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language:
- en tags:
- medical
- clinical-ner
- biobert
- bc5cdr
Clinical NER Model: Chemicals & Diseases
Fine-tuned microsoft/BiomedNLP-PubMedBERT-base-uncased-abstract on the BC5CDR dataset.
Entity Types
- Chemical (green)
- Disease (pink)
Usage
from transformers import pipeline
pipe = pipeline("token-classification", model="HFpf/pubmedbert-bc5cdr-ner")
result = pipe("The patient was treated with metformin for type 2 diabetes.")
print(result)
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