(Breast) Breast Invasive Carcinoma
This model can additionally be run on our pathology reports platform
Credits: Dr. Kiran Jakate
Introduction
This H&E breast invasive carcinoma tissue classifier was developed using transfer learning on a histology optimized version of the VGG19 CNN (DOI: 10.1038/s42256-019-0068-6) and trained to recognize breast invasive carcinoma and other surrounding tissue elements.
Annotations were carried out on batches of image tiles (dimensions: 512 x 512 px) grouped using image-based clustering (HAVOC, DOI: 10.1126/sciadv.adg1894) from 5 publicly available TCGA-BRCA H&E-stained whole slide images. The validation was carried out on non-overlapping cases from TCGA.
Classes
- Adipose Tissue
- Adipose Tissue Interfaced With Another Tissue Type
- Blank Space
- Blood Vessel
- Fibroconnective Tissue
- Fibrosis
- Lymph Node Capsule
- Lymph Node Cortex
- Lymph node hilum area
- Nodal Metastatic Carcinoma
This information can be found in the inference.json file
Evaluation Metrics
Classifier validation can be found on the pathology reports platform
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