Datasets:
| PLINK v1.9.0-b.8 64-bit (22 Oct 2024) | |
| Options in effect: | |
| --bfile sub | |
| --chr 1 | |
| --from-bp 1000000 | |
| --ld-window 50 | |
| --ld-window-r2 0 | |
| --out subld | |
| --r2 | |
| --to-bp 2000000 | |
| Hostname: user-H3C-UniServer-R5300-G6 | |
| Working directory: /home/wlg/MyFiles/Projects/EasyGS_answer/Q002/answer | |
| Start time: Wed May 27 11:32:37 2026 | |
| Random number seed: 1779852757 | |
| 2063880 MB RAM detected; reserving 1031940 MB for main workspace. | |
| 70 out of 2668862 variants loaded from .bim file. | |
| 450 people (0 males, 0 females, 450 ambiguous) loaded from .fam. | |
| Ambiguous sex IDs written to subld.nosex . | |
| Using up to 223 threads (change this with --threads). | |
| Before main variant filters, 450 founders and 0 nonfounders present. | |
| Calculating allele frequencies... done. | |
| Total genotyping rate is exactly 1. | |
| 70 variants and 450 people pass filters and QC. | |
| Note: No phenotypes present. | |
| Running --r2 with the following filters: | |
| --ld-window: 50 | |
| --ld-window-kb: 1000 | |
| --ld-window-r2: 0 | |
| --r2 to subld.ld ... done. | |
| End time: Wed May 27 11:32:38 2026 | |