Datasets:
File size: 2,516 Bytes
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* Genome-wide Complex Trait Analysis (GCTA)
* version v1.94.1 Linux
* Built at Nov 15 2022 21:14:25, by GCC 8.5
* (C) 2010-present, Yang Lab, Westlake University
* Please report bugs to Jian Yang <jian.yang@westlake.edu.cn>
*******************************************************************
Analysis started at 22:11:55 CST on Fri May 22 2026.
Hostname: user-H3C-UniServer-R5300-G6
Accepted options:
--reml
--pheno ../test.phe.txt
--grm grm
--out herit
Note: This is a multi-thread program. You could specify the number of threads by the --thread-num option to speed up the computation if there are multiple processors in your machine.
Reading IDs of the GRM from [grm.grm.id].
1404 IDs are read from [grm.grm.id].
Reading the GRM from [grm.grm.bin].
GRM for 1404 individuals are included from [grm.grm.bin].
Reading phenotypes from [../test.phe.txt].
Non-missing phenotypes of 1405 individuals are included from [../test.phe.txt].
1404 individuals are in common in these files.
Performing REML analysis ... (Note: may take hours depending on sample size).
1404 observations, 1 fixed effect(s), and 2 variance component(s)(including residual variance).
Calculating prior values of variance components by EM-REML ...
Updated prior values: 282.802 260.815
logL: -5012.68
Running AI-REML algorithm ...
Iter. logL V(G) V(e)
1 -4993.18 309.58466 215.04081
2 -4985.53 329.71951 185.97541
3 -4982.17 345.01562 166.39952
4 -4980.60 356.68309 152.76737
5 -4979.84 365.58985 143.07987
6 -4979.46 387.08601 121.01408
7 -4979.07 392.37997 117.85582
8 -4979.06 393.29774 117.25076
9 -4979.06 393.46136 117.14187
10 -4979.06 393.49057 117.12240
Log-likelihood ratio converged.
Calculating the logLikelihood for the reduced model ...
(variance component 1 is dropped from the model)
Calculating prior values of variance components by EM-REML ...
Updated prior values: 619.68509
logL: -5215.21536
Running AI-REML algorithm ...
Iter. logL V(e)
1 -5215.22 619.68509
Log-likelihood ratio converged.
Summary result of REML analysis:
Source Variance SE
V(G) 393.490566 45.437363
V(e) 117.122405 28.975832
Vp 510.612971 24.005379
V(G)/Vp 0.770624 0.062508
Sampling variance/covariance of the estimates of variance components:
2.064554e+03 -1.163947e+03
-1.163947e+03 8.395989e+02
Summary result of REML analysis has been saved in the file [herit.hsq].
Analysis finished at 22:11:57 CST on Fri May 22 2026
Overall computational time: 1.51 sec.
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