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ec-knn-v2
CPU-only enzyme EC prediction for the Leak CURBER enzyme classification task.
Method: MMseqs2 alignment of each unique input sequence against the full training set, then a bit-score-weighted vote over the ECs of the top hits. The predicted EC set is every EC whose vote is at least half the top EC's vote (at most 3). If a sequence has no hit, the most frequent training EC is predicted.
Run: python /app/predict.py --input INPUT.parquet --output OUTPUT.jsonl
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