ge8rgia/ChromBPNet-neonatal-pseudotime-2.0

Mouse Neonatal (mm10) Pseudotime 2.0 ChromBPNet Model

Description

ChromBPNet model trained on neonatal mouse pituitary Gonadotroph ATAC-seq data (mm10). Cells were ordered along a pseudotime trajectory representing the differentiation of pituitary stem cells into Gonadotrophs. The trajectory was divided into seven bins, and this model was trained on cells at pseudotime 2.0.

Files

• models/chrombpnet.h5 — Full ChromBPNet model
• models/chrombpnet_nobias.h5 — ChromBPNet model without bias correction
• models/bias_model_scaled.h5 — Scaled Tn5 bias model

Training Details

• Genome: mm10
• Cell type: Pituitary neonatal cells (pseudotime 2.0)
• Data type: scATAC-seq
• Bias model used: Tn5-bias-mm10-neonatal/bias.h5
• Framework: ChromBPNet

Context

Part of a ChromBPNet atlas of neonatal mouse pituitary pseudotime differentiation.

Bias correction was performed using the corresponding bias model: Pituitary ChromBPNet - Bias models

See the full pseudotime series: Pituitary ChromBPNet - Mouse Single Cell Neonatal Models

See the full atlas: Pituitary ChromBPNet - Mouse Single Cell Models