YAML Metadata Warning:empty or missing yaml metadata in repo card
Check out the documentation for more information.
Graph-Residual with ESM-2
This repository contains the ESM-2 Graph-Residual implementation and its verified ESM-2 backbone and ResidualV2 adapter checkpoint.
Contents
models/esm2/backbone/: ESM-2 8M backbone files and configuration.models/esm2/residual/graph_residual_v2.pt: Graph-Residual ResidualV2 checkpoint.src/: model, graph, training, and evaluation code.configs/: portable ESM-2 and evaluation configurations.
The adapter uses 64-dimensional graph features, a 256-dimensional hidden layer, and 640-dimensional sequence outputs with residual fusion and LayerNorm. Raw datasets, graph databases, logs, and optimizer state are not included.
Intended use
Protein representation adaptation, relation-aware retrieval, and analysis of heterogeneous biological graph context.
Limitations
Compatible graph representation inputs are required. This release is not a universal protein predictor and is not a generic unseen-node inductive model.
Citation
Please cite the associated Graph-Residual / ESM2 V2 manuscript or preprint and the upstream ESM-2 model.