ge8rgia/ChromBPNet-neonatal-pseudotime-6.0

Mouse Neonatal (mm10) Pseudotime 6.0 ChromBPNet Model

Description

ChromBPNet model trained on neonatal mouse pituitary Gonadotroph ATAC-seq data (mm10). Cells were ordered along a pseudotime trajectory representing the differentiation of pituitary stem cells into Gonadotrophs. The trajectory was divided into seven bins, and this model was trained on cells at pseudotime 6.0, representing the gonadotroph end of the trajectory.

Files

• models/chrombpnet.h5 — Full ChromBPNet model
• models/chrombpnet_nobias.h5 — ChromBPNet model without bias correction
• models/bias_model_scaled.h5 — Scaled Tn5 bias model

Training Details

• Genome: mm10
• Cell type: Pituitary neonatal cells (pseudotime 6.0)
• Data type: scATAC-seq
• Bias model used: Tn5-bias-mm10-neonatal/bias.h5
• Framework: ChromBPNet

Context

Part of a ChromBPNet atlas of neonatal mouse pituitary pseudotime differentiation.

Bias correction was performed using the corresponding bias model: Pituitary ChromBPNet - Bias models

See the full pseudotime series: Pituitary ChromBPNet - Mouse Single Cell Neonatal Models

See the full atlas: Pituitary ChromBPNet - Mouse Single Cell Models