stankubrick/SegRap23-Lite

About

This is a subset of the SegRap23 dataset.

• 120 images (for both contrast-CT and CT) and segmentation masks (for both tasks 1 and 2 in SegRap23 challenge)
• No change to any image or segmentation mask
• Files are renamed according to case IDs

This dataset is released under the CC BY-NC 4.0 license.

Official Release

For more information, please refer to the SegRap23 challenge.

• Data License (official): N/A (Please contact me if there are any licensing issues.)
• Challenge (official): https://segrap2023.grand-challenge.org
• Data (official): https://segrap2023.grand-challenge.org/dataset/
• Paper: https://doi.org/10.1016/j.media.2024.103447

Segmentation Labels

labels_map_tasks1 = {
    "1": "brain",
    "2": "brainstem",
    "3": "optic chiasm",
    "4": "left temporal lobe",
    "5": "right temporal lobe",
    "6": "left overlap region of temporal lobe & hippocampus",
    "7": "right overlap region of temporal lobe & hippocampus",
    "8": "left hippocampus",
    "9": "right hippocampus",
    "10": "left eye",
    "11": "right eye",
    "12": "left lens",
    "13": "right lens",
    "14": "left optic nerve",
    "15": "right optic nerve",
    "16": "left middle ear",
    "17": "right middle ear",
    "18": "left internal auditory canal",
    "19": "right internal auditory canal",
    "20": "left overlap region of middle ear & tympanic cavity",
    "21": "right overlap region of middle ear & tympanic cavity",
    "22": "left tympanic cavity",
    "23": "right tympanic cavity",
    "24": "left overlap region of middle ear & vestibular semicircular canal",
    "25": "right overlap region of middle ear & vestibular semicircular canal",
    "26": "left vestibular semicircular canal",
    "27": "right vestibular semicircular canal",
    "28": "left cochlea",
    "29": "right cochlea",
    "30": "left overlap region of middle ear & eustachian tube bone",
    "31": "right overlap region of middle ear & eustachian tube bone",
    "32": "left eustachian tube bone",
    "33": "right eustachian tube bone",
    "34": "pituitary gland",
    "35": "oral cavity",
    "36": "left mandible",
    "37": "right mandible",
    "38": "left submandibular gland",
    "39": "right submandibular gland",
    "40": "left parotid gland",
    "41": "right parotid gland",
    "42": "left mastoid",
    "43": "right mastoid",
    "44": "left temporomandibular joint",
    "45": "right temporomandibular joint",
    "46": "spinal cord",
    "47": "esophagus",
    "48": "larynx",
    "49": "larynx glottic",
    "50": "larynx supraglottic",
    "51": "overlap region of larynx & pharynx constrictors",
    "52": "pharynx constrictor",
    "53": "thyroid",
    "54": "trachea",
}

 labels_map_tasks2 = {
    "1": "gross target volume of nasopharynx tumor",
    "2": "gross target volume of lymph node tumor",
}

Download from Huggingface

#!/bin/bash
pip install huggingface-hub[cli]
huggingface-cli login --token $HF_TOKEN

# python
from huggingface_hub import snapshot_download
snapshot_download(repo_id="YongchengYAO/SegRap23-Lite", repo_type='dataset', local_dir="/your/local/folder")

Download from Raw Data

python download_SegRap23.py -d <datasets_folder> -n SegRap23