PoreFM
Collection
Multi-modal Oxford Nanopore foundation models for DNA and RNA modification detection. • 8 items • Updated
PoreFM-DNA BrdU / EdU
Supervised PoreFM classifier for Oxford Nanopore DNA modification detection.
Model version: 0.1.0. Chemistry: R10.4.1 (E8.2, 400 bps). Embedding dimension: 384.
| File | Contents |
|---|---|
model.pt |
Complete backbone and classification head with preprocessing and modification-tag defaults. |
Class order: T, BrdU, EdU.
Saved BAM-tag defaults: base T; modification codes 472552, 232486, corresponding to BrdU, EdU.
Model configuration and preprocessing are embedded in the checkpoints. Setup and usage are documented in the PoreFM code repository.
manifest.json records artifact identities and tensor fingerprints. SHA256SUMS verifies checkpoint downloads. Tensor fingerprints are independent of descriptive metadata; file hashes identify exact bytes. Documentation-only changes leave the model version unchanged.
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WGLab/PoreFM-DNA