rnacentral_id stringlengths 18 20 | taxid int32 5.48k 420k | description stringlengths 61 88 | rna_type stringclasses 1
value | so_rna_type stringclasses 2
values | databases stringclasses 3
values | secondary_structure stringclasses 8
values | sequence stringclasses 10
values |
|---|---|---|---|---|---|---|---|
URS00001450D9_93061 | 93,061 | 23S ribosomal RNA from Staphylococcus aureus subsp. aureus NCTC 8325 (PDB 4WF9, chain X) | rRNA | SO:0001001 | ENA,PDBe,Rfam,RiboVision,SILVA | ..((((((......((((((((((.....(((..(((((((((((........(((((((......)))).....((((((...(((.......)))......))))))...)))....(((....)))(((.(((......))).))).((((((((...........)))))).)).......(((((......(......).......)))).).........((....))...((((......((.....)).....))))...(((....((((((((....))))))))......(((.(((((......(...... | GATTAAGTTATTAAGGGCGCACGGTGGATGCCTTGGCACTAGAAGCCAATGAAGGACGTTACTAACGACGATATGCTTTGGGGAGCTGTAAGTAAGCTTTGATCCAGAGATTTCCGAATGGGGAAACCCAGCATGAGTTATGTCATGTTATCGATATGTGAATACATAGCATATCAGAAGGCACACCCGGAGAACTGAAACATCTTAGTACCCGGAGGAAGAGAAAGAAAATTCGATTCCCTTAGTAGCGGCGAGCGAAACGGGAAGAGCCCAAACCAACAAGCTTGCTTGTTGGGGTTGTAGGACACTCTATACGGAGT... |
URS00001C3329_93061 | 93,061 | 23S ribosomal RNA from Staphylococcus aureus subsp. aureus NCTC 8325 (PDB 9GHG, chain A) | rRNA | SO:0001001 | ENA,PDBe,Rfam,SILVA | ..((((((......((((((((((.....(((..(((((((((((........(((((((......)))).....((((((...(((.......)))......))))))...)))....(((....)))(((.(((......))).))).((((((((...........)))))).)).......(((((......(......).......)))).).........((....))...((((......((.....)).....))))...(((....((((((((....))))))))......(((.(((((......(...... | GATTAAGTTATTAAGGGCGCACGGTGGATGCCTTGGCACTAGAAGCCGATGAAGGACGTTACTAACGACGATATGCTTTGGGGAGCTGTAAGTAAGCTTTGATCCAGAGATTTCCGAATGGGGAAACCCAGCATGAGTTATGTCATGTTATCGATATGTGAATACATAGCATATCAGAAGGCACACCCGGAGAACTGAAACATCTTAGTACCCGGAGGAAGAGAAAGAAAATTCGATTCCCTTAGTAGCGGCGAGCGAAACGGGAAGAGCCCAAACCAACAAGCTTGCTTGTTGGGGTTGTAGGACACTCTATACGGAGT... |
URS000024712F_93061 | 93,061 | 23S ribosomal RNA from Staphylococcus aureus subsp. aureus NCTC 8325 (PDB 5ND9, chain A) | rRNA | SO:0001001 | ENA,PDBe,Rfam,SILVA | ..((((((......((((((((((.....(((..(((((((((((........(((((((......)))).....((((((...(((.......)))......))))))...)))....(((....)))(((.(((......))).))).((((((((...........)))))).)).......(((((......(......).......)))).).........((....))...((((......((.....)).....))))...(((....((((((((....))))))))......(((.(((((......(...... | GATTAAGTTATTAAGGGCGCACGGTGGATGCCTTGGCACTAGAAGCCGATGAAGGACGTTACTAACGACGATATGCTTTGGGGAGCTGTAAGTAAGCTTTGATCCAGAGATTTCCGAATGGGGAAACCCAGCATGAGTTATGTCATGTTATCGATATGTGAATACATAGCATATCAGAAGGCACACCCGGAGAACTGAAACATCTTAGTACCCGGAGGAAGAGAAAGAAAATTCGATTCCCTTAGTAGCGGCGAGCGAAATGGGAAGAGCCCAAACCAACAAGCTTGCTTGTTGGGGTTGTAGGACACTCTATACGGAGT... |
