Datasets:
File size: 1,021 Bytes
c6ed645 | 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 | PLINK v1.9.0-b.8 64-bit (22 Oct 2024)
Options in effect:
--bfile sub
--chr 1
--from-bp 1000000
--ld-window 50
--ld-window-r2 0
--out subld
--r2
--to-bp 2000000
Hostname: user-H3C-UniServer-R5300-G6
Working directory: /home/wlg/MyFiles/Projects/EasyGS_answer/Q002/answer
Start time: Wed May 27 11:32:37 2026
Random number seed: 1779852757
2063880 MB RAM detected; reserving 1031940 MB for main workspace.
70 out of 2668862 variants loaded from .bim file.
450 people (0 males, 0 females, 450 ambiguous) loaded from .fam.
Ambiguous sex IDs written to subld.nosex .
Using up to 223 threads (change this with --threads).
Before main variant filters, 450 founders and 0 nonfounders present.
Calculating allele frequencies... done.
Total genotyping rate is exactly 1.
70 variants and 450 people pass filters and QC.
Note: No phenotypes present.
Running --r2 with the following filters:
--ld-window: 50
--ld-window-kb: 1000
--ld-window-r2: 0
--r2 to subld.ld ... done.
End time: Wed May 27 11:32:38 2026
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