| ******************************************************************* |
| * Genome-wide Complex Trait Analysis (GCTA) |
| * version v1.94.1 Linux |
| * Built at Nov 15 2022 21:14:25, by GCC 8.5 |
| * (C) 2010-present, Yang Lab, Westlake University |
| * Please report bugs to Jian Yang <jian.yang@westlake.edu.cn> |
| ******************************************************************* |
| Analysis started at 22:11:55 CST on Fri May 22 2026. |
| Hostname: user-H3C-UniServer-R5300-G6 |
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| Accepted options: |
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| Note: This is a multi-thread program. You could specify the number of threads by the |
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| Reading IDs of the GRM from [grm.grm.id]. |
| 1404 IDs are read from [grm.grm.id]. |
| Reading the GRM from [grm.grm.bin]. |
| GRM for 1404 individuals are included from [grm.grm.bin]. |
| Reading phenotypes from [../test.phe.txt]. |
| Non-missing phenotypes of 1405 individuals are included from [../test.phe.txt]. |
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| 1404 individuals are in common in these files. |
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| Performing REML analysis ... (Note: may take hours depending on sample size). |
| 1404 observations, 1 fixed effect(s), and 2 variance component(s)(including residual variance). |
| Calculating prior values of variance components by EM-REML ... |
| Updated prior values: 282.802 260.815 |
| logL: -5012.68 |
| Running AI-REML algorithm ... |
| Iter. logL V(G) V(e) |
| 1 -4993.18 309.58466 215.04081 |
| 2 -4985.53 329.71951 185.97541 |
| 3 -4982.17 345.01562 166.39952 |
| 4 -4980.60 356.68309 152.76737 |
| 5 -4979.84 365.58985 143.07987 |
| 6 -4979.46 387.08601 121.01408 |
| 7 -4979.07 392.37997 117.85582 |
| 8 -4979.06 393.29774 117.25076 |
| 9 -4979.06 393.46136 117.14187 |
| 10 -4979.06 393.49057 117.12240 |
| Log-likelihood ratio converged. |
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| Calculating the logLikelihood for the reduced model ... |
| (variance component 1 is dropped from the model) |
| Calculating prior values of variance components by EM-REML ... |
| Updated prior values: 619.68509 |
| logL: -5215.21536 |
| Running AI-REML algorithm ... |
| Iter. logL V(e) |
| 1 -5215.22 619.68509 |
| Log-likelihood ratio converged. |
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| Summary result of REML analysis: |
| Source Variance SE |
| V(G) 393.490566 45.437363 |
| V(e) 117.122405 28.975832 |
| Vp 510.612971 24.005379 |
| V(G)/Vp 0.770624 0.062508 |
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| Sampling variance/covariance of the estimates of variance components: |
| 2.064554e+03 -1.163947e+03 |
| -1.163947e+03 8.395989e+02 |
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| Summary result of REML analysis has been saved in the file [herit.hsq]. |
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| Analysis finished at 22:11:57 CST on Fri May 22 2026 |
| Overall computational time: 1.51 sec. |
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