AllenInstitute/BG-human-enformer

Enformer retrained on human (Homo sapiens) Basal Ganglia data.

Model Details

• Architecture: enformer
• Species: Homo_sapiens
• Number of tracks: 60
• Framework: PyTorch Lightning
• Checkpoint format: Lightning .ckpt

Target Tracks

• AMY-SLEA-BNST_D1_GABA
• AMY-SLEA-BNST_GABA
• Astrocyte
• BAM
• BF_SKOR1_Glut
• B_cells
• COP
• Endo
• Ependymal
• GPe-NDB-SI_LHX6-LHX8-GBX1_GABA
• ... (50 more)

Usage

from enhancerdesigner.models import load_model

model = load_model("AllenInstitute/BG-human-enformer")