URS000024A55C_83333 | 83,333 | 23S ribosomal RNA from Escherichia coli K-12 (PDB 7NBU, chain a) | rRNA | SO:0001001 | ENA,PDBe,Rfam,SILVA | ((((((((......((((((((((.....(((..(((((((((((........(((((((......)))).....(((((((..(((.......)))......)))))))...)))....(((....)))(((((((....))))))).(((((((((.........)))))))))......((((((..(((((....))..))).))))).).........((....))...(((((.....((.....))....)))))..((((..((((......(((((((((((((.(((...(((((......)))))....... | GGTTAAGCGACTAAGCGTACACGGTGGATGCCCTGGCAGTCAGAGGCGATGAAGGACGTGCTAATCTGCGATAAGCGTCGGTAAGGTGATATGAACCGTTATAACCGGCGATTTCCGAATGGGGAAACCCAGTGTGTTTCGACACACTATCATTAACTGAATCCATAGGTTAATGAGGCGAACCGGGGGAACTGAAACATCTAAGTACCCCGAGGAAAAGAAATCAACCGAGATTCCCCCAGTAGCGGCGAGCGAACGGGGAGGAGCCCAGAGCCTGAATCAGTGTGTGTGTTAGTGGAAGCGTCTGGAAAGGCGCGCGA... |
URS00003C2204_208964 | 208,964 | 23S ribosomal RNA from Pseudomonas aeruginosa PAO1 (PDB 7UNV, chain A) | rRNA | SO:0001001 | ENA,PDBe,Rfam,SILVA | ((((((((......((((((((((.....(((..(((((((((((........(((((((......)))).....(((((((..(((........))).....)))))))...)))....(((....)))(((((((....))))))).(((((((((.........)))))))))......((((((..(((((....))..))).))))).).........((....))...(((((.....((.....))....)))))..((((..(...(((((..((((((.(((...(((.(......).)))........((... | GGTCAAGTGAAGAAGCGCATACGGTGGATGCCTTGGCAGTCAGAGGCGATGAAAGACGTGGTAGCCTGCGAAAAGCTTCGGGGAGTCGGCAAACAGACTTTGATCCGGAGATCTCTGAATGGGGGAACCCACCTAGGATAACCTAGGTATCTTGTACTGAATCCATAGGTGCAAGAGGCGAACCAGGGGAACTGAAACATCTAAGTACCCTGAGGAAAAGAAATCAACCGAGATTCCCTTAGTAGTGGCGAGCGAACGGGGATTAGCCCTTAAGCTTCATTGATTTTAGCGGAACGCTCTGGAAAGTGCGGCCATAGTGG... |
URS00004B0F34_83333 | 83,333 | RNA (2903-MER) from Escherichia coli K-12 (PDB 3JBV, chain b) | rRNA | SO:0001001 | ENA,PDBe,Rfam,SILVA | ((((((((......((((((((((.....(((..(((((((((((........(((((((......)))).....(((((((..(((.......)))......)))))))...)))....(((....)))(((((((....))))))).(((((((((.........)))))))))......((((((..(((((....))..))).))))).).........((....))...(((((.....((.....))....)))))..((((..((((......(((((((((((((.(((...(((((......)))))....... | GGTTAAGCGACTAAGCGTACACGGTGGATGCCCTGGCAGTCAGAGGCGATGAAGGACGTGCTAATCTGCGATAAGCGTCGGTAAGGTGATATGAACCGTTATAACCGGCGATTTCCGAATGGGGAAACCCAGTGTGTTTCGACACACTATCATTAACTGAATCCATAGGTTAATGAGGCGAACCGGGGGAACTGAAACATCTAAGTACCCCGAGGAAAAGAAATCAACCGAGATTCCCCCAGTAGCGGCGAGCGAACGGGGAGCAGCCCAGAGCCTGAATCAGTGTGTGTGTTAGTGGAAGCGTCTGGAAAGGCGCGCGA... |
