(Thyroid) Thyroid Carcinoma
This model can additionally be run on our pathology reports platform
Credits: Dr. Yazeed Alwelaie (King Fahad Medical City, Riyadh, Saudi Arabia)
Introduction
This H&E thyroid carcinoma tissue classifier was developed using transfer learning on a histology optimized version of the VGG19 CNN (DOI: 10.1038/s42256-019-0068-6) and trained to recognize thyroid carcinoma and other surrounding tissue elements.
Annotations were carried out on batches of image tiles (dimensions: 512 x 512 px) grouped using image-based clustering (HAVOC, DOI: 10.1126/sciadv.adg1894) from 20 publicly available TCGA-THCA H&E-stained whole slide images. Validation testing was carried out on non-overlapping cases from TCGA.
Classes
- Normal Thyroid
- Skeletal Muscle
- Connective Tissue
- Desmoplastic Stroma
- Blank space
- Inflammation
- Lymphocytic Thyroiditis
- Necrosis
- Papillae
- Tumor (ptc. follicular)
- Tumor (ptc. classic)
- Tumor (ptc. tall cell)
- Fibrosis and Hyalinization
This information can be found in the inference.json file
Evaluation Metrics
Classifier validation can be found on the pathology reports platform
- Downloads last month
- 7