WGLab/PoreFM-RNA_pseU

PoreFM-RNA pseU

Supervised PoreFM classifier for pseudouridine detection in Oxford Nanopore RNA reads.

Model version: 0.1.0. Chemistry: RNA004. Embedding dimension: 512.

File	Contents
model.pt	Complete backbone and classification head with preprocessing and modification-tag defaults.

Class order: U, pseU (canonical uridine, pseudouridine).

Saved BAM-tag defaults: base T; modification code 17802 for pseudouridine. RNA uridine is represented as T in BAM sequences and modification tags.

Model configuration and preprocessing are embedded in the checkpoints. Setup and usage are documented in the PoreFM code repository.

manifest.json records artifact identities and tensor fingerprints. SHA256SUMS verifies checkpoint downloads. Tensor fingerprints are independent of descriptive metadata; file hashes identify exact bytes. Documentation-only changes leave the model version unchanged.