f47cf62ac49c4818293a1976207f27ef14a9e1e
native_grid
unresolved
null
false
false
null
GSM3399212
train
samples/GSE120374/GSM3399212
GSM3399213
GSE120374
GSE120374
sda-all
sda-all-v1.4.0
ST (legacy)
Spatial Transcriptomics
Mus musculus
spinal cord
spot
269
14,854
counts
VERIFIED
4ba5be570b6e0e8c7f3cac898b1a815d8532d93549a37728d2e4f30670efcec4
native_grid
unresolved
null
false
false
null
GSM3399213
train
samples/GSE120374/GSM3399213
GSM3399214
GSE120374
GSE120374
sda-all
sda-all-v1.4.0
ST (legacy)
Spatial Transcriptomics
Mus musculus
spinal cord
spot
281
14,902
counts
VERIFIED
3517cd703c9fae8105fdfb907085ce0561e1c74a0a4a6e3a26eda520746fda22
native_grid
unresolved
null
false
false
null
GSM3399214
train
samples/GSE120374/GSM3399214
GSM3399215
GSE120374
GSE120374
sda-all
sda-all-v1.4.0
ST (legacy)
Spatial Transcriptomics
Mus musculus
spinal cord
spot
195
15,430
counts
VERIFIED
dc89d59c07f202b16420f3aa4a960326adb9a3bdad0f29cc9d7974cde176e729
native_grid
unresolved
null
false
false
null
GSM3399215
train
samples/GSE120374/GSM3399215
GSM3399216
GSE120374
GSE120374
sda-all
sda-all-v1.4.0
ST (legacy)
Spatial Transcriptomics
Mus musculus
spinal cord
spot
273
15,845
counts
VERIFIED
0a40a725d9cddb44e40bc2d33e8f4e77b9072ae2fe55f360680e5fb5a1a698f5
native_grid
unresolved
null
false
false
null
GSM3399216
train
samples/GSE120374/GSM3399216
GSM3399217
GSE120374
GSE120374
sda-all
sda-all-v1.4.0
ST (legacy)
Spatial Transcriptomics
Mus musculus
spinal cord
spot
243
15,712
counts
VERIFIED
15b86c75a43932590fc7fd48c3bdcc8b8f7d9a4da31468d4117ecf2e134f9649
native_grid
unresolved
null
false
false
null
GSM3399217
train
samples/GSE120374/GSM3399217
GSM3399218
GSE120374
GSE120374
sda-all
sda-all-v1.4.0
ST (legacy)
Spatial Transcriptomics
Mus musculus
spinal cord
spot
246
15,323
counts
VERIFIED
9d180f6d367ad8a3e47e5d5ad3bcb32777d9b51751e6bf3b75adfc304822f2a8
native_grid
unresolved
null
false
false
null
GSM3399218
train
samples/GSE120374/GSM3399218
GSM3399219
GSE120374
GSE120374
sda-all
sda-all-v1.4.0
ST (legacy)
Spatial Transcriptomics
Mus musculus
spinal cord
spot
253
15,834
counts
VERIFIED
58f596fd3e556b3c8e19a4b2131f4744d9cf00364f408f8268c156bb66208e39
native_grid
unresolved
null
false
false
null
GSM3399219
train
samples/GSE120374/GSM3399219
GSM3399220
GSE120374
GSE120374
sda-all
sda-all-v1.4.0
ST (legacy)
Spatial Transcriptomics
Mus musculus
spinal cord
spot
308
16,136
counts
VERIFIED
a16432053f6d1fe4ed71541ad3ec829efaf6e2ee6d7ed709457a5c62a6c741d4
native_grid
unresolved
null
false
false
null
GSM3399220
train
samples/GSE120374/GSM3399220
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SpatialDataAgent-DB Public Catalog

H&E, spatial GFAP, DAPI and CosMx atlas previews

Left to right: H&E and GFAP from the same Visium section (GSM9721856), Xenium DAPI (GSM9301054), and a CosMx composite (GSM9372712). The GFAP panel displays all 3,416 recorded spots using the existing log1p preview values.

Search and inspect the metadata for 12,163 samples, 1,265 published study folders and 635,240,170 spatial observations in the fixed sda-unified-20261010-v3 snapshot. It includes 8,211 samples with released tissue images.

This repository contains metadata only. Full sample data require manual access approval and are currently being uploaded. The metadata catalog's presence does not imply that the full upload is complete.

catalog/samples.parquet and samples.csv provide the original release index, including repository-relative sample_dir paths and source content hashes. Study metadata and source-bound biological/audit annotations are included as atlas-study-metadata.jsonl and atlas-sample-metadata.jsonl.

Reported vocabulary and age units are not harmonized. Missing biological metadata and review states remain explicit. Counts capability, source verification, image registration and human review describe different checks. Observations are spots, cells, bins or beads, not independent donors.

Source index SHA256: 909c4ec50e71c636eadc7bf01a9479fef1b4fd480ac348dfea6b785e566c7bed. See the main Dataset Card for data organization, quality distinctions, splits, provenance and source-specific reuse terms.

Collection composition

Sample counts by platform, image availability, source collection and split

Sample counts by platform, image availability, source collection and retained split (n = 12,163; source snapshot: sda-unified-20261010-v3).

Access and reuse

Browse the public catalog, request access to the full sample data, then retrieve H5AD, available TIFF images and JSON metadata. AnnData/Scanpy can read downloaded expression files. Streaming training shards and the Python SDK are planned follow-up outputs.

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