URS00005906D8_224308 | 224,308 | 23S ribosomal RNA from Bacillus subtilis subsp. subtilis str. 168 (PDB 7QV2, chain V) | rRNA | SO:0001001 | ENA,PDBe,Rfam,SILVA | ..((((((......((((((((((.....(((..(((((((((((........((((((........))).....((((((...(((.......)))......))))))...)))....(((....)))(((((((......))))))).(((((((((.........))))))).))........(((((.....(......)......)))))...........((....))...((((......((.....)).....))))...((((...((((((((....))))))))......(((((((((.....(((..... | GGTTAAGTTAGAAAGGGCGCACGGTGGATGCCTTGGCACTAGGAGCCGATGAAGGACGGGACGAACACCGATATGCTTCGGGGAGCTGTAAGCAAGCTTTGATCCGGAGATTTCCGAATGGGGAAACCCACCACTCGTAATGGAGTGGTATCCATATCTGAATTCATAGGATATGAGAAGGCAGACCCGGGGAACTGAAACATCTAAGTACCCGGAGGAAGAGAAAGCAAATGCGATTCCCTGAGTAGCGGCGAGCGAAACGGGATCAGCCCAAACCAAGAGGCTTGCCTCTTGGGGTTGTAGGACACTCTGTACGGAGT... |
URS00005E0FC6_419947 | 419,947 | 23S ribosomal RNA from Mycobacterium tuberculosis H37Ra (PDB 7F0D, chain A) | rRNA | SO:0001001 | ENA,PDBe,Rfam,SILVA | ((((((((......((((((((((.....(((..(((((((((((........(((((((......)))).....((((((...(((........)))......))))))...)))....(((....)))(((((((......)))))))..(((((((...........))))).)).......(((((.....((....))......)))))...........((....))...(((((.....((.....))....)))))..((((....(((((((((.......((......))....)))))))))......(... | TTGTAAGTGTCTAAGGGCGCATGGTGGATGCCTTGGCATCGAGAGCCGATGAAGGACGTGGGAGGCTGCGATATGCCTCGGGGAGCTGTCAACCGAGCGTGGATCCGAGGATTTCCGAATGGGGAAACCCAGCACGAGTGATGTCGTGCTACCCGCATCTGAATATATAGGGTGCGGGAGGGAACGCGGGGAAGTGAAACATCTCAGTACCCGTAGGAGGAGAAAACAATTGTGATTCCGCAAGTAGTGGCGAGCGAACGCGGAACAGGCTAAACCGCACGCATGGGTAACCGGGTAGGGGTTGTGTGTGCGGGGTTGTG... |
URS00005E0FC6_83332 | 83,332 | 23S ribosomal RNA from Mycobacterium tuberculosis H37Rv (PDB 7KGB, chain A) | rRNA | SO:0001001 | ENA,PDBe,Rfam,SILVA | ((((((((......((((((((((.....(((..(((((((((((........(((((((......)))).....((((((...(((........)))......))))))...)))....(((....)))(((((((......)))))))..(((((((...........))))).)).......(((((.....((....))......)))))...........((....))...(((((.....((.....))....)))))..((((....(((((((((.......((......))....)))))))))......(... | TTGTAAGTGTCTAAGGGCGCATGGTGGATGCCTTGGCATCGAGAGCCGATGAAGGACGTGGGAGGCTGCGATATGCCTCGGGGAGCTGTCAACCGAGCGTGGATCCGAGGATTTCCGAATGGGGAAACCCAGCACGAGTGATGTCGTGCTACCCGCATCTGAATATATAGGGTGCGGGAGGGAACGCGGGGAAGTGAAACATCTCAGTACCCGTAGGAGGAGAAAACAATTGTGATTCCGCAAGTAGTGGCGAGCGAACGCGGAACAGGCTAAACCGCACGCATGGGTAACCGGGTAGGGGTTGTGTGTGCGGGGTTGTG... |
URS0000BE72FC_246196 | 246,196 | 23S ribosomal RNA from Mycolicibacterium smegmatis MC2 155 (PDB 9K0Z, chain h) | rRNA | SO:0001001 | PDBe,Rfam | ...(((((......((((((((((.....(((..(((((((((((........(((((((......)))).....((((((...(((........)))......))))))...)))....(((....)))(((((((......)))))))..(.(((((...........)))))..).......(((((.....((....))......)))))...........((.....))...(((((.....((.....))....)))))..(.(((....(((((((((.......((......))....)))))))))........ | TTGTAAGTGTTTAAGGGCGCATGGTGGATGCCTTGGCACTGGGAGCCGATGAAGGACGTAGGAGGCTGCGATAAGCCTCGGGGAGCTGTCAACCGAGCGTTGATCCGAGGATGTCCGAATGGGGAAACCCGGCACGAGTGATGTCGTGTCACCAGGCGCTGAATATATAGGCGTCTGGGGGGAACGCGGGGAAGTGAAACATCTCAGTACCCGTAGGAAGAGAAAACAAAATGTGATTCCGTGAGTAGTGGCGAGCGAAAGCGGAGGATGGCTAAACCGTATGCATGTGATACCGGGTAGGGGTTGTGTGTGCGGGGTTG... |
