*******************************************************************
* Genome-wide Complex Trait Analysis (GCTA)
* version v1.94.1 Linux
* Built at Nov 15 2022 21:14:25, by GCC 8.5
* (C) 2010-present, Yang Lab, Westlake University
* Please report bugs to Jian Yang <jian.yang@westlake.edu.cn>
*******************************************************************
Analysis started at 22:11:55 CST on Fri May 22 2026.
Hostname: user-H3C-UniServer-R5300-G6

Accepted options:
--reml
--pheno ../test.phe.txt
--grm grm
--out herit

Note: This is a multi-thread program. You could specify the number of threads by the --thread-num option to speed up the computation if there are multiple processors in your machine.

Reading IDs of the GRM from [grm.grm.id].
1404 IDs are read from [grm.grm.id].
Reading the GRM from [grm.grm.bin].
GRM for 1404 individuals are included from [grm.grm.bin].
Reading phenotypes from [../test.phe.txt].
Non-missing phenotypes of 1405 individuals are included from [../test.phe.txt].

1404 individuals are in common in these files.

Performing  REML analysis ... (Note: may take hours depending on sample size).
1404 observations, 1 fixed effect(s), and 2 variance component(s)(including residual variance).
Calculating prior values of variance components by EM-REML ...
Updated prior values: 282.802 260.815
logL: -5012.68
Running AI-REML algorithm ...
Iter.	logL	V(G)	V(e)	
1	-4993.18	309.58466	215.04081	
2	-4985.53	329.71951	185.97541	
3	-4982.17	345.01562	166.39952	
4	-4980.60	356.68309	152.76737	
5	-4979.84	365.58985	143.07987	
6	-4979.46	387.08601	121.01408	
7	-4979.07	392.37997	117.85582	
8	-4979.06	393.29774	117.25076	
9	-4979.06	393.46136	117.14187	
10	-4979.06	393.49057	117.12240	
Log-likelihood ratio converged.

Calculating the logLikelihood for the reduced model ...
(variance component 1 is dropped from the model)
Calculating prior values of variance components by EM-REML ...
Updated prior values: 619.68509
logL: -5215.21536
Running AI-REML algorithm ...
Iter.	logL	V(e)	
1	-5215.22	619.68509	
Log-likelihood ratio converged.

Summary result of REML analysis:
Source	Variance	SE
V(G)	393.490566	45.437363
V(e)	117.122405	28.975832
Vp	510.612971	24.005379
V(G)/Vp	0.770624	0.062508

Sampling variance/covariance of the estimates of variance components:
2.064554e+03	-1.163947e+03	
-1.163947e+03	8.395989e+02	

Summary result of REML analysis has been saved in the file [herit.hsq].

Analysis finished at 22:11:57 CST on Fri May 22 2026
Overall computational time: 1.51 sec.