URS0000C2FD9C_237561 | 237,561 | 25S ribosomal RNA from Candida albicans SC5314 (PDB 7Q08, chain 1) | rRNA | SO:0000651 | PDBe,Rfam | .......................((((((.....((....))......))))).).........((....))..(((((......((.....)).....))))).((((..((((..((.((.((((((...)))))).)).))..))))....(((((.(.((((((((((((((((((((...(.((((......)))))..(...).(((.......)))....))))))).)..))))))))....))))).)))))........(((((((........))))))).....(((((........)))))..))))... | TGACCTCAAATCAGGTAGGACTACCCGCTGAACTTAAGCATATCAATAAGCGGAGGAAAAGAAACCAACAGGGATTGCCTCAGTAGCGGCGAGTGAAGCGGCAAAAGCTCAAATTTGAAATCTGGCGTCTTTGGCGTCCGAGTTGTAATTTGAAGAAGGTATCTTTGGGCCCGGCTCTTGTCTATGTTCCTTGGAACAGGACGTCACAGAGGGTGAGAATCCCGTGCGATGAGATGACCCGGGTCTGTGTAAAGTTCCTTCGACGAGTCGAGTTGTTTGGGAATGCAGCTCTAAGTGGGTGGTAAATTCCATCTAAAGCT... |
URS0000C2FD9C_5476 | 5,476 | 25S (gene name XR_002086444.1) from Candida albicans (PDB 8OH6, chain 1) | rRNA | SO:0000651 | PDBe,Rfam | .......................((((((.....((....))......))))).).........((....))..(((((......((.....)).....))))).((((..((((..((.((.((((((...)))))).)).))..))))....(((((.(.((((((((((((((((((((...(.((((......)))))..(...).(((.......)))....))))))).)..))))))))....))))).)))))........(((((((........))))))).....(((((........)))))..))))... | TGACCTCAAATCAGGTAGGACTACCCGCTGAACTTAAGCATATCAATAAGCGGAGGAAAAGAAACCAACAGGGATTGCCTCAGTAGCGGCGAGTGAAGCGGCAAAAGCTCAAATTTGAAATCTGGCGTCTTTGGCGTCCGAGTTGTAATTTGAAGAAGGTATCTTTGGGCCCGGCTCTTGTCTATGTTCCTTGGAACAGGACGTCACAGAGGGTGAGAATCCCGTGCGATGAGATGACCCGGGTCTGTGTAAAGTTCCTTCGACGAGTCGAGTTGTTTGGGAATGCAGCTCTAAGTGGGTGGTAAATTCCATCTAAAGCT... |
RNAcentral Export
Export Metadata
- Query:
(((RF02541 OR RF02543 OR RF02540) has_secondary_structure:"True" AND length:[1000 TO 6000] AND expert_db:"PDBe") AND (entry_type:"Sequence" OR entry_type:"Gene")) NOT entry_type:"gene" - Export date: 26 May 2026 22:13:25
- RNAcentral version: v24
- Number of sequences: 12
Description
RNAcentral is a free, public resource that offers integrated access to a comprehensive and up-to-date set of non-coding RNA sequences provided by a collaborating group of Expert Databases.
If you use RNAcentral's data in your work, please consider citing our most recent NAR paper: https://doi.org/10.1093/nar/gkaf1329
License
The data is available under the CC0 1.0 Universal (CC0 1.0) Public Domain Dedication.
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